Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

13095537 .. 13099796

Gene Structure 4260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG061500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGCTTACTCCACTGTTGCTCCATCCTTCACCTCCTTCATCAACAAAAACACCAAGAAGGATTTGGATCTCTCTGCTTTCTCTTCCACATCGCCGGCTTCATTTCAGGGATGCAAGGGATCGGTCTCCAAGAAAATCTGCTCTGTCATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGAATGACGATGACCGAGAAAATATTGGCTAGGGCTTCTGAGAAAACCCATTTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTCTGATGACCCATGATGTCTGTGGCCCTGGTTCCTTTGGAATCTTCAAGAAAGAGTTTGGCCAGAATGCTAAGGTTTGGGATCGAGAAAAGATTGTAGTCATACCTGACCATTATATATTCACTACTGATGAGCGTGCAAACCGTAATGTGGATACCTTGAGGGATTTCTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTCAGGCTAACCCAGATTACAAGGGTGTATGCCATATTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTGCTGCTGGGTACAGATTCTCACACCTGCACCACTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGATCACTGATGCTGGTTTCGTATTGGGCACTGGGAAACTGTTGCTCAAGGTGCCTCCAACTCTGAGATTTGTGCTGGATGGTGAAATGCCTGACTATTTGCTTGCCAAAGACTTGATTTTACAAATTATTGGTGAAATCTCTGTTGCTGGTGCAACATATAAAGCTATGGAGTTTGTTGGAAGCACTGTTGAAGCCTTAAGTATGGAAGAGAGGATGACATTATGCAACATGGTTATTGAAGCTGGGGGTAAAAATGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGCCTCATTCTCCAGATAACCGTGCTTTAGCGAGAGAGTGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTAGCTTCAGGAAAGAAGGTCAAAGTACCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCACCTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGGTATGTGTCTCTACTACGAACAGGAACTTCCCCGGCAGAATGGGCCACAAGGAAGGCCAGATATATCTTGCTTCACCATATACAGCTGCAGCATCTGCTTTGACAGGTTATGTCACCGACCCAAGAGAGTTTTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

476

Amino Acids

51.54

Weight (kDa)

