RLG00000009126

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000647
Physical Location & Seq
Forward (+)
47143667 .. 47144599
933 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009126

Sequence Viewer

Length: 399 bp
ATGAGAGCTCTACCTCATGTGATTTGCATCACCGGTACGCCTTTAATAACAGTTTCCATTAGTTTATTTGTTCCAATATCTAACCCTGCAAGCATCTGCCGAGAGCTGCCGACATCTGCCGAGAAGCCCAGCGAGCACCTGCCGAGAGCTGCCGAGCATCTGCCGACCACCTGCCGAGAGCTGCCGAGCACCTGCCGACACCTGCCGACACCTGCCGAGCACCTGCCGACACCTGCCGAGCACCTGCAGACACCTGCCGATAGCTGCCGACACCTGCCGAGCACCTGCCTAGACCTGCCGAGCACCTGCCGACACCTGCCGAGCAGCTGCCTAGACCTGCCGAGCACCTGCCGACACCTGCCGGCACCTGCCGACACCTGCCGAGGCCCCTGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.27

Weight (kDa)

7.08

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AfaI GTAC 1 cut(s) 37
AgeI ACCGGT 1 cut(s) 32
AluBI AGCT 6 cut(s) 8, 106, 149, 181, 264, 327
AluI AGCT 6 cut(s) 8, 106, 149, 181, 264, 327
Alw21I GWGCWC 8 cut(s) 10, 138, 191, 222, 243, 284, 305, 347
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 6 cut(s) 106, 149, 181, 264, 324, 327
AsiGI ACCGGT 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 10
Bbv12I GWGCWC 8 cut(s) 10, 138, 191, 222, 243, 284, 305, 347
BbvI GCAGC 6 cut(s) 93, 136, 168, 251, 314, 336
BcgI CGANNNNNNTGC 1 cut(s) 372
BfaI CTAG 2 cut(s) 290, 332
BfmI CTRYAG 1 cut(s) 245
BisI GCNGC 6 cut(s) 107, 150, 182, 265, 325, 328
BlsI GCNGC 6 cut(s) 108, 151, 183, 266, 326, 329
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 2 cut(s) 366, 388
BmsI GCATC 3 cut(s) 36, 102, 166
BsaBI GATNNNNATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 32
Bse118I RCCGGY 2 cut(s) 32, 361
Bse8I GATNNNNATC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 26
BseXI GCAGC 6 cut(s) 93, 136, 168, 251, 314, 336
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 364
BshTI ACCGGT 1 cut(s) 32
BsiHKAI GWGCWC 8 cut(s) 10, 138, 191, 222, 243, 284, 305, 347
BsiSI CCGG 2 cut(s) 33, 362
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 8 cut(s) 10, 138, 191, 222, 243, 284, 305, 347
BspANI GGCC 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 366, 388
BspMAI CTGCAG 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 364
BsrFI RCCGGY 2 cut(s) 32, 361
BssAI RCCGGY 2 cut(s) 32, 361
BssECI CCNNGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 91, 134, 363
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 6 cut(s) 93, 136, 168, 251, 314, 336
BsuRI GGCC 1 cut(s) 387
Cac8I GCNNGC 3 cut(s) 91, 134, 363
Cfr10I RCCGGY 2 cut(s) 32, 361
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 1 cut(s) 17
CviJI RGCY 8 cut(s) 8, 106, 127, 149, 181, 264, 327, 387
CviKI_1 RGCY 8 cut(s) 8, 106, 127, 149, 181, 264, 327, 387
CviQI GTAC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 10
FaeI CATG 1 cut(s) 20
FaiI YATR 1 cut(s) 18
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 6 cut(s) 107, 150, 182, 265, 325, 328
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 6 cut(s) 107, 150, 182, 265, 325, 328
FspBI CTAG 2 cut(s) 290, 332
GluI GCNGC 6 cut(s) 107, 150, 182, 265, 325, 328
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 387
HapII CCGG 2 cut(s) 33, 362
Hin1II CATG 1 cut(s) 20
HpaII CCGG 2 cut(s) 33, 362
HphI GGTGA 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 27, 89, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
Hsp92II CATG 1 cut(s) 20
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Lsp1109I GCAGC 6 cut(s) 93, 136, 168, 251, 314, 336
LweI GCATC 3 cut(s) 36, 102, 166
MaeI CTAG 2 cut(s) 290, 332
MhlI GDGCHC 8 cut(s) 10, 138, 191, 222, 243, 284, 305, 347
MnlI CCTC 2 cut(s) 24, 377
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 2 cut(s) 33, 362
MwoI GCNNNNNNNGC 1 cut(s) 133
NaeI GCCGGC 1 cut(s) 363
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 366, 388
PdiI GCCGGC 1 cut(s) 363
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 6 cut(s) 108, 151, 183, 266, 326, 329
Psp124BI GAGCTC 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 366, 388
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 6 cut(s) 107, 150, 182, 265, 325, 328
Sau96I GGNCC 1 cut(s) 386
SduI GDGCHC 8 cut(s) 10, 138, 191, 222, 243, 284, 305, 347
SfaNI GCATC 3 cut(s) 36, 102, 166
SfcI CTRYAG 1 cut(s) 245
SspMI CTAG 2 cut(s) 290, 332
SstI GAGCTC 1 cut(s) 10
TaaI ACNGT 1 cut(s) 52
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseI GCWGC 6 cut(s) 106, 149, 181, 264, 324, 327
XspI CTAG 2 cut(s) 290, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.