Prupe.1G049300_v2.0.a1

3-isopropylmalate

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
3463561 .. 3470464
6904 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G049300.1

Sequence Viewer

Length: 1530 bp
ATGGCGGCTTGCTCCACTGTTGCTCCACCATCCACCTCTTTCATCAGCAACAAGAAAGATTTGGGTCTCTCTGCTTTCTCTTCCGCATCGCCGCTTTCCAGTCAGAAATGCAAGAGAACATCCAAGACAATCTGTTCGGTCACTGCACCAAAACAATCAGAGCGCAAACCTGCCACTACTGGCTCGGTCAAGACGGGAATGACGATGACTGAGAAGATATTTGCTAGAGCTTCTGAGAAAACCCAGTTGAGCCCTGGTGAGAATGTTTGGGTTAACGTCGATGTTTTGATGACACATGATGTTTGTGGCCCTGGTTCCTTTGGGATCTTCAAGAAAGAGTTCGGCCAGAACGCCAAGGTTTGGGACCGTGAAAAGATTGTAATTATACCTGACCATTATATATTTACAAGTGATGAACGTGCGAATCGTAATGTGGATATTTTGAGGGATTTCTGCACAGAACAAAACATCAAGTACTTCTATGATATCAAGGATCTGAGTAATTTTAAGGCTAACCCAGATTATAAGGGTGTGTGCCATGTTGCTCTTGCTCAAGAAGGCCATTGCAGGCCTGGAGAGGTCCTACTGGGTACAGATTCTCACACCTGTACTGCGGGAGCTTTTGGACAATTTGCTACTGGAATCGGGAACACTGATGCAGGTTTTGTGTTGGGCACTGGGAAGCTCCTGCTCAAGGTACCTCCAACATTGAGATTTGTGATGGATGGTGAAATGCCTGACTATTTGCTTGCCAAAGATTTGATTCTGCAAATTATTGGTGAAATATCTGTTTCTGGTGCAACATATAAAGCTATGGAGTTTGTTGGCAGCACTGTTGAAAGCTTATCTATGGAAGAAAGGATGACATTATGCAACATGGTTGTTGAGGCTGGGGGTAAAAATGGTATTGTTCCTGCTGATAGCACCACATATAAGTACCTTGAGGATAAGACTTCTGTGCCCTATGAACCTGTATACAGTGATGACAAAGCAAGATTTCTGTCTGAGTACAGATTTGATATCTCAAAACTAGAGCCATTGGTGGCAAAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTGAAAATTGACAGAGTATATATTGGTTCTTGTACTGGGGGAAAAACAGAGGATTTTATGGCTGCAGCTAAAGTTTTTCTAGCATCAGGCAAAAAGGTCAAAGTGCCAACATTTCTTGTGCCTGCTACCCAAAAGGTTTGGATGGACGTGTATAGTCTTCCAGTACCAGGATCTGGTGGCAAGACTTGCTCACAGATATTTGAGGAAGCTGGATGTGACACGCCTGCGAGTCCCAGTTGCGGTGCTTGCTTAGGTGGTCCTAAAGACACCTATGCTCGCTTGAATGAACCTAAGGTATGTGTCTCAACAACAAACAGGAACTTCCCTGGCAGAATGGGCCACAAGGAAGGCGAGATATATCTTGCTTCCCCCTACACAGCTGCTGCATCTGCTTTGACCGGCTATGTCACCGACCCAAGAGAGTTTTTGCAGTAG

Protein Analysis

510

Amino Acids

55.25

Weight (kDa)

