RLG00000035454

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000647
Physical Location & Seq
Forward (+)
67103880 .. 67105385
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035454

Sequence Viewer

Length: 534 bp
ATGATGGTGGTGGAATCACTGGGACTGCTGACGGAGTCGACCATAATGCCAAGAAGCACCGCTCCGTCGCCGGCGTCGGAGCCTCTTCGATCATGGAGCTCAAACCCTAGCTTTACCAGTCTTAAGAAGATTCCAAGAAGTCTAAAGACCTCGCAGACCCAGACGCTGAGTTCCACCGCGCTAAGTAGAAGATCACCGCACACGATGTCTTCTCTGCCAAGAACTCCGGCGTCGACGCCTGGGCCCACAGGTGAAATTTGGATCGTTCTAGGTTCGGGTTTTGGGATCGGATTAGGGATTAAATTTTGGGTTGAGTTTTTAGGGTACTGCTCAGTGATAAAGATGAGCCCTGCAAGCATCTGCCGAGAGCTGCCGACATCTGCCGAGAAGCCCAGCGAGCACCTGCCGACACCTGCCGACACCTGCCGAGCACCTGCCGAGCACCTGCCGACACCTGCCGACACCTGCCGAGCATCTGCCGAGACCTGCAGAGCACCTGCCGAGACCTGTCGACACCTGCCGATAGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

18.86

Weight (kDa)

