Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

19531724 .. 19534076

Gene Structure 2353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTGACGGAGTCGACCATAATGCCAAGAAGCACCGCGCGACGGCGTCGGAGCCTCTTCGATCATGGAGCTCAAAGCCTAGCTTTACCAGTCTCAAGAAGATTCCAAGAAGTACAAAGACCTCGCAGACCCCGACGCCGAGTTCCACCGCGCTAAGTAGAAGATCACCGCTCACGATGTCTTCTCTGCCAAGAACTCCGGCATCGACGCCTGGGCCCACAGCTGGGGGTAAAAATGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGGATAAAACGTCTGTACCCTATGAACCTGTGTATAGTGATGATACAGCTAGATTTCTTACAGAGTACAGATTTGATATCTCAAAACTGGAGCCATTGGTGGCAAAGCCTCATTCTCCAGATAACCGTGCTTTAGCAAGAGAGTGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGGAAAAAATGTCAAAGTGCCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCACTTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGATCCACTGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

240

Amino Acids

26.02

Weight (kDa)

9.15

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	140 - 227	2.2e-07	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	646
Acc36I	ACCTGC	2 cut(s)	544, 646
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	3 cut(s)	39, 41, 152
AciI	CCGC	3 cut(s)	37, 150, 170
AclWI	GGATC	3 cut(s)	463, 592, 703
AcyI	GRCGYC	3 cut(s)	47, 137, 209
AfaI	GTAC	8 cut(s)	115, 272, 294, 344, 463, 534, 566, 719
AfiI	CCNNNNNNNGG	6 cut(s)	43, 224, 225, 581, 587, 653
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	1 cut(s)	697
AjiI	CACGTC	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	211, 580
AloI	GAACNNNNNNTCC	1 cut(s)	693
AluBI	AGCT	5 cut(s)	72, 84, 224, 326, 623
AluI	AGCT	5 cut(s)	72, 84, 224, 326, 623
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	98, 672
AlwI	GGATC	3 cut(s)	463, 592, 703
AoxI	GGCC	1 cut(s)	215
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	491, 494
AspLEI	GCGC	2 cut(s)	41, 154
AspS9I	GGNCC	3 cut(s)	215, 216, 671
AsuHPI	GGTGA	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	671
BaeGI	GKGCMC	2 cut(s)	219, 522
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanII	GRGCYC	2 cut(s)	74, 219
BbsI	GAAGAC	2 cut(s)	174, 563
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	478, 481
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	213, 582
BcoDI	GTCTC	2 cut(s)	98, 672
BfaI	CTAG	3 cut(s)	81, 327, 675
BfuAI	ACCTGC	2 cut(s)	544, 646
BisI	GCNGC	2 cut(s)	492, 495
BlsI	GCNGC	2 cut(s)	493, 496
Bme1390I	CCNGG	2 cut(s)	213, 582
Bme18I	GGWCC	1 cut(s)	671
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	215, 216, 671
BmiI	GGNNCC	3 cut(s)	54, 217, 369
BmrFI	CCNGG	2 cut(s)	213, 582
BmsI	GCATC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	174, 563
BpmI	CTGGAG	2 cut(s)	378, 386
BpuEI	CTTGAG	2 cut(s)	80, 296
BsaHI	GRCGYC	3 cut(s)	47, 137, 209
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 224, 225, 581, 587, 653
Bse1I	ACTGG	5 cut(s)	90, 369, 469, 575, 719
BseBI	CCWGG	2 cut(s)	213, 582
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	6 cut(s)	43, 224, 225, 581, 587, 653
BseNI	ACTGG	5 cut(s)	90, 369, 469, 575, 719
BseSI	GKGCMC	2 cut(s)	219, 522
BseXI	GCAGC	2 cut(s)	478, 481
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	3 cut(s)	39, 41, 152
BshFI	GGCC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	230, 630
BslI	CCNNNNNNNGG	6 cut(s)	43, 224, 225, 581, 587, 653
BsmAI	GTCTC	2 cut(s)	98, 672
BsmFI	GGGAC	2 cut(s)	230, 630
BsnI	GGCC	1 cut(s)	217
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	74, 219, 522
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	62, 164, 455, 584, 708
BspACI	CCGC	3 cut(s)	37, 150, 170
BspANI	GGCC	1 cut(s)	217
BspFNI	CGCG	3 cut(s)	39, 41, 152
BspLI	GGNNCC	3 cut(s)	54, 217, 369
BspMI	ACCTGC	2 cut(s)	544, 646
BspPI	GGATC	3 cut(s)	463, 592, 703
BsrBI	CCGCTC	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	5 cut(s)	90, 369, 469, 575, 719
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	5 cut(s)	62, 164, 455, 584, 708
BssNI	GRCGYC	3 cut(s)	47, 137, 209
Bst2UI	CCWGG	2 cut(s)	213, 582
Bst4CI	ACNGT	2 cut(s)	404, 569
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	3 cut(s)	47, 137, 209
BstAPI	GCANNNNNTGC	1 cut(s)	600
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	3 cut(s)	605, 661, 691
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	3 cut(s)	39, 41, 152
BstHHI	GCGC	2 cut(s)	41, 154
BstKTI	GATC	5 cut(s)	65, 167, 458, 587, 711
BstMAI	GTCTC	2 cut(s)	98, 672
BstMBI	GATC	5 cut(s)	62, 164, 455, 584, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstNI	CCWGG	2 cut(s)	213, 582
BstSCI	CCNGG	2 cut(s)	211, 580
BstSLI	GKGCMC	2 cut(s)	219, 522
BstUI	CGCG	3 cut(s)	39, 41, 152
BstV1I	GCAGC	2 cut(s)	478, 481
BstV2I	GAAGAC	2 cut(s)	174, 563
BstX2I	RGATCY	2 cut(s)	455, 708
BstYI	RGATCY	2 cut(s)	455, 708
BsuRI	GGCC	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	582, 712
BveI	ACCTGC	2 cut(s)	544, 646