6.75

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	83 - 321	1.2e-50	Aconitase family (aconitate hydratase)
Aconitase	PF00330	328 - 466	5.2e-26	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	620, 1228
Acc36I	ACCTGC	3 cut(s)	620, 1126, 1228
AccB1I	GGYRCC	2 cut(s)	151, 703
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	7 cut(s)	75, 127, 378, 507, 662, 1030, 1174
AcoI	YGGCCR	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	1065
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	7 cut(s)	482, 598, 944, 1030, 1101, 1116, 1148
AfiI	CCNNNNNNNGG	4 cut(s)	439, 1163, 1169, 1235
AflII	CTTAAG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	1143
AgsI	TTSAA	4 cut(s)	337, 845, 893, 1279
AjiI	CACGTC	1 cut(s)	1144
AjnI	CCWGG	4 cut(s)	259, 316, 577, 1162
AluBI	AGCT	6 cut(s)	626, 818, 896, 1079, 1205, 1376
AluI	AGCT	6 cut(s)	626, 818, 896, 1079, 1205, 1376
Alw26I	GTCTC	3 cut(s)	130, 1254, 1303
AlwI	GGATC	7 cut(s)	75, 127, 378, 507, 662, 1030, 1174
AlwNI	CAGNNNCTG	1 cut(s)	1385
AoxI	GGCC	5 cut(s)	313, 349, 575, 1333, 1345
ApeKI	GCWGC	5 cut(s)	589, 1058, 1061, 1376, 1379
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	314, 1253, 1333
AsuC2I	CCSGG	1 cut(s)	1323
AsuHPI	GGTGA	6 cut(s)	22, 275, 746, 797, 1356, 1396
AvaII	GGWCC	1 cut(s)	1253
BaeGI	GKGCMC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	2 cut(s)	151, 703
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	1145
BbvI	GCAGC	5 cut(s)	576, 1045, 1048, 1363, 1391
BccI	CCATC	3 cut(s)	31, 725, 1132
BciT130I	CCWGG	4 cut(s)	261, 318, 579, 1164
BciVI	GTATCC	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	1323
BcoDI	GTCTC	3 cut(s)	130, 1254, 1303
BfaI	CTAG	3 cut(s)	231, 1076, 1257
BfmI	CTRYAG	1 cut(s)	1377
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	850
BfuAI	ACCTGC	3 cut(s)	620, 1126, 1228
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	5 cut(s)	590, 1059, 1062, 1377, 1380
BlsI	GCNGC	5 cut(s)	591, 1060, 1063, 1378, 1381
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	5 cut(s)	261, 318, 579, 1164, 1323
Bme18I	GGWCC	1 cut(s)	1253
BmgBI	CACGTC	1 cut(s)	1144
BmgT120I	GGNCC	3 cut(s)	314, 1253, 1333
BmiI	GGNNCC	3 cut(s)	153, 322, 705
BmrFI	CCNGG	5 cut(s)	261, 318, 579, 1164, 1323
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	101, 652, 1391
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	1145
BpmI	CTGGAG	3 cut(s)	600, 642, 945
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	4 cut(s)	469, 543, 683, 968
BpuMI	CCSGG	1 cut(s)	1323
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	259, 316, 1321
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	439, 1163, 1169, 1235
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	6 cut(s)	190, 625, 649, 688, 1036, 1157
Bse3DI	GCAATG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	4 cut(s)	261, 318, 579, 1164
BseDI	CCNNGG	3 cut(s)	259, 316, 1321
BseGI	GGATG	5 cut(s)	23, 116, 736, 873, 1143
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	439, 1163, 1169, 1235
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	231, 707
BseNI	ACTGG	6 cut(s)	190, 625, 649, 688, 1036, 1157
BseSI	GKGCMC	1 cut(s)	683
BseXI	GCAGC	5 cut(s)	576, 1045, 1048, 1363, 1391
BseYI	CCCAGC	2 cut(s)	592, 896
BsgI	GTGCAG	2 cut(s)	445, 598
BshFI	GGCC	5 cut(s)	315, 351, 577, 1335, 1347
BshNI	GGYRCC	2 cut(s)	151, 703
BsiSI	CCGG	2 cut(s)	95, 1323
BslFI	GGGAC	2 cut(s)	902, 1212
BslI	CCNNNNNNNGG	4 cut(s)	439, 1163, 1169, 1235
BsmAI	GTCTC	3 cut(s)	130, 1254, 1303
BsmFI	GGGAC	2 cut(s)	902, 1212
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	315, 351, 577, 1335, 1347
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	260, 683
Bsp1407I	TGTACA	1 cut(s)	1146
Bsp143I	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	5 cut(s)	315, 351, 577, 1335, 1347
BspCNI	CTCAG	2 cut(s)	232, 708
BspLI	GGNNCC	3 cut(s)	153, 322, 705
BspMAI	CTGCAG	1 cut(s)	1381