7.42

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
Acc36I ACCTGC 2 cut(s) 178, 650
Acc65I GGTACC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 697
AccB7I CCANNNNNTGG 2 cut(s) 360, 1268
AccI GTMKAC 1 cut(s) 975
AciI CCGC 5 cut(s) 5, 84, 92, 614, 1335
AclWI GGATC 3 cut(s) 332, 501, 1273
AcoI YGGCCR 1 cut(s) 343
AfaI GTAC 8 cut(s) 476, 592, 610, 699, 938, 1010, 1129, 1260
AfiI CCNNNNNNNGG 5 cut(s) 360, 694, 1262, 1268, 1334
AflIII ACRYGT 1 cut(s) 1242
AgsI TTSAA 3 cut(s) 331, 839, 1378
AjiI CACGTC 1 cut(s) 1243
AjnI CCWGG 5 cut(s) 253, 310, 571, 1261, 1420
AluBI AGCT 8 cut(s) 230, 620, 685, 812, 843, 1163, 1304, 1475
AluI AGCT 8 cut(s) 230, 620, 685, 812, 843, 1163, 1304, 1475
Alw26I GTCTC 2 cut(s) 71, 1402
AlwI GGATC 3 cut(s) 332, 501, 1273
AlwNI CAGNNNCTG 2 cut(s) 1268, 1478
AoxI GGCC 5 cut(s) 307, 343, 559, 569, 1432
ApeKI GCWGC 5 cut(s) 828, 1157, 1160, 1475, 1478
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
Asp700I GAANNNNTTC 1 cut(s) 338
Asp718I GGTACC 1 cut(s) 697
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 5 cut(s) 308, 364, 580, 1352, 1432
AsuHPI GGTGA 4 cut(s) 269, 740, 791, 1495
AvaII GGWCC 3 cut(s) 364, 580, 1352
AxyI CCTNAGG 1 cut(s) 1386
BaeGI GKGCMC 2 cut(s) 677, 963
BanI GGYRCC 1 cut(s) 697
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 1244
BbvI GCAGC 5 cut(s) 840, 1144, 1172, 1462, 1465
BccI CCATC 4 cut(s) 37, 715, 719, 1231
BciT130I CCWGG 5 cut(s) 255, 312, 573, 1263, 1422
BcoDI GTCTC 2 cut(s) 71, 1402
BfaI CTAG 3 cut(s) 225, 1031, 1175
BfmI CTRYAG 1 cut(s) 1158
BfuAI ACCTGC 2 cut(s) 178, 650
BisI GCNGC 7 cut(s) 6, 92, 829, 1158, 1161, 1476, 1479
BlsI GCNGC 7 cut(s) 7, 93, 830, 1159, 1162, 1477, 1480
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 5 cut(s) 255, 312, 573, 1263, 1422
Bme18I GGWCC 3 cut(s) 364, 580, 1352
BmgBI CACGTC 1 cut(s) 1243
BmgT120I GGNCC 5 cut(s) 308, 364, 580, 1352, 1432
BmiI GGNNCC 3 cut(s) 316, 365, 699
BmrFI CCNGG 5 cut(s) 255, 312, 573, 1263, 1422
BmrI ACTGGG 5 cut(s) 238, 596, 687, 1140, 1323
BmsI GCATC 4 cut(s) 95, 646, 1187, 1490
BmuI ACTGGG 5 cut(s) 238, 596, 687, 1140, 1323
BpiI GAAGAC 1 cut(s) 1244
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 1345
BpuEI CTTGAG 3 cut(s) 537, 677, 962
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 253, 310, 354, 1420
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 5 cut(s) 360, 694, 1262, 1268, 1334
Bse118I RCCGGY 1 cut(s) 1493
Bse1I ACTGG 9 cut(s) 99, 184, 244, 591, 643, 682, 1135, 1256, 1329
Bse21I CCTNAGG 1 cut(s) 1386
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 5 cut(s) 255, 312, 573, 1263, 1422
BseDI CCNNGG 4 cut(s) 253, 310, 354, 1420
BseGI GGATG 6 cut(s) 29, 119, 730, 867, 1242, 1313
BseLI CCNNNNNNNGG 5 cut(s) 360, 694, 1262, 1268, 1334
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 201, 225, 488, 996
BseNI ACTGG 9 cut(s) 99, 184, 244, 591, 643, 682, 1135, 1256, 1329
BseSI GKGCMC 2 cut(s) 677, 963
BseXI GCAGC 5 cut(s) 840, 1144, 1172, 1462, 1465
BseYI CCCAGC 1 cut(s) 890
BsgI GTGCAG 2 cut(s) 129, 439
BshFI GGCC 5 cut(s) 309, 345, 561, 571, 1434
BshNI GGYRCC 1 cut(s) 697
BsiSI CCGG 1 cut(s) 1494
BslFI GGGAC 2 cut(s) 377, 1311
BslI CCNNNNNNNGG 5 cut(s) 360, 694, 1262, 1268, 1334
BsmAI GTCTC 2 cut(s) 71, 1402
BsmFI GGGAC 2 cut(s) 377, 1311
BsmI GAATGC 1 cut(s) 1091