Cac8I	GCNNGC	3 cut(s)	605, 661, 691
CfoI	GCGC	2 cut(s)	41, 154
Cfr13I	GGNCC	3 cut(s)	215, 216, 671
CseI	GACGC	3 cut(s)	36, 145, 217
Csp6I	GTAC	8 cut(s)	114, 271, 293, 343, 462, 533, 565, 718
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	2 cut(s)	66, 664
CviQI	GTAC	8 cut(s)	114, 271, 293, 343, 462, 533, 565, 718
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	5 cut(s)	64, 166, 457, 586, 710
DpnII	GATC	5 cut(s)	62, 164, 455, 584, 708
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	74, 219
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	671
Eco53kI	GAGCTC	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	211, 580
EcoRV	GATATC	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	74, 219
FaeI	CATG	2 cut(s)	69, 667
FaiI	YATR	9 cut(s)	21, 67, 265, 300, 312, 450, 488, 665, 687
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 634, 666
FaqI	GGGAC	2 cut(s)	230, 630
FatI	CATG	2 cut(s)	65, 663
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	492, 495
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	2 cut(s)	74, 219
Fsp4HI	GCNGC	2 cut(s)	492, 495
FspBI	CTAG	3 cut(s)	81, 327, 675
GlaI	GCGC	2 cut(s)	40, 153
GluI	GCNGC	2 cut(s)	492, 495
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	378, 386
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	3 cut(s)	36, 145, 217
HhaI	GCGC	2 cut(s)	41, 154
Hin1I	GRCGYC	3 cut(s)	47, 137, 209
Hin1II	CATG	2 cut(s)	69, 667
Hin6I	GCGC	2 cut(s)	39, 152
HinP1I	GCGC	2 cut(s)	39, 152
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	3 cut(s)	12, 103, 444
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	16, 565
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	97, 175, 395
Hpy8I	GTNNAC	2 cut(s)	16, 565
Hpy99I	CGWCG	4 cut(s)	46, 52, 139, 211
HpyCH4III	ACNGT	2 cut(s)	404, 569
HpyCH4IV	ACGT	2 cut(s)	287, 561
HpyCH4V	TGCA	3 cut(s)	423, 641, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	287, 561
Hsp92I	GRCGYC	3 cut(s)	47, 137, 209
Hsp92II	CATG	2 cut(s)	69, 667
HspAI	GCGC	2 cut(s)	39, 152
Kzo9I	GATC	5 cut(s)	62, 164, 455, 584, 708
LmnI	GCTCC	3 cut(s)	52, 69, 367
Lsp1109I	GCAGC	2 cut(s)	478, 481
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	3 cut(s)	81, 327, 675
MaeII	ACGT	2 cut(s)	287, 561
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	5 cut(s)	64, 166, 457, 586, 710
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	5 cut(s)	62, 164, 455, 584, 708
MboII	GAAGA	5 cut(s)	50, 112, 174, 174, 563
MflI	RGATCY	2 cut(s)	455, 708
MhlI	GDGCHC	3 cut(s)	74, 219, 522
MluCI	AATT	1 cut(s)	435
MlyI	GAGTC	2 cut(s)	21, 453
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	66, 133, 271, 396, 472, 610
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	213, 582
MvaI	CCWGG	2 cut(s)	213, 582
MvnI	CGCG	3 cut(s)	39, 41, 152
MwoI	GCNNNNNNNGC	1 cut(s)	600
NdeII	GATC	5 cut(s)	62, 164, 455, 584, 708
NlaIII	CATG	2 cut(s)	69, 667
NlaIV	GGNNCC	3 cut(s)	54, 217, 369
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	629
PaqCI	CACCTGC	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	3 cut(s)	11, 46, 443
PkrI	GCNGC	2 cut(s)	493, 496
PleI	GAGTC	2 cut(s)	20, 452
PpsI	GAGTC	2 cut(s)	20, 452
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	211, 580
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	211, 580
PspN4I	GGNNCC	3 cut(s)	54, 217, 369
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	215, 216, 671
PsuI	RGATCY	2 cut(s)	455, 708
PsyI	GACNNNGTC	3 cut(s)	11, 46, 443
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	8 cut(s)	115, 272, 294, 344, 463, 534, 566, 719
RsaNI	GTAC	8 cut(s)	114, 271, 293, 343, 462, 533, 565, 718
SacI	GAGCTC	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	14
SatI	GCNGC	2 cut(s)	492, 495
Sau3AI	GATC	5 cut(s)	62, 164, 455, 584, 708
Sau96I	GGNCC	3 cut(s)	215, 216, 671
SchI	GAGTC	2 cut(s)	21, 453
ScrFI	CCNGG	2 cut(s)	213, 582
SduI	GDGCHC	3 cut(s)	74, 219, 522
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	95, 275
SmoI	CTYRAG	2 cut(s)	95, 275
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	3 cut(s)	37, 150, 170
SspMI	CTAG	3 cut(s)	81, 327, 675
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	211, 580
TaaI	ACNGT	2 cut(s)	404, 569
TaiI	ACGT	2 cut(s)	290, 564
TaqI	TCGA	3 cut(s)	15, 61, 206
TasI	AATT	1 cut(s)	435
TatI	WGTACW	4 cut(s)	113, 342, 461, 564
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	2 cut(s)	582, 719
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	2 cut(s)	491, 494
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	2 cut(s)	315, 714
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	582, 719
Tth111I	GACNNNGTC	3 cut(s)	11, 46, 443
VpaK11BI	GGWCC	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	81, 327, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.