BspMI	ACCTGC	3 cut(s)	620, 1126, 1228
BspPI	GGATC	7 cut(s)	75, 127, 378, 507, 662, 1030, 1174
BspT107I	GGYRCC	2 cut(s)	151, 703
BspTI	CTTAAG	1 cut(s)	850
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	1146
BsrI	ACTGG	6 cut(s)	190, 625, 649, 688, 1036, 1157
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	259, 316, 1321
BssMI	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	4 cut(s)	261, 318, 579, 1164
Bst4CI	ACNGT	6 cut(s)	16, 434, 693, 841, 971, 1151
Bst6I	CTCTTC	2 cut(s)	88, 855
BstACI	GRCGYC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	850
BstAPI	GCANNNNNTGC	2 cut(s)	1182, 1385
BstAUI	TGTACA	1 cut(s)	1146
BstC8I	GCNNGC	8 cut(s)	96, 177, 426, 575, 756, 1187, 1243, 1273
BstDEI	CTNAG	3 cut(s)	240, 360, 716
BstF5I	GGATG	5 cut(s)	23, 116, 736, 873, 1143
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	7 cut(s)	70, 122, 373, 502, 657, 1025, 1169
BstMAI	GTCTC	3 cut(s)	130, 1254, 1303
BstMBI	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 703, 1182, 1332, 1385
BstNI	CCWGG	4 cut(s)	261, 318, 579, 1164
BstSCI	CCNGG	5 cut(s)	259, 316, 577, 1162, 1321
BstSFI	CTRYAG	1 cut(s)	1377
BstSLI	GKGCMC	1 cut(s)	683
BstV1I	GCAGC	5 cut(s)	576, 1045, 1048, 1363, 1391
BstV2I	GAAGAC	1 cut(s)	1145
BstX2I	RGATCY	3 cut(s)	67, 499, 1022
BstYI	RGATCY	3 cut(s)	67, 499, 1022
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	5 cut(s)	315, 351, 577, 1335, 1347
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	1144
BtsCI	GGATG	5 cut(s)	23, 116, 736, 873, 1143
BtsIMutI	CAGTG	6 cut(s)	12, 618, 657, 681, 837, 1164
BveI	ACCTGC	3 cut(s)	620, 1126, 1228
Cac8I	GCNNGC	8 cut(s)	96, 177, 426, 575, 756, 1187, 1243, 1273
CaiI	CAGNNNCTG	1 cut(s)	1385
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	314, 1253, 1333
Csp6I	GTAC	7 cut(s)	481, 597, 943, 1029, 1100, 1115, 1147
CspCI	CAANNNNNGTGG	2 cut(s)	1093, 1128
CviAII	CATG	4 cut(s)	148, 302, 883, 1246
CviQI	GTAC	7 cut(s)	481, 597, 943, 1029, 1100, 1115, 1147
DdeI	CTNAG	3 cut(s)	240, 360, 716
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	7 cut(s)	69, 121, 372, 501, 656, 1024, 1168
DpnII	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	88, 855
EarI	CTCTTC	2 cut(s)	88, 855
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	1253
Eco57I	CTGAAG	1 cut(s)	1065
EcoRII	CCWGG	4 cut(s)	259, 316, 577, 1162
EcoRV	GATATC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	4 cut(s)	151, 305, 886, 1249
FaqI	GGGAC	2 cut(s)	902, 1212
FatI	CATG	4 cut(s)	147, 301, 882, 1245
Fnu4HI	GCNGC	5 cut(s)	590, 1059, 1062, 1377, 1380
FokI	GGATG	5 cut(s)	10, 123, 743, 880, 1150
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	5 cut(s)	590, 1059, 1062, 1377, 1380
FspBI	CTAG	3 cut(s)	231, 1076, 1257
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	590, 1059, 1062, 1377, 1380
GsaI	CCCAGC	2 cut(s)	596, 900
GsuI	CTGGAG	3 cut(s)	600, 642, 945
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	5 cut(s)	315, 351, 577, 1335, 1347
HapII	CCGG	2 cut(s)	95, 1323
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	151, 305, 886, 1249
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	330, 602, 648, 1011
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	95, 1323
HphI	GGTGA	6 cut(s)	22, 275, 746, 797, 1356, 1396
Hpy166II	GTNNAC	2 cut(s)	280, 1147
Hpy188I	TCNGA	4 cut(s)	166, 241, 294, 717
Hpy188III	TCNNGA	7 cut(s)	196, 337, 374, 560, 652, 962, 1083
Hpy8I	GTNNAC	2 cut(s)	280, 1147
HpyAV	CCTTC	6 cut(s)	37, 46, 52, 557, 1084, 1337
HpyCH4III	ACNGT	6 cut(s)	16, 434, 693, 841, 971, 1151
HpyCH4IV	ACGT	1 cut(s)	1143
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 703, 1182, 1332, 1385
HpyF3I	CTNAG	3 cut(s)	240, 360, 716
HpySE526I	ACGT	1 cut(s)	1143
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	151, 305, 886, 1249
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
LmnI	GCTCC	4 cut(s)	25, 166, 466, 623
