Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

8923750 .. 8929119

Gene Structure 5370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGGCTTACTCCACTGTTGCTCCACCCTCCACCTTCTTCATCAACAACACCACCAAGAAGGATTTGGGTCTCTCTGCTTTCTCTTCCACGTCGCCGGCTTCATTTTCGAGATGCAAGAGATCGGTCTCCAAGAAAATCTGCTCCGTCATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCGCTACTGGCTCGATTTTGCAGGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAACGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGATTTCTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTGCTGCTAGGTACAGATTCTCACACCTGCACCGCTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGAATACTGATGCTGGTTTCGTATTGGGCACTGGGAAGCTTTTGCTCAAGGTGCCTCCAACTCTGAGATTTGTGCTGGATGGTGAAATGCCTGACTATTTGCTTGCCAAAGACTTGATTTTACAAATTATTGGTGAAATCTCTGTTGCTGGTGCAACATATAAAGCTATGGAGTTTGTTGGCAGCACTGTTGAAAGCTTAAGTATGGAAGAGAGGATGACATTATGCAACATGGTTGTTGAAGCTGGGGGTAAAAACGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGGATAAAACGTCTGTACCCTATGAACCTGTGTACAGTGATGATACAGCAAGATTTCTTACTGAGTACAGATTTGATATCTCAAAACTGGAGCCATTGGTGGCAAAGCCTCATTCTCCTGATAACCGTGCTTTAGCAAGAGAATGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTAGCTTCGGGAAAAAAGGTCAAAGTACCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGATGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCACAGATATTTGAAGAAGCTGGTTGTGACACGCCTGCAAGTCCCAGTTGTGGTGCTTGCTTGGGTGGTCCTAAGGACACGTATGCTCGCTTGAATGAACCACAGGTATGTGTGTCTACTACGAACAGGAACTTCCCAGGCAGAATGGGGCACAAGGAAGGACAGATATATCTTGCTTCACCATATACAGCTGCAGCATCTGCTTTGACCGGTTATGTTACCGACCCAAGAGAGTTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

514

Amino Acids

55.92

Weight (kDa)

7.01

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	94 - 504	1.9e-81	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	629
Acc36I	ACCTGC	3 cut(s)	190, 629, 1240
AccB1I	GGYRCC	2 cut(s)	151, 712
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	1415
AciI	CCGC	3 cut(s)	169, 180, 627
AclWI	GGATC	3 cut(s)	516, 1144, 1288
AcyI	GRCGYC	1 cut(s)	152
AfiI	CCNNNNNNNGG	4 cut(s)	448, 1277, 1283, 1349
AflII	CTTAAG	1 cut(s)	859
AflIII	ACRYGT	2 cut(s)	315, 1377
AgeI	ACCGGT	1 cut(s)	1508
AgsI	TTSAA	5 cut(s)	346, 854, 902, 1313, 1393
AjiI	CACGTC	2 cut(s)	90, 316
AjnI	CCWGG	5 cut(s)	268, 325, 586, 1276, 1435
AluBI	AGCT	8 cut(s)	635, 700, 827, 858, 905, 1193, 1319, 1490
AluI	AGCT	8 cut(s)	635, 700, 827, 858, 905, 1193, 1319, 1490
Alw26I	GTCTC	2 cut(s)	74, 130
AlwI	GGATC	3 cut(s)	516, 1144, 1288
AlwNI	CAGNNNCTG	1 cut(s)	1499
AoxI	GGCC	2 cut(s)	322, 584
ApeKI	GCWGC	6 cut(s)	598, 843, 1172, 1175, 1490, 1493
AsiGI	ACCGGT	1 cut(s)	1508
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	323, 1367
AsuHPI	GGTGA	4 cut(s)	284, 755, 806, 1470
AvaII	GGWCC	1 cut(s)	1367
AxyI	CCTNAGG	1 cut(s)	1371
