Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

8901269 .. 8905811

Gene Structure 4543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGCTTACTCCACTGTTGCTCCACCCTTCAACTCCTTCATCAACAACATCACCAAGAAGTATTTGGATCTCTCTGCTTTCTCTTCCACATCGCCGGCTTCATTTCAGAGATGCAAGGGATCGGTCTCCAAGAAAATTTGCTCTGTCATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTTAGTACGGTTTTATTTGGTGTTCTTGGGTTAATGGGAATCTTAGTTTTCCCTGTTTTTGATATTGAGTTCTGGTCGACTTTGCAGGTCAAGACGGGAATGACGATGACCGAGAAAATATTGGCTAGGGCTTCTGAGAAAACCCATTTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTCTGATGACCCATGATGTCTGTGGCCCTGGTTCCTTTGCAATCTTCAAGAAAGAGTTTGGCCAGAATGCTAAGGTTTGGGACCGAGAAAAGATTGTAGTCATACCTGACCATTATATATTCACTACTGATGAGCGTGCAAACCGTAATGTGGATACCTTGAGGGATTTCTGCATGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTCAGGCTAACCCAGATTACAAGGGTGTATGCCATATTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTACTGTTCTTAAAAAAGCCCAATATATTTTTATGGCTTTATGATCCAAAACAGCAATCAGACGTTTTGTGTTGGCTTCAGGTGCTGCTGGGTACAGATTCTCACACCTGCACCACTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGATCACTGATGCTGGTTTCGTATTGGGCACTGGGAAACTTTTGCTCAAGGTGCCTCCAACTCTGAGATTTGTGCTGGATGGTGAAATGCCTGACTATTTGCTTGCCAAAGACTTGATTTTACAAATTATTGGTGAAATCTCTGTTGCTGGTGCAACATATAAAGCTATGGAGTTTGTTGGAAGCACTGTTGAAGGCTTAAGTATGGAAGAGAGGATGACATTATGCAACATGGTTATTGAAGCTGGGGGTAAAAATGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGCCTCATTCTCCAGATAACCGTGCTTTAGCAAGAGAGTGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTAGCTTCAGTTTGGATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGAAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAATCCCACTTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGGTATGTGTCTCTACTACGAACAGGAACTTCCCCGGCAGAATGGGCCACAAGGAAGGCCAGATATATCTTGCTTCACCATATACAGCTGCAGCATCTGCTTTGACCGGTTATGTCACCGACCCAAGAGAGTTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

516

Amino Acids

56.55

Weight (kDa)

5.97

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	103 - 376	1.9e-45	Aconitase family (aconitate hydratase)
Aconitase	PF00330	384 - 506	6.1e-23	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	788, 1348
Acc36I	ACCTGC	3 cut(s)	268, 788, 1348
AccB1I	GGYRCC	2 cut(s)	151, 871
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	7 cut(s)	75, 127, 594, 710, 830, 1198, 1294
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	2 cut(s)	734, 1233
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	7 cut(s)	199, 569, 675, 766, 1112, 1198, 1268
AfiI	CCNNNNNNNGG	4 cut(s)	526, 1283, 1289, 1355
AflII	CTTAAG	1 cut(s)	1018
AflIII	ACRYGT	1 cut(s)	1263
AgeI	ACCGGT	1 cut(s)	1514
AgsI	TTSAA	5 cut(s)	31, 424, 1013, 1061, 1399
AjiI	CACGTC	1 cut(s)	1264
AjnI	CCWGG	4 cut(s)	346, 403, 664, 1282
AluBI	AGCT	6 cut(s)	794, 986, 1064, 1247, 1325, 1496
AluI	AGCT	6 cut(s)	794, 986, 1064, 1247, 1325, 1496
