Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

21573733 .. 21576422

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1222700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTGTGGATATCTTGAGGTATTTGTGCACGGAGCAAAACATCAAGTATTTCTATGATATCAAGGATCTAAGTAATTTCAAGGCCAACCCAGGTTATAAGGGCGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCAGGGGAGGTTCTGCTGGGTACAGATTCTCATACATGTACTGCTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGAAATCTGATGCAGGATTTGTAGTAGGCACTGGGAATCTTCTGCTCAAGATTACTGGTGAAATATCTGTTGCTGGTGGAACATATAAAGCTATGGAGTTTGTTGGCAGCACTGTTGAAAGCTTATCTGATAAGACGTCTGTTCCCTATGAACCTGTTTACAGTGATGCTAAAGCAAGGTATGCTACTGATTATCCACATTTTATTAGACCATTTCATGATCCAGTTTATAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

153

Amino Acids

16.47

Weight (kDa)

5.91

Isoelectric Point (pI)

26.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	26 - 81	1.4e-13	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	99, 450
AatII	GACGTC	1 cut(s)	359
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	2 cut(s)	75, 434
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	2 cut(s)	166, 184
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	82, 338
AjnI	CCWGG	2 cut(s)	91, 145
AluBI	AGCT	3 cut(s)	194, 311, 342
AluI	AGCT	3 cut(s)	194, 311, 342
Alw21I	GWGCWC	1 cut(s)	32
Alw44I	GTGCAC	1 cut(s)	28
AlwI	GGATC	2 cut(s)	75, 434
AoxI	GGCC	2 cut(s)	84, 143
ApaLI	GTGCAC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	339
BciT130I	CCWGG	2 cut(s)	93, 147
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	93, 147
BmrFI	CCNGG	2 cut(s)	93, 147
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	220, 376
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	3 cut(s)	37, 111, 251
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	91, 146
Bse1I	ACTGG	4 cut(s)	217, 256, 280, 443
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	93, 147
BseDI	CCNNGG	2 cut(s)	91, 146
BseMI	GCAATG	1 cut(s)	136
BseNI	ACTGG	4 cut(s)	217, 256, 280, 443
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	86, 145
BsiHKAI	GWGCWC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	86, 145
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	67, 439
BspANI	GGCC	2 cut(s)	86, 145
BspHI	TCATGA	1 cut(s)	436
BspPI	GGATC	2 cut(s)	75, 434
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	4 cut(s)	217, 256, 280, 443
BssECI	CCNNGG	2 cut(s)	91, 146
BssMI	GATC	2 cut(s)	67, 439
BssNI	GRCGYC	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	93, 147
Bst4CI	ACNGT	2 cut(s)	334, 383
BstACI	GRCGYC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	70, 442
BstMBI	GATC	2 cut(s)	67, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	93, 147
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	91, 145
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	86, 145
BtsIMutI	CAGTG	3 cut(s)	249, 330, 388
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	165, 183
CviAII	CATG	3 cut(s)	113, 180, 437
CviJI	RGCY	5 cut(s)	86, 145, 194, 311, 342
CviKI_1	RGCY	5 cut(s)	86, 145, 194, 311, 342
CviQI	GTAC	2 cut(s)	165, 183
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	69, 441
DpnII	GATC	2 cut(s)	67, 439
Eco32I	GATATC	2 cut(s)	13, 61
EcoRII	CCWGG	2 cut(s)	91, 145
EcoRV	GATATC	2 cut(s)	13, 61
FaeI	CATG	3 cut(s)	116, 183, 440
FatI	CATG	3 cut(s)	112, 179, 436
Fnu4HI	GCNGC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	328
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	86, 145
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	116, 183, 440
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	170, 216, 256
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	30, 379
Hpy188I	TCNGA	2 cut(s)	229, 349
Hpy188III	TCNNGA	5 cut(s)	16, 128, 220, 268, 437
Hpy8I	GTNNAC	2 cut(s)	30, 379
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	334, 383
HpyCH4IV	ACGT	2 cut(s)	356, 453
HpyCH4V	TGCA	3 cut(s)	30, 141, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	356, 453
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	116, 183, 440
Kzo9I	GATC	2 cut(s)	67, 439
LmnI	GCTCC	2 cut(s)	34, 191
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	2 cut(s)	220, 376
MaeII	ACGT	2 cut(s)	356, 453
MalI	GATC	2 cut(s)	69, 441
MboI	GATC	2 cut(s)	67, 439
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	76, 203
MnlI	CCTC	2 cut(s)	12, 145
MspR9I	CCNGG	2 cut(s)	93, 147
MvaI	CCWGG	2 cut(s)	93, 147
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	2 cut(s)	67, 439
NlaIII	CATG	3 cut(s)	116, 183, 440
NspI	RCATGY	1 cut(s)	183
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	170, 216, 256
PkrI	GCNGC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	179
PsiI	TTATAA	2 cut(s)	99, 450
Psp1406I	AACGTT	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	91, 145
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	91, 145
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	166, 184
RsaNI	GTAC	2 cut(s)	165, 183
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	2 cut(s)	67, 439
ScrFI	CCNGG	2 cut(s)	93, 147
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	220, 376
SmlI	CTYRAG	3 cut(s)	16, 126, 266
SmoI	CTYRAG	3 cut(s)	16, 126, 266
Sse9I	AATT	2 cut(s)	76, 203
StyD4I	CCNGG	2 cut(s)	91, 145
TaaI	ACNGT	2 cut(s)	334, 383
TaiI	ACGT	2 cut(s)	359, 456
TasI	AATT	2 cut(s)	76, 203
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	3 cut(s)	170, 216, 256
TscAI	CASTG	3 cut(s)	256, 337, 388
TseI	GCWGC	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	384, 425
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	256, 337, 388
VneI	GTGCAC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	183
ZraI	GACGTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.