BaeGI	GKGCMC	2 cut(s)	692, 1452
BaeI	ACNNNNGTAYC	2 cut(s)	957, 990
BanI	GGYRCC	2 cut(s)	151, 712
BanII	GRGCYC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	1259
BbvI	GCAGC	6 cut(s)	585, 855, 1159, 1162, 1477, 1505
BccI	CCATC	2 cut(s)	734, 1246
BciT130I	CCWGG	5 cut(s)	270, 327, 588, 1278, 1437
BcoDI	GTCTC	2 cut(s)	74, 130
BfaI	CTAG	3 cut(s)	240, 602, 1190
BfmI	CTRYAG	1 cut(s)	1491
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	859
BfuAI	ACCTGC	3 cut(s)	190, 629, 1240
BisI	GCNGC	7 cut(s)	180, 599, 844, 1173, 1176, 1491, 1494
BlsI	GCNGC	7 cut(s)	181, 600, 845, 1174, 1177, 1492, 1495
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	5 cut(s)	270, 327, 588, 1278, 1437
Bme18I	GGWCC	1 cut(s)	1367
BmgBI	CACGTC	2 cut(s)	90, 316
BmgT120I	GGNCC	2 cut(s)	323, 1367
BmiI	GGNNCC	3 cut(s)	153, 714, 1050
BmrFI	CCNGG	5 cut(s)	270, 327, 588, 1278, 1437
BmrI	ACTGGG	2 cut(s)	702, 1338
BmsI	GCATC	3 cut(s)	101, 661, 1505
BmuI	ACTGGG	2 cut(s)	702, 1338
BpiI	GAAGAC	1 cut(s)	1259
BpmI	CTGGAG	3 cut(s)	609, 651, 1067
BpuEI	CTTGAG	4 cut(s)	478, 552, 692, 977
BsaAI	YACGTR	1 cut(s)	1380
BsaBI	GATNNNNATC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	2 cut(s)	74, 130
BsaJI	CCNNGG	3 cut(s)	268, 325, 1435
BsaWI	WCCGGW	1 cut(s)	1508
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	448, 1277, 1283, 1349
Bse118I	RCCGGY	2 cut(s)	94, 1508
Bse1I	ACTGG	7 cut(s)	190, 658, 697, 1050, 1150, 1271, 1344
Bse21I	CCTNAGG	1 cut(s)	1371
Bse3DI	GCAATG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	5 cut(s)	270, 327, 588, 1278, 1437
BseDI	CCNNGG	3 cut(s)	268, 325, 1435
BseGI	GGATG	4 cut(s)	745, 882, 1257, 1261
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	4 cut(s)	448, 1277, 1283, 1349
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	3 cut(s)	240, 716, 1011
BseNI	ACTGG	7 cut(s)	190, 658, 697, 1050, 1150, 1271, 1344
BseSI	GKGCMC	2 cut(s)	692, 1452
BseXI	GCAGC	6 cut(s)	585, 855, 1159, 1162, 1477, 1505
BseYI	CCCAGC	1 cut(s)	905
BsgI	GTGCAG	2 cut(s)	454, 607
BshFI	GGCC	2 cut(s)	324, 586
BshNI	GGYRCC	2 cut(s)	151, 712
BshTI	ACCGGT	1 cut(s)	1508
BsiSI	CCGG	2 cut(s)	95, 1509
BslFI	GGGAC	3 cut(s)	392, 911, 1326
BslI	CCNNNNNNNGG	4 cut(s)	448, 1277, 1283, 1349
BsmAI	GTCTC	2 cut(s)	74, 130
BsmFI	GGGAC	3 cut(s)	392, 911, 1326
BsmI	GAATGC	1 cut(s)	1106
BsnI	GGCC	2 cut(s)	324, 586
Bso31I	GGTCTC	2 cut(s)	74, 130
Bsp1286I	GDGCHC	3 cut(s)	269, 692, 1452
Bsp1407I	TGTACA	2 cut(s)	990, 1260
Bsp143I	GATC	4 cut(s)	119, 508, 1136, 1280
BspACI	CCGC	3 cut(s)	169, 180, 627
BspANI	GGCC	2 cut(s)	324, 586
BspCNI	CTCAG	3 cut(s)	241, 717, 1012
BspLI	GGNNCC	3 cut(s)	153, 714, 1050
BspMAI	CTGCAG	1 cut(s)	1495
BspMI	ACCTGC	3 cut(s)	190, 629, 1240
BspPI	GGATC	3 cut(s)	516, 1144, 1288
