Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

9397754 .. 9400151

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG057900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACTTCAAAAACTTCAGAGGACCGGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAAGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGATTTTTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGACGTTAACTTTAGTTCATAATTTGGCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

7.77

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	141
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	10, 172
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	94, 151
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	148
AsiGI	ACCGGT	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	23, 149
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	96, 153
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	96, 153
Bme18I	GGWCC	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	23, 149
BmrFI	CCNGG	2 cut(s)	96, 153
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	94, 151
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	96, 153
BseDI	CCNNGG	2 cut(s)	94, 151
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	150
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	94, 151
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	96, 153
Bst4CI	ACNGT	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	261, 379
BstDEI	CTNAG	2 cut(s)	66, 75
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	96, 153
BstSCI	CCNGG	2 cut(s)	94, 151
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	261, 379
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	23, 149
Csp6I	GTAC	1 cut(s)	316
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	5 cut(s)	65, 71, 93, 150, 381
CviKI_1	RGCY	5 cut(s)	65, 71, 93, 150, 381
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	66, 75
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	95
Eco32I	GATATC	2 cut(s)	280, 328
Eco47I	GGWCC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	94, 151
EcoRV	GATATC	2 cut(s)	280, 328
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	1 cut(s)	140
FaiI	YATR	6 cut(s)	138, 227, 240, 242, 324, 369
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	2 cut(s)	115, 357
HindII	GTYRAC	2 cut(s)	115, 357
HinfI	GANTC	1 cut(s)	165
HpaI	GTTAAC	2 cut(s)	115, 357
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	115, 357
Hpy188I	TCNGA	2 cut(s)	20, 76
Hpy188III	TCNNGA	3 cut(s)	31, 172, 283
Hpy8I	GTNNAC	2 cut(s)	115, 357
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	141, 353
HpyCH4V	TGCA	3 cut(s)	194, 263, 297
HpyF3I	CTNAG	2 cut(s)	66, 75
HpySE526I	ACGT	2 cut(s)	141, 353
Hsp92II	CATG	1 cut(s)	140
KspAI	GTTAAC	2 cut(s)	115, 357
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	39, 81, 108, 138, 165, 243, 363
MaeII	ACGT	2 cut(s)	141, 353
MaeIII	GTNAC	2 cut(s)	98, 341
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	2 cut(s)	67, 160
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	86, 370
MnlI	CCTC	2 cut(s)	14, 279
MseI	TTAA	3 cut(s)	114, 348, 356
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	96, 153
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	2 cut(s)	96, 153
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	94, 151
PspGI	CCWGG	2 cut(s)	94, 151
PspPI	GGNCC	2 cut(s)	23, 149
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	114, 348, 356
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	23, 149
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	96, 153
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	5 cut(s)	100, 144, 201, 232, 356
SinI	GGWCC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	86, 370
StyD4I	CCNGG	2 cut(s)	94, 151
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	2 cut(s)	144, 356
TasI	AATT	2 cut(s)	86, 370
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	114, 348, 356
Tru9I	TTAA	3 cut(s)	114, 348, 356
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	17, 147, 356
TspGWI	ACGGA	2 cut(s)	65, 314
VpaK11BI	GGWCC	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.