BsnI GGCC 5 cut(s) 309, 345, 561, 571, 1434
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 254, 677, 963
Bsp143I GATC 3 cut(s) 324, 493, 1265
BspACI CCGC 5 cut(s) 5, 84, 92, 614, 1335
BspANI GGCC 5 cut(s) 309, 345, 561, 571, 1434
BspCNI CTCAG 4 cut(s) 202, 226, 489, 997
BspLI GGNNCC 3 cut(s) 316, 365, 699
BspMAI CTGCAG 1 cut(s) 1162
BspMI ACCTGC 2 cut(s) 178, 650
BspPI GGATC 3 cut(s) 332, 501, 1273
BspT107I GGYRCC 1 cut(s) 697
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 1493
BsrI ACTGG 9 cut(s) 99, 184, 244, 591, 643, 682, 1135, 1256, 1329
BssAI RCCGGY 1 cut(s) 1493
BssECI CCNNGG 4 cut(s) 253, 310, 354, 1420
BssMI GATC 3 cut(s) 324, 493, 1265
BssNAI GTATAC 1 cut(s) 976
BssT1I CCWWGG 1 cut(s) 354
Bst1107I GTATAC 1 cut(s) 976
Bst2UI CCWGG 5 cut(s) 255, 312, 573, 1263, 1422
Bst4CI ACNGT 4 cut(s) 19, 368, 835, 980
Bst6I CTCTTC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 1281
BstC8I GCNNGC 7 cut(s) 10, 569, 750, 1218, 1320, 1342, 1372
BstDEI CTNAG 6 cut(s) 210, 234, 497, 1005, 1345, 1386
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 6 cut(s) 29, 119, 730, 867, 1242, 1313
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 327, 496, 1268
BstMAI GTCTC 2 cut(s) 71, 1402
BstMBI GATC 3 cut(s) 324, 493, 1265
BstMWI GCNNNNNNNGC 4 cut(s) 1281, 1341, 1431, 1484
BstNI CCWGG 5 cut(s) 255, 312, 573, 1263, 1422
BstSCI CCNGG 5 cut(s) 253, 310, 571, 1261, 1420
BstSFI CTRYAG 1 cut(s) 1158
BstSLI GKGCMC 2 cut(s) 677, 963
BstV1I GCAGC 5 cut(s) 840, 1144, 1172, 1462, 1465
BstV2I GAAGAC 1 cut(s) 1244
BstX2I RGATCY 3 cut(s) 324, 493, 1265
BstYI RGATCY 3 cut(s) 324, 493, 1265
BstZ17I GTATAC 1 cut(s) 976
Bsu36I CCTNAGG 1 cut(s) 1386
BsuRI GGCC 5 cut(s) 309, 345, 561, 571, 1434
BtgZI GCGATG 1 cut(s) 72
BtrI CACGTC 1 cut(s) 1243
BtsCI GGATG 6 cut(s) 29, 119, 730, 867, 1242, 1313
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 6 cut(s) 15, 141, 651, 675, 831, 985
BveI ACCTGC 2 cut(s) 178, 650
Cac8I GCNNGC 7 cut(s) 10, 569, 750, 1218, 1320, 1342, 1372
CaiI CAGNNNCTG 2 cut(s) 1268, 1478
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 1493
Cfr13I GGNCC 5 cut(s) 308, 364, 580, 1352, 1432
Csp6I GTAC 8 cut(s) 475, 591, 609, 698, 937, 1009, 1128, 1259
CviAII CATG 3 cut(s) 296, 539, 877
CviQI GTAC 8 cut(s) 475, 591, 609, 698, 937, 1009, 1128, 1259
DdeI CTNAG 6 cut(s) 210, 234, 497, 1005, 1345, 1386
DpnI GATC 3 cut(s) 326, 495, 1267
DpnII GATC 3 cut(s) 324, 493, 1265
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 71
Eco32I GATATC 2 cut(s) 487, 1021
Eco47I GGWCC 3 cut(s) 364, 580, 1352
Eco81I CCTNAGG 1 cut(s) 1386
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 5 cut(s) 253, 310, 571, 1261, 1420
EcoRV GATATC 2 cut(s) 487, 1021
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 299, 542, 880
FaqI GGGAC 2 cut(s) 377, 1311
FatI CATG 3 cut(s) 295, 538, 876
FauI CCCGC 1 cut(s) 607
FblI GTMKAC 1 cut(s) 975
Fnu4HI GCNGC 7 cut(s) 6, 92, 829, 1158, 1161, 1476, 1479
FokI GGATG 6 cut(s) 16, 106, 737, 874, 1249, 1320
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 7 cut(s) 6, 92, 829, 1158, 1161, 1476, 1479
FspBI CTAG 3 cut(s) 225, 1031, 1175
GlaI GCGC 1 cut(s) 164
GluI GCNGC 7 cut(s) 6, 92, 829, 1158, 1161, 1476, 1479
GsaI CCCAGC 1 cut(s) 894
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 5 cut(s) 309, 345, 561, 571, 1434