BspT107I	GGYRCC	2 cut(s)	151, 712
BspTI	CTTAAG	1 cut(s)	859
BspTNI	GGTCTC	2 cut(s)	74, 130
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	577
BsrFI	RCCGGY	2 cut(s)	94, 1508
BsrGI	TGTACA	2 cut(s)	990, 1260
BsrI	ACTGG	7 cut(s)	190, 658, 697, 1050, 1150, 1271, 1344
BssAI	RCCGGY	2 cut(s)	94, 1508
BssECI	CCNNGG	3 cut(s)	268, 325, 1435
BssMI	GATC	4 cut(s)	119, 508, 1136, 1280
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	5 cut(s)	270, 327, 588, 1278, 1437
Bst4CI	ACNGT	7 cut(s)	16, 443, 850, 920, 995, 1085, 1265
Bst6I	CTCTTC	2 cut(s)	88, 864
BstACI	GRCGYC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	859
BstAPI	GCANNNNNTGC	2 cut(s)	1296, 1499
BstAUI	TGTACA	2 cut(s)	990, 1260
BstBAI	YACGTR	1 cut(s)	1380
BstC8I	GCNNGC	8 cut(s)	96, 177, 435, 584, 765, 1335, 1357, 1387
BstDEI	CTNAG	4 cut(s)	249, 725, 1020, 1371
BstF5I	GGATG	4 cut(s)	745, 882, 1257, 1261
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	122, 511, 1139, 1283
BstMAI	GTCTC	2 cut(s)	74, 130
BstMBI	GATC	4 cut(s)	119, 508, 1136, 1280
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 712, 1296, 1499
BstNI	CCWGG	5 cut(s)	270, 327, 588, 1278, 1437
BstSCI	CCNGG	5 cut(s)	268, 325, 586, 1276, 1435
BstSFI	CTRYAG	1 cut(s)	1491
BstSLI	GKGCMC	2 cut(s)	692, 1452
BstV1I	GCAGC	6 cut(s)	585, 855, 1159, 1162, 1477, 1505
BstV2I	GAAGAC	1 cut(s)	1259
BstX2I	RGATCY	2 cut(s)	508, 1136
BstYI	RGATCY	2 cut(s)	508, 1136
Bsu36I	CCTNAGG	1 cut(s)	1371
BsuRI	GGCC	2 cut(s)	324, 586
BtrI	CACGTC	2 cut(s)	90, 316
BtsCI	GGATG	4 cut(s)	745, 882, 1257, 1261
BtsIMutI	CAGTG	5 cut(s)	12, 690, 846, 1000, 1278
BveI	ACCTGC	3 cut(s)	190, 629, 1240
Cac8I	GCNNGC	8 cut(s)	96, 177, 435, 584, 765, 1335, 1357, 1387
CaiI	CAGNNNCTG	1 cut(s)	1499
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	94, 1508
Cfr13I	GGNCC	2 cut(s)	323, 1367
CspAI	ACCGGT	1 cut(s)	1508
CspCI	CAANNNNNGTGG	2 cut(s)	1207, 1242
CviAII	CATG	4 cut(s)	148, 311, 554, 892
DdeI	CTNAG	4 cut(s)	249, 725, 1020, 1371
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	4 cut(s)	121, 510, 1138, 1282
DpnII	GATC	4 cut(s)	119, 508, 1136, 1280
Eam1104I	CTCTTC	2 cut(s)	88, 864
EarI	CTCTTC	2 cut(s)	88, 864
Eco147I	AGGCCT	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	269
Eco31I	GGTCTC	2 cut(s)	74, 130
Eco32I	GATATC	3 cut(s)	454, 502, 1036
Eco47I	GGWCC	1 cut(s)	1367
Eco81I	CCTNAGG	1 cut(s)	1371
EcoRII	CCWGG	5 cut(s)	268, 325, 586, 1276, 1435
EcoRV	GATATC	3 cut(s)	454, 502, 1036
EcoT38I	GRGCYC	1 cut(s)	269
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	4 cut(s)	151, 314, 557, 895
FaqI	GGGAC	3 cut(s)	392, 911, 1326
FatI	CATG	4 cut(s)	147, 310, 553, 891
FblI	GTMKAC	1 cut(s)	1415
Fnu4HI	GCNGC	7 cut(s)	180, 599, 844, 1173, 1176, 1491, 1494
FokI	GGATG	4 cut(s)	752, 889, 1264, 1268
