Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00027

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

445 .. 857

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

GATTTGGGTCTCTCTGCTTTCTCTTCCACGTCGCTGGCTTCATTTCCGAGATGCAAGAGATCACTTTCCAAGAAAATCTGCTCCGTCATATCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTAGCTTCATTTTTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

107

Amino Acids

11.5

Weight (kDa)

9.56

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	277
AjiI	CACGTC	2 cut(s)	30, 247
AjnI	CCWGG	2 cut(s)	199, 256
AluBI	AGCT	2 cut(s)	308, 321
AluI	AGCT	2 cut(s)	308, 321
Alw26I	GTCTC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	201, 258
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	201, 258
BmgBI	CACGTC	2 cut(s)	30, 247
BmgT120I	GGNCC	1 cut(s)	254
BmrFI	CCNGG	2 cut(s)	201, 258
BmsI	GCATC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	199, 256
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	201, 258
BseDI	CCNNGG	2 cut(s)	199, 256
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	199, 256
BssMI	GATC	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	201, 258
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	36, 117
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 305
BstNI	CCWGG	2 cut(s)	201, 258
BstSCI	CCNGG	2 cut(s)	199, 256
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	255
BtrI	CACGTC	2 cut(s)	30, 247
Cac8I	GCNNGC	2 cut(s)	36, 117
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	199, 256
EcoT38I	GRGCYC	1 cut(s)	200
FaeI	CATG	1 cut(s)	245
FaiI	YATR	2 cut(s)	89, 243
FatI	CATG	1 cut(s)	241
FriOI	GRGCYC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	270
HpaI	GTTAAC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	48, 106, 181
Hpy188III	TCNNGA	2 cut(s)	136, 277
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	29, 246
HpyCH4V	TGCA	2 cut(s)	54, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 305
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	29, 246
Hsp92II	CATG	1 cut(s)	245
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	86, 106
LpnPI	CCDG	7 cut(s)	20, 111, 129, 186, 213, 243, 270
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	2 cut(s)	29, 246
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	61
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	15, 172, 265
MfeI	CAATTG	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	1 cut(s)	191
MseI	TTAA	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	201, 258
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	201, 258
MwoI	GCNNNNNNNGC	2 cut(s)	106, 305
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	199, 256
PspGI	CCWGG	2 cut(s)	199, 256
PspPI	GGNCC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	201, 258
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	6 cut(s)	32, 205, 249, 306, 310, 323
SfaNI	GCATC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	199, 256
TaiI	ACGT	2 cut(s)	32, 249
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	30, 252, 300
TspGWI	ACGGA	2 cut(s)	73, 170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.