RchiOBHm_Chr6g0260271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000647
Physical Location & Seq
Reverse (-)
15344882 .. 15345206
325 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23340

Sequence Viewer

Length: 249 bp
ATGGCTGACGGAGTCGACCATAATGCCAAGAAGCACCGCGCGACGGCGTCGGAGCCTTTTCGATCATGGAGCTCAAAGCCTAGCTTTACCAGTCTCAAGAAGATTCCAAGAAGTACAAAGACCTCGCAGACCCCGACGCCGAGTTCCACCGCGCTAAGTAGAAGATCACCGCTCACGATGTCTTCTCTGCCAAGAACTCCGGCATCGACGCCTGGGCCCACAGGTGAAATTTGGATCGTTCTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.81

Weight (kDa)

11.41

Isoelectric Point (pI)

67.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 39, 41, 152
AciI CCGC 3 cut(s) 37, 150, 170
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 228
AcyI GRCGYC 3 cut(s) 47, 137, 209
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 43
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 72, 84
AluI AGCT 2 cut(s) 72, 84
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 215
ApaI GGGCCC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 228
AspLEI GCGC 2 cut(s) 41, 154
AspS9I GGNCC 2 cut(s) 215, 216
AsuHPI GGTGA 2 cut(s) 159, 236
BaeGI GKGCMC 1 cut(s) 219
BanII GRGCYC 2 cut(s) 74, 219
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 81, 242
Bme1390I CCNGG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 215, 216
BmiI GGNNCC 2 cut(s) 54, 217
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 80
BsaHI GRCGYC 3 cut(s) 47, 137, 209
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 219
Bsh1236I CGCG 3 cut(s) 39, 41, 152
BshFI GGCC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 217
Bsp120I GGGCCC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 74, 219
Bsp143I GATC 3 cut(s) 62, 164, 234
BspACI CCGC 3 cut(s) 37, 150, 170
BspANI GGCC 1 cut(s) 217
BspFNI CGCG 3 cut(s) 39, 41, 152
BspLI GGNNCC 2 cut(s) 54, 217
BspPI GGATC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 3 cut(s) 62, 164, 234
BssNI GRCGYC 3 cut(s) 47, 137, 209
Bst2UI CCWGG 1 cut(s) 213
BstACI GRCGYC 3 cut(s) 47, 137, 209
BstDEI CTNAG 1 cut(s) 155
BstFNI CGCG 3 cut(s) 39, 41, 152
BstHHI GCGC 2 cut(s) 41, 154
BstKTI GATC 3 cut(s) 65, 167, 237
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 62, 164, 234
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 3 cut(s) 39, 41, 152
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 217
CfoI GCGC 2 cut(s) 41, 154
Cfr13I GGNCC 2 cut(s) 215, 216
CseI GACGC 3 cut(s) 36, 145, 217
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 66
CviJI RGCY 6 cut(s) 5, 55, 72, 79, 84, 217
CviKI_1 RGCY 6 cut(s) 5, 55, 72, 79, 84, 217
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 155
DpnI GATC 3 cut(s) 64, 166, 236
DpnII GATC 3 cut(s) 62, 164, 234
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 2 cut(s) 74, 219
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 2 cut(s) 74, 219
FaeI CATG 1 cut(s) 69
FaiI YATR 2 cut(s) 21, 67
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 1 cut(s) 65
FblI GTMKAC 1 cut(s) 15
FriOI GRGCYC 2 cut(s) 74, 219
FspBI CTAG 2 cut(s) 81, 242
GlaI GCGC 2 cut(s) 40, 153
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 200
HgaI GACGC 3 cut(s) 36, 145, 217
HhaI GCGC 2 cut(s) 41, 154
Hin1I GRCGYC 3 cut(s) 47, 137, 209
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 2 cut(s) 39, 152
HinP1I GCGC 2 cut(s) 39, 152
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 12, 103
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 159, 236
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 97, 175
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 4 cut(s) 46, 52, 139, 211
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 3 cut(s) 47, 137, 209
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 2 cut(s) 39, 152
Kzo9I GATC 3 cut(s) 62, 164, 234
LmnI GCTCC 2 cut(s) 52, 69
LpnPI CCDG 5 cut(s) 103, 198, 207, 213, 225
LweI GCATC 1 cut(s) 212
MaeI CTAG 2 cut(s) 81, 242
MalI GATC 3 cut(s) 64, 166, 236
MbiI CCGCTC 1 cut(s) 172
MboI GATC 3 cut(s) 62, 164, 234
MboII GAAGA 3 cut(s) 112, 174, 174
MhlI GDGCHC 2 cut(s) 74, 219
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 1 cut(s) 133
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 3 cut(s) 39, 41, 152
NdeII GATC 3 cut(s) 62, 164, 234
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 2 cut(s) 54, 217
NmeAIII GCCGAG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 1 cut(s) 103
PflFI GACNNNGTC 2 cut(s) 11, 46
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 54, 217
PspOMI GGGCCC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 215, 216
PsyI GACNNNGTC 2 cut(s) 11, 46
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 74
SalI GTCGAC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 62, 164, 234
Sau96I GGNCC 2 cut(s) 215, 216
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 2 cut(s) 74, 219
SetI ASST 5 cut(s) 74, 86, 125, 226, 247
SfaNI GCATC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 228
SsiI CCGC 3 cut(s) 37, 150, 170
SspMI CTAG 2 cut(s) 81, 242
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 211
TaqI TCGA 3 cut(s) 15, 61, 206
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 24
Tth111I GACNNNGTC 2 cut(s) 11, 46
XapI RAATTY 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 81, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.