Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

15194670 .. 15197876

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGTTGATCCCCAGAACCACACTCACACTCCCCAGAACACTCCTCACCTTTCGATCCTTCTCCTGCAAAATGTCATCCGACTCGCCACCGTTGACTCACTCGCTCACTCTCCCGAGTCAACTCGCCGCCGACGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTACGCGACGGTTCTTTGGCTCTGAAACGAGTTGTAATTCAGGGTGTAGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTGGAAGCAGATGTGATTGATAAAGAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGACTTATGCTGTTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACTGCAATCCGTGAGGTGGAAGAAGAGACTGGCATATGCCTAAAACAAGAAGACATGGTGGACCTCACAGCCTTCCTCGACCAATCTACTGGATGCAGAATATTTCCTTCTCCTGGAGGGTGTGATGAAGAACTCAGCCTCTATCTGTACAGAGGGCAGGTGGATAAAGAGATTATTGATCAGCTGCAAGGTAAAGAAACAGGTCTTCGTGACCATGGAGAGCTGATTAGGGTTCGTGTGCTCCCTTATGAAAAACTCTGGCGCATGACAGCCGATGCAAAGGTTTTAACAGCCGTTGCACTCTATGAAATGGCAAAAAGAGAAGGGCTCTTGCCTCCCCTGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

297

Amino Acids

32.76

Weight (kDa)