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	7 cut(s)	180, 599, 844, 1173, 1176, 1491, 1494
FspBI	CTAG	3 cut(s)	240, 602, 1190
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	7 cut(s)	180, 599, 844, 1173, 1176, 1491, 1494
GsaI	CCCAGC	1 cut(s)	909
GsuI	CTGGAG	3 cut(s)	609, 651, 1067
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	324, 586
HapII	CCGG	2 cut(s)	95, 1509
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	151, 314, 557, 895
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	2 cut(s)	698, 856
HinfI	GANTC	4 cut(s)	339, 611, 657, 1125
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	95, 1509
HphI	GGTGA	4 cut(s)	284, 755, 806, 1470
Hpy166II	GTNNAC	4 cut(s)	289, 991, 1261, 1416
Hpy188I	TCNGA	3 cut(s)	166, 250, 726
Hpy188III	TCNNGA	8 cut(s)	108, 205, 346, 457, 569, 661, 1076, 1197
Hpy8I	GTNNAC	4 cut(s)	289, 991, 1261, 1416
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	43, 52, 566, 1451
HpyCH4III	ACNGT	7 cut(s)	16, 443, 850, 920, 995, 1085, 1265
HpyCH4IV	ACGT	4 cut(s)	89, 315, 968, 1379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 712, 1296, 1499
HpyF3I	CTNAG	4 cut(s)	249, 725, 1020, 1371
HpySE526I	ACGT	4 cut(s)	89, 315, 968, 1379
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	4 cut(s)	151, 314, 557, 895
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	119, 508, 1136, 1280
LmnI	GCTCC	5 cut(s)	25, 146, 166, 632, 1048
Lsp1109I	GCAGC	6 cut(s)	585, 855, 1159, 1162, 1477, 1505
LweI	GCATC	3 cut(s)	101, 661, 1505
MaeI	CTAG	3 cut(s)	240, 602, 1190
MaeII	ACGT	4 cut(s)	89, 315, 968, 1379
MaeIII	GTNAC	4 cut(s)	272, 515, 1325, 1516
MalI	GATC	4 cut(s)	121, 510, 1138, 1282
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	4 cut(s)	119, 508, 1136, 1280
MboII	GAAGA	7 cut(s)	28, 75, 241, 334, 881, 1259, 1325
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	2 cut(s)	508, 1136
MhlI	GDGCHC	3 cut(s)	269, 692, 1452
MluCI	AATT	4 cut(s)	260, 644, 786, 1116
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	1134
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	8 cut(s)	37, 453, 586, 726, 867, 952, 1077, 1153
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	3 cut(s)	288, 522, 860
MslI	CAYNNNNRTG	1 cut(s)	1405
MspA1I	CMGCKG	2 cut(s)	629, 1490
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	2 cut(s)	95, 1509
MspR9I	CCNGG	5 cut(s)	270, 327, 588, 1278, 1437
MunI	CAATTG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	1106
MvaI	CCWGG	5 cut(s)	270, 327, 588, 1278, 1437
MwoI	GCNNNNNNNGC	4 cut(s)	166, 712, 1296, 1499
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	152
NdeII	GATC	4 cut(s)	119, 508, 1136, 1280
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	151, 314, 557, 895