Alw26I	GTCTC	3 cut(s)	130, 1374, 1423
AlwI	GGATC	7 cut(s)	75, 127, 594, 710, 830, 1198, 1294
AlwNI	CAGNNNCTG	2 cut(s)	757, 1505
AoxI	GGCC	5 cut(s)	400, 436, 662, 1453, 1465
ApeKI	GCWGC	5 cut(s)	757, 1226, 1229, 1496, 1499
ApoI	RAATTY	1 cut(s)	135
AsiGI	ACCGGT	1 cut(s)	1514
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	4 cut(s)	401, 457, 1373, 1453
AsuC2I	CCSGG	1 cut(s)	1443
AsuHPI	GGTGA	6 cut(s)	43, 362, 914, 965, 1476, 1516
AvaII	GGWCC	2 cut(s)	457, 1373
BaeGI	GKGCMC	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	151, 871
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	1265
BbvI	GCAGC	5 cut(s)	744, 1213, 1216, 1483, 1511
BccI	CCATC	2 cut(s)	893, 1252
BciT130I	CCWGG	4 cut(s)	348, 405, 666, 1284
BciVI	GTATCC	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	1443
BcoDI	GTCTC	3 cut(s)	130, 1374, 1423
BfaI	CTAG	3 cut(s)	318, 1244, 1377
BfmI	CTRYAG	1 cut(s)	1497
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	1018
BfuAI	ACCTGC	3 cut(s)	268, 788, 1348
BfuI	GTATCC	1 cut(s)	523
BisI	GCNGC	5 cut(s)	758, 1227, 1230, 1497, 1500
BlsI	GCNGC	5 cut(s)	759, 1228, 1231, 1498, 1501
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	5 cut(s)	348, 405, 666, 1284, 1443
Bme18I	GGWCC	2 cut(s)	457, 1373
BmgBI	CACGTC	1 cut(s)	1264
BmgT120I	GGNCC	4 cut(s)	401, 457, 1373, 1453
BmiI	GGNNCC	4 cut(s)	153, 409, 458, 873
BmrFI	CCNGG	5 cut(s)	348, 405, 666, 1284, 1443
BmrI	ACTGGG	1 cut(s)	861
BmsI	GCATC	3 cut(s)	101, 820, 1511
BmuI	ACTGGG	1 cut(s)	861
BpiI	GAAGAC	1 cut(s)	1265
BpmI	CTGGAG	3 cut(s)	687, 810, 1113
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	4 cut(s)	556, 630, 851, 1136
BpuMI	CCSGG	1 cut(s)	1443
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	346, 403, 1441
BsaWI	WCCGGW	1 cut(s)	1514
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	526, 1283, 1289, 1355
Bse118I	RCCGGY	2 cut(s)	94, 1514
Bse1I	ACTGG	6 cut(s)	190, 793, 817, 856, 1204, 1277
Bse3DI	GCAATG	1 cut(s)	655
BseBI	CCWGG	4 cut(s)	348, 405, 666, 1284
BseDI	CCNNGG	3 cut(s)	346, 403, 1441
BseGI	GGATG	3 cut(s)	904, 1041, 1263
BseLI	CCNNNNNNNGG	4 cut(s)	526, 1283, 1289, 1355
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	318, 875
BseNI	ACTGG	6 cut(s)	190, 793, 817, 856, 1204, 1277
BseSI	GKGCMC	1 cut(s)	851
BseXI	GCAGC	5 cut(s)	744, 1213, 1216, 1483, 1511
BseYI	CCCAGC	2 cut(s)	760, 1064
BsgI	GTGCAG	1 cut(s)	766
BshFI	GGCC	5 cut(s)	402, 438, 664, 1455, 1467
BshNI	GGYRCC	2 cut(s)	151, 871
BshTI	ACCGGT	1 cut(s)	1514
BsiSI	CCGG	3 cut(s)	95, 1443, 1515
BslFI	GGGAC	2 cut(s)	470, 1070
BslI	CCNNNNNNNGG	4 cut(s)	526, 1283, 1289, 1355
BsmAI	GTCTC	3 cut(s)	130, 1374, 1423
BsmFI	GGGAC	2 cut(s)	470, 1070
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	5 cut(s)	402, 438, 664, 1455, 1467
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	347, 851