5.45

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	132 - 273	7.1e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc36I	ACCTGC	1 cut(s)	691
AccII	CGCG	2 cut(s)	258, 396
AciI	CCGC	3 cut(s)	129, 159, 396
AclWI	GGATC	3 cut(s)	4, 51, 494
AcuI	CTGAAG	2 cut(s)	245, 350
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	474, 692
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	3 cut(s)	186, 559, 656
AjnI	CCWGG	2 cut(s)	376, 655
AluBI	AGCT	3 cut(s)	410, 727, 766
AluI	AGCT	3 cut(s)	410, 727, 766
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	3 cut(s)	4, 51, 494
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	115
Aor51HI	AGCGCT	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	727
AspLEI	GCGC	2 cut(s)	194, 807
AspS9I	GGNCC	2 cut(s)	398, 604
AsuHPI	GGTGA	2 cut(s)	40, 542
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	398, 604
BanII	GRGCYC	2 cut(s)	144, 873
BbsI	GAAGAC	2 cut(s)	600, 740
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	714
BceAI	ACGGC	1 cut(s)	821
BciT130I	CCWGG	2 cut(s)	378, 657
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	3 cut(s)	129, 159, 728
BlsI	GCNGC	3 cut(s)	130, 160, 729
Bme1390I	CCNGG	2 cut(s)	378, 657
Bme18I	GGWCC	2 cut(s)	398, 604
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	398, 604
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	378, 657
BmrI	ACTGGG	2 cut(s)	175, 255
BmsI	GCATC	2 cut(s)	626, 808
BmuI	ACTGGG	2 cut(s)	175, 255
BpiI	GAAGAC	2 cut(s)	600, 740
BplI	GAGNNNNNCTC	2 cut(s)	855, 887
BpmI	CTGGAG	2 cut(s)	515, 678
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	757
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 559, 656
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	5 cut(s)	181, 250, 498, 577, 637
BseBI	CCWGG	2 cut(s)	378, 657
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	3 cut(s)	77, 523, 641
BseLI	CCNNNNNNNGG	3 cut(s)	186, 559, 656
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	5 cut(s)	181, 250, 498, 577, 637
BseRI	GAGGAG	3 cut(s)	35, 163, 166
BseXI	GCAGC	1 cut(s)	714
Bsh1236I	CGCG	2 cut(s)	258, 396
BsiHKAI	GWGCWC	1 cut(s)	786
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	186, 559, 656
BsmAI	GTCTC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	3 cut(s)	144, 786, 873
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	5 cut(s)	9, 56, 150, 486, 721
Bsp19I	CCATGG	1 cut(s)	757
BspACI	CCGC	3 cut(s)	129, 159, 396
BspCNI	CTCAG	1 cut(s)	690
BspFNI	CGCG	2 cut(s)	258, 396
BspLI	GGNNCC	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	3 cut(s)	4, 51, 494
BsrFI	RCCGGY	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	5 cut(s)	181, 250, 498, 577, 637
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	5 cut(s)	9, 56, 150, 486, 721
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	2 cut(s)	378, 657
Bst4CI	ACNGT	2 cut(s)	93, 263
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	690
BstC8I	GCNNGC	2 cut(s)	394, 504
BstDEI	CTNAG	1 cut(s)	677
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	3 cut(s)	77, 523, 641
BstFNI	CGCG	2 cut(s)	258, 396
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	194, 807
BstKTI	GATC	5 cut(s)	12, 59, 153, 489, 724
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	5 cut(s)	9, 56, 150, 486, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	378, 657
BstSCI	CCNGG	2 cut(s)	376, 655
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	2 cut(s)	258, 396
BstV1I	GCAGC	1 cut(s)	714
BstV2I	GAAGAC	2 cut(s)	600, 740
BstXI	CCANNNNNNTGG	1 cut(s)	632
BtgI	CCRYGG	1 cut(s)	757
BtsCI	GGATG	3 cut(s)	77, 523, 641
BtsI	GCAGTG	2 cut(s)	224, 543
BtsIMutI	CAGTG	2 cut(s)	224, 543
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	2 cut(s)	394, 504
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	2 cut(s)	194, 807
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	398, 604
CpoI	CGGWCCG	1 cut(s)	398
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	473, 691
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	5 cut(s)	232, 598, 758, 808, 891
CviQI	GTAC	2 cut(s)	473, 691
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	5 cut(s)	11, 58, 152, 488, 723
DpnII	GATC	5 cut(s)	9, 56, 150, 486, 721
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	757
Eco24I	GRGCYC	2 cut(s)	144, 873
Eco47I	GGWCC	2 cut(s)	398, 604
Eco47III	AGCGCT	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	245, 350
Eco88I	CYCGRG	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	376, 655
EcoT14I	CCWWGG	1 cut(s)	757
EcoT38I	GRGCYC	2 cut(s)	144, 873
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	5 cut(s)	235, 601, 761, 811, 894
FatI	CATG	5 cut(s)	231, 597, 757, 807, 890
FauNDI	CATATG	1 cut(s)	578
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	129, 159, 728
FokI	GGATG	3 cut(s)	64, 530, 648
FriOI	GRGCYC	2 cut(s)	144, 873
Fsp4HI	GCNGC	3 cut(s)	129, 159, 728
GlaI	GCGC	2 cut(s)	193, 806
GluI	GCNGC	3 cut(s)	129, 159, 728
GsuI	CTGGAG	2 cut(s)	515, 678
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	194, 807
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	5 cut(s)	235, 601, 761, 811, 894
Hin6I	GCGC	2 cut(s)	192, 805
HinP1I	GCGC	2 cut(s)	192, 805
HincII	GTYRAC	2 cut(s)	96, 122
HindII	GTYRAC	2 cut(s)	96, 122
HinfI	GANTC	6 cut(s)	83, 97, 118, 200, 250, 428
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	40, 542
Hpy166II	GTNNAC	3 cut(s)	96, 122, 604
Hpy188I	TCNGA	4 cut(s)	82, 276, 330, 433
Hpy188III	TCNNGA	4 cut(s)	115, 148, 187, 752
Hpy8I	GTNNAC	3 cut(s)	96, 122, 604
Hpy99I	CGWCG	3 cut(s)	137, 158, 263
HpyAV	CCTTC	5 cut(s)	70, 477, 625, 660, 860
HpyCH4III	ACNGT	2 cut(s)	93, 263
HpyCH4V	TGCA	7 cut(s)	69, 392, 548, 639, 730, 821, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	677
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	5 cut(s)	235, 601, 761, 811, 894
HspAI	GCGC	2 cut(s)	192, 805
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	5 cut(s)	9, 56, 150, 486, 721
LmnI	GCTCC	2 cut(s)	189, 789
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	2 cut(s)	626, 808
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	5 cut(s)	11, 58, 152, 488, 723
MboI	GATC	5 cut(s)	9, 56, 150, 486, 721
MboII	GAAGA	6 cut(s)	238, 575, 578, 605, 683, 740
MhlI	GDGCHC	3 cut(s)	144, 786, 873
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	3 cut(s)	77, 91, 127
MmeI	TCCRAC	4 cut(s)	105, 315, 460, 495
MseI	TTAA	2 cut(s)	213, 830
MspA1I	CMGCKG	1 cut(s)	727
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	378, 657
MvaI	CCWGG	2 cut(s)	378, 657
MvnI	CGCG	2 cut(s)	258, 396
MwoI	GCNNNNNNNGC	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	757
NdeI	CATATG	1 cut(s)	578
NdeII	GATC	5 cut(s)	9, 56, 150, 486, 721
NlaIII	CATG	5 cut(s)	235, 601, 761, 811, 894
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	2 cut(s)	163, 519
NmuCI	GTSAC	1 cut(s)	752
PaqCI	CACCTGC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	200, 250, 428
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	130, 160, 729
PleI	GAGTC	3 cut(s)	77, 91, 126
PpsI	GAGTC	3 cut(s)	77, 91, 126
Psp6I	CCWGG	2 cut(s)	376, 655
PspGI	CCWGG	2 cut(s)	376, 655
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	398, 604
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	2 cut(s)	474, 692
RsaNI	GTAC	2 cut(s)	473, 691
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	213, 830
SatI	GCNGC	3 cut(s)	129, 159, 728
Sau3AI	GATC	5 cut(s)	9, 56, 150, 486, 721
Sau96I	GGNCC	2 cut(s)	398, 604
SchI	GAGTC	3 cut(s)	77, 91, 127
ScrFI	CCNGG	2 cut(s)	378, 657
SduI	GDGCHC	3 cut(s)	144, 786, 873
SfaNI	GCATC	2 cut(s)	626, 808
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	398, 604
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	129, 159, 396
SspI	AATATT	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	376, 655
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	2 cut(s)	93, 263
TaqI	TCGA	2 cut(s)	55, 621
TasI	AATT	1 cut(s)	288
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	2 cut(s)	131, 161
TfiI	GAWTC	3 cut(s)	200, 250, 428
Tru1I	TTAA	2 cut(s)	213, 830
Tru9I	TTAA	2 cut(s)	213, 830
TscAI	CASTG	2 cut(s)	224, 550
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	684, 807, 864
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	224, 550
VpaK11BI	GGWCC	2 cut(s)	398, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.