RLG00000019332

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000647
Physical Location & Seq
Forward (+)
50429566 .. 50432067
2502 bp
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UTR
Exon/CDS
Intron
RLM00000019332

Sequence Viewer

Length: 495 bp
ATGGCAAAAACAGGGTCAAGGATTAGAAACTCCATAAGTGGAACCCCTGCAAGCATCTGCCGAGAGCTGCCGACATCTGCCGAGAAGCCCAGCGAGCACCTGCCGAGAGCTGCCGAGCACCTGCCGAGAGCTGCCGAGCATCTGCCGAGCACCTGCCGACACCTGCCGACACCTGCCGACACCTGCCGAGCAGCTGCCGACACCTGCCGAGACCTGCCGAGCAACTGCCGAGAGCTGCCGAGCATCTGCCGAGCACCTGCCGACACCTGCCGACACCTGCCGACACCTGCCGAGCAGCTGCCGACACCTGCCGAGCAGCTGCCGACACCTACCGAGACCTGCCGACACCTGCCGACACCTGCCGAGCACCTGCCGAGCAGCTGCCGAGCACCTGCCGAGCACCTGCCGACACCTGCCGACACCTGCCGAGCATCTGCCGAGACCTGCCGAGCACCTGCCGAGACCTGTCGACACCTGCCGAGCACCTGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.64

Weight (kDa)

7.56

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 469
AluBI AGCT 8 cut(s) 67, 110, 131, 194, 235, 298, 319, 381
AluI AGCT 8 cut(s) 67, 110, 131, 194, 235, 298, 319, 381
Alw21I GWGCWC 9 cut(s) 99, 120, 152, 256, 369, 391, 402, 454, 485
Alw26I GTCTC 4 cut(s) 204, 329, 434, 455
ArsI GACNNNNNNTTYG 1 cut(s) 31
Bbv12I GWGCWC 9 cut(s) 99, 120, 152, 256, 369, 391, 402, 454, 485
BcoDI GTCTC 4 cut(s) 204, 329, 434, 455
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 4 cut(s) 63, 148, 252, 440
BsaI GGTCTC 4 cut(s) 204, 329, 434, 455
BseYI CCCAGC 1 cut(s) 89
BsiHKAI GWGCWC 9 cut(s) 99, 120, 152, 256, 369, 391, 402, 454, 485
BsmAI GTCTC 4 cut(s) 204, 329, 434, 455
Bso31I GGTCTC 4 cut(s) 204, 329, 434, 455
Bsp1286I GDGCHC 9 cut(s) 99, 120, 152, 256, 369, 391, 402, 454, 485
BspLI GGNNCC 1 cut(s) 43
BspTNI GGTCTC 4 cut(s) 204, 329, 434, 455
BstC8I GCNNGC 2 cut(s) 52, 95
BstMAI GTCTC 4 cut(s) 204, 329, 434, 455
BstMWI GCNNNNNNNGC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 52, 95
CviJI RGCY 9 cut(s) 67, 88, 110, 131, 194, 235, 298, 319, 381
CviKI_1 RGCY 9 cut(s) 67, 88, 110, 131, 194, 235, 298, 319, 381
Eco31I GGTCTC 4 cut(s) 204, 329, 434, 455
FaiI YATR 1 cut(s) 35
FblI GTMKAC 1 cut(s) 469
GsaI CCCAGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 470
Hpy8I GTNNAC 1 cut(s) 470
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
LweI GCATC 4 cut(s) 63, 148, 252, 440
MhlI GDGCHC 9 cut(s) 99, 120, 152, 256, 369, 391, 402, 454, 485
MspA1I CMGCKG 4 cut(s) 194, 298, 319, 381
MwoI GCNNNNNNNGC 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 43
PvuII CAGCTG 4 cut(s) 194, 298, 319, 381
SalI GTCGAC 1 cut(s) 468
SduI GDGCHC 9 cut(s) 99, 120, 152, 256, 369, 391, 402, 454, 485
SfaNI GCATC 4 cut(s) 63, 148, 252, 440
TaqI TCGA 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.