Lsp1109I	GCAGC	5 cut(s)	576, 1045, 1048, 1363, 1391
LweI	GCATC	3 cut(s)	101, 652, 1391
MaeI	CTAG	3 cut(s)	231, 1076, 1257
MaeII	ACGT	1 cut(s)	1143
MaeIII	GTNAC	4 cut(s)	263, 506, 1211, 1402
MalI	GATC	7 cut(s)	69, 121, 372, 501, 656, 1024, 1168
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
MboII	GAAGA	4 cut(s)	75, 325, 872, 1145
MflI	RGATCY	3 cut(s)	67, 499, 1022
MhlI	GDGCHC	2 cut(s)	260, 683
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	3 cut(s)	635, 777, 1002
MluNI	TGGCCA	1 cut(s)	351
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	1020
MmeI	TCCRAC	2 cut(s)	734, 811
MnlI	CCTC	8 cut(s)	43, 444, 577, 717, 858, 963, 1039, 1192
Mox20I	TGGCCA	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	3 cut(s)	279, 851, 1429
MslI	CAYNNNNRTG	1 cut(s)	1291
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	1376
MspCI	CTTAAG	1 cut(s)	850
MspI	CCGG	2 cut(s)	95, 1323
MspR9I	CCNGG	5 cut(s)	261, 318, 579, 1164, 1323
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	4 cut(s)	261, 318, 579, 1164
MwoI	GCNNNNNNNGC	5 cut(s)	166, 703, 1182, 1332, 1385
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	1323
NdeII	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	151, 305, 886, 1249
NlaIV	GGNNCC	3 cut(s)	153, 322, 705
NmuCI	GTSAC	3 cut(s)	263, 1211, 1402
PaqCI	CACCTGC	2 cut(s)	620, 1228
PceI	AGGCCT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	330, 602, 648
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	5 cut(s)	591, 1060, 1063, 1378, 1381
PleI	GAGTC	1 cut(s)	1019
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	1019
Psp6I	CCWGG	4 cut(s)	259, 316, 577, 1162
PspFI	CCCAGC	2 cut(s)	592, 896
PspGI	CCWGG	4 cut(s)	259, 316, 577, 1162
PspN4I	GGNNCC	3 cut(s)	153, 322, 705
PspPI	GGNCC	3 cut(s)	314, 1253, 1333
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstI	CTGCAG	1 cut(s)	1381
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	3 cut(s)	67, 499, 1022
PsyI	GACNNNGTC	1 cut(s)	1010
PvuII	CAGCTG	1 cut(s)	1376
RsaI	GTAC	7 cut(s)	482, 598, 944, 1030, 1101, 1116, 1148
RsaNI	GTAC	7 cut(s)	481, 597, 943, 1029, 1100, 1115, 1147
RseI	CAYNNNNRTG	1 cut(s)	1291
SaqAI	TTAA	3 cut(s)	279, 851, 1429
SatI	GCNGC	5 cut(s)	590, 1059, 1062, 1377, 1380
Sau3AI	GATC	7 cut(s)	67, 119, 370, 499, 654, 1022, 1166
Sau96I	GGNCC	3 cut(s)	314, 1253, 1333
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	1020
ScrFI	CCNGG	5 cut(s)	261, 318, 579, 1164, 1323
SduI	GDGCHC	2 cut(s)	260, 683
SfaNI	GCATC	3 cut(s)	101, 652, 1391
SfcI	CTRYAG	1 cut(s)	1377
SfoI	GGCGCC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	1253
SmiMI	CAYNNNNRTG	1 cut(s)	1291
SmlI	CTYRAG	5 cut(s)	448, 558, 698, 850, 947
SmoI	CTYRAG	5 cut(s)	448, 558, 698, 850, 947
Sse9I	AATT	3 cut(s)	635, 777, 1002
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	1 cut(s)	169
SspDI	GGCGCC	1 cut(s)	151
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	3 cut(s)	231, 1076, 1257
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	5 cut(s)	259, 316, 577, 1162, 1321
TaaI	ACNGT	6 cut(s)	16, 434, 693, 841, 971, 1151
TaiI	ACGT	1 cut(s)	1146
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	3 cut(s)	112, 181, 230
TasI	AATT	3 cut(s)	635, 777, 1002
TatI	WGTACW	3 cut(s)	480, 1028, 1146
TfiI	GAWTC	3 cut(s)	330, 602, 648
Tru1I	TTAA	3 cut(s)	279, 851, 1429
Tru9I	TTAA	3 cut(s)	279, 851, 1429
TscAI	CASTG	6 cut(s)	19, 625, 664, 688, 844, 1164
TseFI	GTSAC	3 cut(s)	263, 1211, 1402
TseI	GCWGC	5 cut(s)	589, 1058, 1061, 1376, 1379
Tsp45I	GTSAC	3 cut(s)	263, 1211, 1402
TspDTI	ATGAA	3 cut(s)	28, 90, 1296
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	6 cut(s)	19, 625, 664, 688, 844, 1164
Tth111I	GACNNNGTC	1 cut(s)	1010
Vha464I	CTTAAG	1 cut(s)	850
VpaK11BI	GGWCC	1 cut(s)	1253
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 308
XspI	CTAG	3 cut(s)	231, 1076, 1257
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.