Bsp1407I	TGTACA	1 cut(s)	1266
Bsp143I	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	5 cut(s)	402, 438, 664, 1455, 1467
BspCNI	CTCAG	2 cut(s)	319, 876
BspLI	GGNNCC	4 cut(s)	153, 409, 458, 873
BspMAI	CTGCAG	1 cut(s)	1501
BspMI	ACCTGC	3 cut(s)	268, 788, 1348
BspPI	GGATC	7 cut(s)	75, 127, 594, 710, 830, 1198, 1294
BspT107I	GGYRCC	2 cut(s)	151, 871
BspTI	CTTAAG	1 cut(s)	1018
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	2 cut(s)	94, 1514
BsrGI	TGTACA	1 cut(s)	1266
BsrI	ACTGG	6 cut(s)	190, 793, 817, 856, 1204, 1277
BssAI	RCCGGY	2 cut(s)	94, 1514
BssECI	CCNNGG	3 cut(s)	346, 403, 1441
BssMI	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	4 cut(s)	348, 405, 666, 1284
Bst4CI	ACNGT	7 cut(s)	16, 202, 521, 678, 1009, 1139, 1271
Bst6I	CTCTTC	2 cut(s)	88, 1023
BstACI	GRCGYC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	1018
BstAPI	GCANNNNNTGC	1 cut(s)	1505
BstAUI	TGTACA	1 cut(s)	1266
BstC8I	GCNNGC	8 cut(s)	96, 177, 513, 662, 924, 1307, 1363, 1393
BstDEI	CTNAG	4 cut(s)	235, 327, 447, 884
BstF5I	GGATG	3 cut(s)	904, 1041, 1263
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	7 cut(s)	70, 122, 589, 718, 825, 1193, 1289
BstMAI	GTCTC	3 cut(s)	130, 1374, 1423
BstMBI	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 754, 871, 1452, 1505
BstNI	CCWGG	4 cut(s)	348, 405, 666, 1284
BstSCI	CCNGG	5 cut(s)	346, 403, 664, 1282, 1441
BstSFI	CTRYAG	1 cut(s)	1497
BstSLI	GKGCMC	1 cut(s)	851
BstV1I	GCAGC	5 cut(s)	744, 1213, 1216, 1483, 1511
BstV2I	GAAGAC	1 cut(s)	1265
BstX2I	RGATCY	3 cut(s)	67, 586, 1190
BstYI	RGATCY	3 cut(s)	67, 586, 1190
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	5 cut(s)	402, 438, 664, 1455, 1467
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	1264
BtsCI	GGATG	3 cut(s)	904, 1041, 1263
BtsIMutI	CAGTG	6 cut(s)	12, 786, 825, 849, 1005, 1284
BveI	ACCTGC	3 cut(s)	268, 788, 1348
Cac8I	GCNNGC	8 cut(s)	96, 177, 513, 662, 924, 1307, 1363, 1393
CaiI	CAGNNNCTG	2 cut(s)	757, 1505
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	94, 1514
Cfr13I	GGNCC	4 cut(s)	401, 457, 1373, 1453
Csp6I	GTAC	7 cut(s)	198, 568, 674, 765, 1111, 1197, 1267
CspAI	ACCGGT	1 cut(s)	1514
CviAII	CATG	5 cut(s)	148, 389, 550, 1051, 1366
CviQI	GTAC	7 cut(s)	198, 568, 674, 765, 1111, 1197, 1267
DdeI	CTNAG	4 cut(s)	235, 327, 447, 884
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	7 cut(s)	69, 121, 588, 717, 824, 1192, 1288
DpnII	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	2 cut(s)	88, 1023
EarI	CTCTTC	2 cut(s)	88, 1023
Eco147I	AGGCCT	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	457, 1373
Eco57I	CTGAAG	2 cut(s)	734, 1233
EcoRII	CCWGG	4 cut(s)	346, 403, 664, 1282
EcoRV	GATATC	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	5 cut(s)	151, 392, 553, 1054, 1369
FaqI	GGGAC	2 cut(s)	470, 1070
