Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

5656734 .. 5657293

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCTACTCTACTGTAGCTCCACCCTCCACCTCCATCAACAACACCACCAAGGACTTGGATGTCTCTGCGTTCTCTTCAACTTGTCCGGCTTCATTTCAGCTATGCAAGAGATCAGTCTCCAAGAAAATCTGCTCCGTCATGTTGCCATCAGAGCGGAAGCCAGCCACTACTGGCTTGGTGAAGACCGGAATGACGATGGCGGAGAAGATATTGGCAAGGGCTTCAGAGAGAACCCATTTGAGCCCGGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGATGTGTGTGGCCCTGGTTCCTTTGGAATCTTCAAGAAAGAGTTTGGCCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

116

Amino Acids

12.37

Weight (kDa)

9.02

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	2 cut(s)	157, 203
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	81, 325
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	20, 103
AluI	AGCT	2 cut(s)	20, 103
Alw26I	GTCTC	2 cut(s)	70, 124
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	3 cut(s)	3, 301, 337
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	248, 249
AsuHPI	GGTGA	2 cut(s)	193, 263
AvaI	CYCGRG	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	191
BccI	CCATC	3 cut(s)	44, 157, 193
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	2 cut(s)	248, 249
BcoDI	GTCTC	2 cut(s)	70, 124
BfmI	CTRYAG	1 cut(s)	15
Bme1390I	CCNGG	3 cut(s)	248, 249, 306
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	3 cut(s)	248, 249, 306
BpiI	GAAGAC	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	248, 249
BsaJI	CCNNGG	3 cut(s)	51, 247, 304
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	51, 247, 304
BseGI	GGATG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	5, 303, 339
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	89, 189, 248
BsmAI	GTCTC	2 cut(s)	70, 124
BsnI	GGCC	3 cut(s)	5, 303, 339
BsoBI	CYCGRG	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	113
BspACI	CCGC	2 cut(s)	157, 203
BspANI	GGCC	3 cut(s)	5, 303, 339
BspLI	GGNNCC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	51, 247, 304
BssMI	GATC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	116
BstMAI	GTCTC	2 cut(s)	70, 124
BstMBI	GATC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	3 cut(s)	246, 247, 304
BstSFI	CTRYAG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	5, 303, 339
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	302
Cfr9I	CCCGGG	1 cut(s)	247
CviAII	CATG	2 cut(s)	142, 290
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	145, 293
FaiI	YATR	3 cut(s)	106, 143, 291
FatI	CATG	2 cut(s)	141, 289
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	5, 303, 339
HapII	CCGG	3 cut(s)	89, 189, 248
Hin1II	CATG	2 cut(s)	145, 293
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	318
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	89, 189, 248
HphI	GGTGA	2 cut(s)	193, 263
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	154, 229
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	145, 293
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	25, 140
LpnPI	CCDG	7 cut(s)	102, 159, 177, 202, 261, 291, 318
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	115
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	1 cut(s)	113
MboII	GAAGA	4 cut(s)	69, 196, 220, 313
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	339
MnlI	CCTC	2 cut(s)	37, 43
Mox20I	TGGCCA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	3 cut(s)	89, 189, 248
MspR9I	CCNGG	3 cut(s)	248, 249, 306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	2 cut(s)	248, 249
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	145, 293
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	113
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	248, 249, 306
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	3 cut(s)	22, 35, 105
SfcI	CTRYAG	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	157, 203
StyD4I	CCNGG	3 cut(s)	246, 247, 304
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	127
TspMI	CCCGGG	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	3 cut(s)	55, 175, 296
XmaI	CCCGGG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.