Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003400.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

46149 .. 49163

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003400.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgttagtagatgagactaaacaacagtttaaatcatttcctaccatattgctccctaagaatcatgttgtactaatgagtttgttttcctatggatttagatttcttacagagtacagatttgatatctcaaaactggagccattggtggcaaagcctcattctccagataaccgtgctttagcaagagagtgcaaagatgtgaaaattgacagagtctatattggatcttgtactggtgggaaaacagaggattttatggcttctgctaaagtttttctagcttcagtttggatggacgtgtacagtcttccagtgccaggatcaggtggcaagacttgctcgcagatatttgaggaagctggttgtgacacacctgcaagtcccacttgtggtgcttgcatgggtggtcctagagacacttatgctctcttgaatgaaccacagatggtagaagccgtacccaaggcttttcaaggctcaagagccgaaattccctttcatggtattcctactgcagttcaagggccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

177

Amino Acids

19.34

Weight (kDa)

6.29

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	235, 331
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	5 cut(s)	72, 116, 235, 305, 462
AfiI	CCNNNNNNNGG	4 cut(s)	320, 326, 392, 503
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	436, 476, 524
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	2 cut(s)	284, 362
AluI	AGCT	2 cut(s)	284, 362
Alw26I	GTCTC	2 cut(s)	8, 411
AlwI	GGATC	2 cut(s)	235, 331
AoxI	GGCC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	410, 527
AvaII	GGWCC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	302
BccI	CCATC	2 cut(s)	289, 442
BceAI	ACGGC	2 cut(s)	443, 514
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	8, 411
BfaI	CTAG	2 cut(s)	281, 414
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	410
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	410, 527
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	150, 158
BpuEI	CTTGAG	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 326, 392, 503
Bse1I	ACTGG	3 cut(s)	141, 241, 314
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	4 cut(s)	320, 326, 392, 503
BseNI	ACTGG	3 cut(s)	141, 241, 314
BshFI	GGCC	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	4 cut(s)	320, 326, 392, 503
BsmAI	GTCTC	2 cut(s)	8, 411
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	529
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	227, 323
BspANI	GGCC	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	235, 331
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	141, 241, 314
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	227, 323
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	27, 176, 308
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	344, 400
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	230, 326
BstMAI	GTCTC	2 cut(s)	8, 411
BstMBI	GATC	2 cut(s)	227, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	529
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	344, 400
Cfr13I	GGNCC	2 cut(s)	410, 527
Csp6I	GTAC	5 cut(s)	71, 115, 234, 304, 461
CviAII	CATG	3 cut(s)	65, 403, 503
CviQI	GTAC	5 cut(s)	71, 115, 234, 304, 461
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	229, 325
DpnII	GATC	2 cut(s)	227, 323
DraI	TTTAAA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	68, 406, 506
FaiI	YATR	8 cut(s)	47, 66, 93, 222, 260, 404, 426, 504
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	64, 402, 502
FokI	GGATG	1 cut(s)	307
FspBI	CTAG	2 cut(s)	281, 414
GsuI	CTGGAG	2 cut(s)	150, 158
HaeIII	GGCC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	68, 406, 506
HinfI	GANTC	2 cut(s)	61, 216
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188III	TCNNGA	3 cut(s)	167, 433, 483
Hpy8I	GTNNAC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	27, 176, 308
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	195, 380, 402, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	68, 406, 506
Kzo9I	GATC	2 cut(s)	227, 323
LmnI	GCTCC	2 cut(s)	57, 139
LpnPI	CCDG	9 cut(s)	122, 180, 222, 306, 312, 327, 333, 348, 390
MaeI	CTAG	2 cut(s)	281, 414
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	229, 325
MboI	GATC	2 cut(s)	227, 323
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	2 cut(s)	207, 492
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	168, 244, 349
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	227, 323
NlaIII	CATG	3 cut(s)	68, 406, 506
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	410, 527
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	5 cut(s)	72, 116, 235, 305, 462
RsaNI	GTAC	5 cut(s)	71, 115, 234, 304, 461
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	227, 323
Sau96I	GGNCC	2 cut(s)	410, 527
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	5 cut(s)	286, 303, 331, 364, 379
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	2 cut(s)	207, 492
SspMI	CTAG	2 cut(s)	281, 414
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	27, 176, 308
TaiI	ACGT	1 cut(s)	303
TasI	AATT	2 cut(s)	207, 492
TatI	WGTACW	4 cut(s)	70, 114, 233, 303
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	453, 491
TspRI	CASTG	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	492
XspI	CTAG	2 cut(s)	281, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.