FatI	CATG	5 cut(s)	147, 388, 549, 1050, 1365
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	5 cut(s)	758, 1227, 1230, 1497, 1500
FokI	GGATG	3 cut(s)	911, 1048, 1270
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	5 cut(s)	758, 1227, 1230, 1497, 1500
FspBI	CTAG	3 cut(s)	318, 1244, 1377
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	758, 1227, 1230, 1497, 1500
GsaI	CCCAGC	2 cut(s)	764, 1068
GsuI	CTGGAG	3 cut(s)	687, 810, 1113
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	5 cut(s)	402, 438, 664, 1455, 1467
HapII	CCGG	3 cut(s)	95, 1443, 1515
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	5 cut(s)	151, 392, 553, 1054, 1369
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	2 cut(s)	270, 367
HindII	GTYRAC	2 cut(s)	270, 367
HinfI	GANTC	4 cut(s)	231, 770, 816, 1179
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	3 cut(s)	95, 1443, 1515
HphI	GGTGA	6 cut(s)	43, 362, 914, 965, 1476, 1516
Hpy166II	GTNNAC	3 cut(s)	270, 367, 1267
Hpy188I	TCNGA	6 cut(s)	108, 166, 328, 381, 733, 885
Hpy188III	TCNNGA	5 cut(s)	283, 424, 647, 820, 1130
Hpy8I	GTNNAC	3 cut(s)	270, 367, 1267
HpyAV	CCTTC	5 cut(s)	37, 46, 644, 1007, 1457
HpyCH4III	ACNGT	7 cut(s)	16, 202, 521, 678, 1009, 1139, 1271
HpyCH4IV	ACGT	2 cut(s)	735, 1263
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 754, 871, 1452, 1505
HpyF3I	CTNAG	4 cut(s)	235, 327, 447, 884
HpySE526I	ACGT	2 cut(s)	735, 1263
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	5 cut(s)	151, 392, 553, 1054, 1369
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
LmnI	GCTCC	4 cut(s)	25, 166, 553, 791
Lsp1109I	GCAGC	5 cut(s)	744, 1213, 1216, 1483, 1511
LweI	GCATC	3 cut(s)	101, 820, 1511
MaeI	CTAG	3 cut(s)	318, 1244, 1377
MaeII	ACGT	2 cut(s)	735, 1263
MaeIII	GTNAC	4 cut(s)	350, 593, 1331, 1522
MalI	GATC	7 cut(s)	69, 121, 588, 717, 824, 1192, 1288
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
MboII	GAAGA	4 cut(s)	75, 412, 1040, 1265
MflI	RGATCY	3 cut(s)	67, 586, 1190
MhlI	GDGCHC	2 cut(s)	347, 851
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	4 cut(s)	135, 803, 945, 1170
MluNI	TGGCCA	1 cut(s)	438
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	1188
MmeI	TCCRAC	2 cut(s)	902, 979
MnlI	CCTC	7 cut(s)	531, 664, 885, 1026, 1131, 1207, 1312
Mox20I	TGGCCA	1 cut(s)	438
MroNI	GCCGGC	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	4 cut(s)	224, 366, 683, 1019
MslI	CAYNNNNRTG	1 cut(s)	1411
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	1496
MspCI	CTTAAG	1 cut(s)	1018
MspI	CCGG	3 cut(s)	95, 1443, 1515
MspR9I	CCNGG	5 cut(s)	348, 405, 666, 1284, 1443
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	4 cut(s)	348, 405, 666, 1284
MwoI	GCNNNNNNNGC	5 cut(s)	166, 754, 871, 1452, 1505
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	1443