8.86

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 9 cut(s) 411, 421, 431, 442, 453, 463, 473, 505, 525
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 3 cut(s) 38, 233, 511
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 60, 177, 197
AclWI GGATC 2 cut(s) 269, 293
AcsI RAATTY 2 cut(s) 255, 302
AcyI GRCGYC 3 cut(s) 74, 230, 236
AfaI GTAC 1 cut(s) 326
AflII CTTAAG 1 cut(s) 122
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 4 cut(s) 99, 111, 370, 527
AluI AGCT 4 cut(s) 99, 111, 370, 527
Alw21I GWGCWC 5 cut(s) 101, 402, 433, 444, 496
Alw26I GTCTC 2 cut(s) 476, 497
AlwI GGATC 2 cut(s) 269, 293
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 1 cut(s) 242
ApaI GGGCCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 370, 527
ApoI RAATTY 2 cut(s) 255, 302
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 242, 243
AsuHPI GGTGA 2 cut(s) 186, 263
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 3 cut(s) 101, 246, 350
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 5 cut(s) 101, 402, 433, 444, 496
BbvI GCAGC 2 cut(s) 357, 514
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 476, 497
BfaI CTAG 3 cut(s) 108, 269, 532
BfmI CTRYAG 1 cut(s) 487
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 2 cut(s) 371, 528
BlsI GCNGC 2 cut(s) 372, 529
Bme1390I CCNGG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 242, 243
BmiI GGNNCC 2 cut(s) 81, 244
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 366, 482
BmuI ACTGGG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 201
BsaHI GRCGYC 3 cut(s) 74, 230, 236
BsaI GGTCTC 2 cut(s) 476, 497
BsaJI CCNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 24, 117
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 158, 345
BseNI ACTGG 2 cut(s) 24, 117
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 357, 514
BseYI CCCAGC 1 cut(s) 392
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 5 cut(s) 101, 402, 433, 444, 496
BsiSI CCGG 2 cut(s) 71, 227
BslFI GGGAC 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 476, 497
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 2 cut(s) 476, 497
Bsp120I GGGCCC 1 cut(s) 242
Bsp1286I GDGCHC 7 cut(s) 101, 246, 350, 402, 433, 444, 496
Bsp143I GATC 4 cut(s) 89, 191, 261, 285
BspACI CCGC 3 cut(s) 60, 177, 197
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 159, 344
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 81, 244
BspMAI CTGCAG 1 cut(s) 491
BspPI GGATC 2 cut(s) 269, 293
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 2 cut(s) 476, 497
BsrBI CCGCTC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 24, 117
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 4 cut(s) 89, 191, 261, 285
BssNI GRCGYC 3 cut(s) 74, 230, 236
Bst2UI CCWGG 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 3 cut(s) 74, 230, 236
BstAFI CTTAAG 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 72, 355, 398
BstDEI CTNAG 3 cut(s) 167, 182, 331
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 4 cut(s) 92, 194, 264, 288
BstMAI GTCTC 2 cut(s) 476, 497
BstMBI GATC 4 cut(s) 89, 191, 261, 285
BstMWI GCNNNNNNNGC 2 cut(s) 354, 397
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 487
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 357, 514
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 17, 339
Cac8I GCNNGC 3 cut(s) 72, 355, 398
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 242, 243
CseI GACGC 4 cut(s) 63, 172, 219, 244
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 93
CviJI RGCY 8 cut(s) 82, 99, 111, 244, 348, 370, 391, 527
CviKI_1 RGCY 8 cut(s) 82, 99, 111, 244, 348, 370, 391, 527
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 167, 182, 331
DpnI GATC 4 cut(s) 91, 193, 263, 287
DpnII GATC 4 cut(s) 89, 191, 261, 285
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 3 cut(s) 101, 246, 350
Eco31I GGTCTC 2 cut(s) 476, 497
Eco53kI GAGCTC 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 238
EcoT38I GRGCYC 3 cut(s) 101, 246, 350
FaeI CATG 1 cut(s) 96
FaiI YATR 2 cut(s) 44, 94
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 92
FblI GTMKAC 3 cut(s) 38, 233, 511
Fnu4HI GCNGC 2 cut(s) 371, 528
FriOI GRGCYC 3 cut(s) 101, 246, 350
Fsp4HI GCNGC 2 cut(s) 371, 528
FspBI CTAG 3 cut(s) 108, 269, 532
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 371, 528
GsaI CCCAGC 1 cut(s) 396
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 71, 227
HgaI GACGC 4 cut(s) 63, 172, 219, 244
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 3 cut(s) 74, 230, 236
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 3 cut(s) 39, 234, 512
HindII GTYRAC 3 cut(s) 39, 234, 512
HinfI GANTC 3 cut(s) 14, 35, 130
HpaII CCGG 2 cut(s) 71, 227
HphI GGTGA 2 cut(s) 186, 263
Hpy166II GTNNAC 3 cut(s) 39, 234, 512
Hpy188I TCNGA 2 cut(s) 79, 290
Hpy8I GTNNAC 3 cut(s) 39, 234, 512
Hpy99I CGWCG 4 cut(s) 70, 79, 235, 238
HpyCH4V TGCA 2 cut(s) 353, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 397
HpyF3I CTNAG 3 cut(s) 167, 182, 331
Hsp92I GRCGYC 3 cut(s) 74, 230, 236
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 1 cut(s) 179
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 89, 191, 261, 285
LmnI GCTCC 3 cut(s) 67, 79, 96
Lsp1109I GCAGC 2 cut(s) 357, 514
LweI GCATC 2 cut(s) 366, 482
MaeI CTAG 3 cut(s) 108, 269, 532
MalI GATC 4 cut(s) 91, 193, 263, 287
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 89, 191, 261, 285
MboII GAAGA 4 cut(s) 77, 139, 201, 201
MhlI GDGCHC 7 cut(s) 101, 246, 350, 402, 433, 444, 496
MluCI AATT 2 cut(s) 255, 302
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 93, 160
MreI CGCCGGCG 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 70
MseI TTAA 2 cut(s) 123, 300
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 2 cut(s) 71, 227
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 354, 397
NaeI GCCGGC 1 cut(s) 72
NdeII GATC 4 cut(s) 89, 191, 261, 285
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 2 cut(s) 81, 244
NmeAIII GCCGAG 7 cut(s) 389, 409, 452, 463, 494, 505, 526
PaqCI CACCTGC 9 cut(s) 411, 421, 431, 442, 453, 463, 473, 505, 525
PdiI GCCGGC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 14, 130
PflFI GACNNNGTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 372, 529
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 81, 244
PspOMI GGGCCC 1 cut(s) 242
PspPI GGNCC 2 cut(s) 242, 243
PstI CTGCAG 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 101
SalI GTCGAC 3 cut(s) 37, 232, 510
SaqAI TTAA 2 cut(s) 123, 300
SatI GCNGC 2 cut(s) 371, 528
Sau3AI GATC 4 cut(s) 89, 191, 261, 285
Sau96I GGNCC 2 cut(s) 242, 243
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 7 cut(s) 101, 246, 350, 402, 433, 444, 496
SfaNI GCATC 2 cut(s) 366, 482
SfcI CTRYAG 1 cut(s) 487
SgrAI CRCCGGYG 1 cut(s) 70
SgrDI CGTCGACG 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 255, 302
SsiI CCGC 3 cut(s) 60, 177, 197
SspMI CTAG 3 cut(s) 108, 269, 532
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 238
TaqI TCGA 4 cut(s) 38, 88, 233, 511
TasI AATT 2 cut(s) 255, 302
TfiI GAWTC 2 cut(s) 14, 130
Tru1I TTAA 2 cut(s) 123, 300
Tru9I TTAA 2 cut(s) 123, 300
TscAI CASTG 2 cut(s) 24, 339
TseI GCWGC 2 cut(s) 370, 527
TspGWI ACGGA 2 cut(s) 47, 54
TspRI CASTG 2 cut(s) 24, 339
Tth111I GACNNNGTC 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 122
XapI RAATTY 2 cut(s) 255, 302
XmiI GTMKAC 3 cut(s) 38, 233, 511
XspI CTAG 3 cut(s) 108, 269, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.