NlaIV	GGNNCC	3 cut(s)	153, 714, 1050
NmuCI	GTSAC	2 cut(s)	272, 1325
PaqCI	CACCTGC	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	586
PctI	GAATGC	1 cut(s)	1106
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	339, 611, 657
PflFI	GACNNNGTC	1 cut(s)	1124
PinAI	ACCGGT	1 cut(s)	1508
PkrI	GCNGC	7 cut(s)	181, 600, 845, 1174, 1177, 1492, 1495
PleI	GAGTC	1 cut(s)	1133
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	1133
Ppu21I	YACGTR	1 cut(s)	1380
Psp6I	CCWGG	5 cut(s)	268, 325, 586, 1276, 1435
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	5 cut(s)	268, 325, 586, 1276, 1435
PspN4I	GGNNCC	3 cut(s)	153, 714, 1050
PspPI	GGNCC	2 cut(s)	323, 1367
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PstI	CTGCAG	1 cut(s)	1495
PstNI	CAGNNNCTG	1 cut(s)	1499
PsuI	RGATCY	2 cut(s)	508, 1136
PsyI	GACNNNGTC	1 cut(s)	1124
PvuII	CAGCTG	1 cut(s)	1490
RseI	CAYNNNNRTG	1 cut(s)	1405
SaqAI	TTAA	3 cut(s)	288, 522, 860
SatI	GCNGC	7 cut(s)	180, 599, 844, 1173, 1176, 1491, 1494
Sau3AI	GATC	4 cut(s)	119, 508, 1136, 1280
Sau96I	GGNCC	2 cut(s)	323, 1367
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	1134
ScrFI	CCNGG	5 cut(s)	270, 327, 588, 1278, 1437
SduI	GDGCHC	3 cut(s)	269, 692, 1452
SfaNI	GCATC	3 cut(s)	101, 661, 1505
SfcI	CTRYAG	1 cut(s)	1491
SfoI	GGCGCC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	1367
SmiMI	CAYNNNNRTG	1 cut(s)	1405
SmlI	CTYRAG	5 cut(s)	457, 567, 707, 859, 956
SmoI	CTYRAG	5 cut(s)	457, 567, 707, 859, 956
Sse9I	AATT	4 cut(s)	260, 644, 786, 1116
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	3 cut(s)	169, 180, 627
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	3 cut(s)	240, 602, 1190
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	5 cut(s)	268, 325, 586, 1276, 1435
TaaI	ACNGT	7 cut(s)	16, 443, 850, 920, 995, 1085, 1265
TaiI	ACGT	4 cut(s)	92, 318, 971, 1382
TaqI	TCGA	2 cut(s)	107, 191
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	4 cut(s)	260, 644, 786, 1116
TatI	WGTACW	5 cut(s)	489, 990, 1023, 1142, 1260
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	3 cut(s)	339, 611, 657
Tru1I	TTAA	3 cut(s)	288, 522, 860
Tru9I	TTAA	3 cut(s)	288, 522, 860
TscAI	CASTG	5 cut(s)	19, 697, 853, 1000, 1278
TseFI	GTSAC	2 cut(s)	272, 1325
TseI	GCWGC	6 cut(s)	598, 843, 1172, 1175, 1490, 1493
Tsp45I	GTSAC	2 cut(s)	272, 1325
TspDTI	ATGAA	5 cut(s)	28, 90, 321, 996, 1410
TspGWI	ACGGA	2 cut(s)	133, 239
TspRI	CASTG	5 cut(s)	19, 697, 853, 1000, 1278
Tth111I	GACNNNGTC	1 cut(s)	1124
Vha464I	CTTAAG	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	1367
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 317
XmiI	GTMKAC	1 cut(s)	1415
XspI	CTAG	3 cut(s)	240, 602, 1190
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.