NdeII	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	151, 392, 553, 1054, 1369
NlaIV	GGNNCC	4 cut(s)	153, 409, 458, 873
NmuCI	GTSAC	3 cut(s)	350, 1331, 1522
PaqCI	CACCTGC	2 cut(s)	788, 1348
PceI	AGGCCT	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	231, 770, 816
PflFI	GACNNNGTC	1 cut(s)	1178
PinAI	ACCGGT	1 cut(s)	1514
PkrI	GCNGC	5 cut(s)	759, 1228, 1231, 1498, 1501
PleI	GAGTC	1 cut(s)	1187
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	1187
Psp6I	CCWGG	4 cut(s)	346, 403, 664, 1282
PspFI	CCCAGC	2 cut(s)	760, 1064
PspGI	CCWGG	4 cut(s)	346, 403, 664, 1282
PspN4I	GGNNCC	4 cut(s)	153, 409, 458, 873
PspPI	GGNCC	4 cut(s)	401, 457, 1373, 1453
PsrI	GAACNNNNNNTAC	2 cut(s)	551, 583
PstI	CTGCAG	1 cut(s)	1501
PstNI	CAGNNNCTG	2 cut(s)	757, 1505
PsuI	RGATCY	3 cut(s)	67, 586, 1190
PsyI	GACNNNGTC	1 cut(s)	1178
PvuII	CAGCTG	1 cut(s)	1496
RsaI	GTAC	7 cut(s)	199, 569, 675, 766, 1112, 1198, 1268
RsaNI	GTAC	7 cut(s)	198, 568, 674, 765, 1111, 1197, 1267
RseI	CAYNNNNRTG	1 cut(s)	1411
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	224, 366, 683, 1019
SatI	GCNGC	5 cut(s)	758, 1227, 1230, 1497, 1500
Sau3AI	GATC	7 cut(s)	67, 119, 586, 715, 822, 1190, 1286
Sau96I	GGNCC	4 cut(s)	401, 457, 1373, 1453
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	1 cut(s)	1188
ScrFI	CCNGG	5 cut(s)	348, 405, 666, 1284, 1443
SduI	GDGCHC	2 cut(s)	347, 851
SfaNI	GCATC	3 cut(s)	101, 820, 1511
SfcI	CTRYAG	1 cut(s)	1497
SfoI	GGCGCC	1 cut(s)	153
SinI	GGWCC	2 cut(s)	457, 1373
SmiMI	CAYNNNNRTG	1 cut(s)	1411
SmlI	CTYRAG	5 cut(s)	535, 645, 866, 1018, 1115
SmoI	CTYRAG	5 cut(s)	535, 645, 866, 1018, 1115
Sse9I	AATT	4 cut(s)	135, 803, 945, 1170
SseBI	AGGCCT	1 cut(s)	664
SsiI	CCGC	1 cut(s)	169
SspDI	GGCGCC	1 cut(s)	151
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	3 cut(s)	318, 1244, 1377
StuI	AGGCCT	1 cut(s)	664
StyD4I	CCNGG	5 cut(s)	346, 403, 664, 1282, 1441
TaaI	ACNGT	7 cut(s)	16, 202, 521, 678, 1009, 1139, 1271
TaiI	ACGT	2 cut(s)	738, 1266
TaqI	TCGA	1 cut(s)	269
TaqII	GACCGA	3 cut(s)	112, 317, 474
TasI	AATT	4 cut(s)	135, 803, 945, 1170
TatI	WGTACW	3 cut(s)	567, 1196, 1266
TfiI	GAWTC	3 cut(s)	231, 770, 816
Tru1I	TTAA	4 cut(s)	224, 366, 683, 1019
Tru9I	TTAA	4 cut(s)	224, 366, 683, 1019
TscAI	CASTG	6 cut(s)	19, 793, 832, 856, 1012, 1284
TseFI	GTSAC	3 cut(s)	350, 1331, 1522
TseI	GCWGC	5 cut(s)	757, 1226, 1229, 1496, 1499
Tsp45I	GTSAC	3 cut(s)	350, 1331, 1522
TspDTI	ATGAA	3 cut(s)	28, 90, 1416
TspRI	CASTG	6 cut(s)	19, 793, 832, 856, 1012, 1284
Tth111I	GACNNNGTC	1 cut(s)	1178
Vha464I	CTTAAG	1 cut(s)	1018
VpaK11BI	GGWCC	2 cut(s)	457, 1373
XapI	RAATTY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 395
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	3 cut(s)	318, 1244, 1377
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.