HapII CCGG 1 cut(s) 1494
HhaI GCGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 299, 542, 880
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 5 cut(s) 424, 596, 642, 763, 1324
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 1494
HphI GGTGA 4 cut(s) 269, 740, 791, 1495
Hpy166II GTNNAC 2 cut(s) 274, 976
Hpy188I TCNGA 5 cut(s) 105, 160, 235, 498, 1006
Hpy188III TCNNGA 5 cut(s) 190, 331, 554, 646, 1061
Hpy8I GTNNAC 2 cut(s) 274, 976
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 551, 1436
HpyCH4III ACNGT 4 cut(s) 19, 368, 835, 980
HpyCH4IV ACGT 3 cut(s) 276, 418, 1242
HpyF10VI GCNNNNNNNGC 4 cut(s) 1281, 1341, 1431, 1484
HpyF3I CTNAG 6 cut(s) 210, 234, 497, 1005, 1345, 1386
HpySE526I ACGT 3 cut(s) 276, 418, 1242
Hsp92II CATG 3 cut(s) 299, 542, 880
HspAI GCGC 1 cut(s) 163
KpnI GGTACC 1 cut(s) 701
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 324, 493, 1265
LmnI GCTCC 4 cut(s) 17, 28, 617, 690
Lsp1109I GCAGC 5 cut(s) 840, 1144, 1172, 1462, 1465
LweI GCATC 4 cut(s) 95, 646, 1187, 1490
MaeI CTAG 3 cut(s) 225, 1031, 1175
MaeII ACGT 3 cut(s) 276, 418, 1242
MaeIII GTNAC 3 cut(s) 139, 1310, 1501
MalI GATC 3 cut(s) 326, 495, 1267
MboI GATC 3 cut(s) 324, 493, 1265
MboII GAAGA 5 cut(s) 72, 226, 319, 866, 1244
MflI RGATCY 3 cut(s) 324, 493, 1265
MhlI GDGCHC 3 cut(s) 254, 677, 963
MluCI AATT 5 cut(s) 381, 502, 629, 771, 1101
MlyI GAGTC 1 cut(s) 1333
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 9 cut(s) 46, 438, 571, 711, 880, 937, 1062, 1138, 1291
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 2 cut(s) 273, 507
MspA1I CMGCKG 1 cut(s) 1475
MspI CCGG 1 cut(s) 1494
MspR9I CCNGG 5 cut(s) 255, 312, 573, 1263, 1422
Mva1269I GAATGC 1 cut(s) 1091
MvaI CCWGG 5 cut(s) 255, 312, 573, 1263, 1422
MwoI GCNNNNNNNGC 4 cut(s) 1281, 1341, 1431, 1484
NdeII GATC 3 cut(s) 324, 493, 1265
NlaIII CATG 3 cut(s) 299, 542, 880
NlaIV GGNNCC 3 cut(s) 316, 365, 699
NmuCI GTSAC 3 cut(s) 139, 1310, 1501
PceI AGGCCT 1 cut(s) 571
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 424
PctI GAATGC 1 cut(s) 1091
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 4 cut(s) 424, 596, 642, 763
PflMI CCANNNNNTGG 2 cut(s) 360, 1268
PkrI GCNGC 7 cut(s) 7, 93, 830, 1159, 1162, 1477, 1480
PleI GAGTC 1 cut(s) 1332
PpsI GAGTC 1 cut(s) 1332
PpuMI RGGWCCY 1 cut(s) 580
PsiI TTATAA 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 5 cut(s) 253, 310, 571, 1261, 1420
PspFI CCCAGC 1 cut(s) 890
PspGI CCWGG 5 cut(s) 253, 310, 571, 1261, 1420
PspN4I GGNNCC 3 cut(s) 316, 365, 699
PspPI GGNCC 5 cut(s) 308, 364, 580, 1352, 1432
PspPPI RGGWCCY 1 cut(s) 580
PstI CTGCAG 1 cut(s) 1162
PstNI CAGNNNCTG 2 cut(s) 1268, 1478
PsuI RGATCY 3 cut(s) 324, 493, 1265
PvuII CAGCTG 1 cut(s) 1475
RsaI GTAC 8 cut(s) 476, 592, 610, 699, 938, 1010, 1129, 1260
RsaNI GTAC 8 cut(s) 475, 591, 609, 698, 937, 1009, 1128, 1259
SaqAI TTAA 2 cut(s) 273, 507
SatI GCNGC 7 cut(s) 6, 92, 829, 1158, 1161, 1476, 1479
Sau3AI GATC 3 cut(s) 324, 493, 1265
Sau96I GGNCC 5 cut(s) 308, 364, 580, 1352, 1432
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 1 cut(s) 1333
ScrFI CCNGG 5 cut(s) 255, 312, 573, 1263, 1422
SduI GDGCHC 3 cut(s) 254, 677, 963
SfaNI GCATC 4 cut(s) 95, 646, 1187, 1490
SfcI CTRYAG 1 cut(s) 1158
SinI GGWCC 3 cut(s) 364, 580, 1352
SmlI CTYRAG 3 cut(s) 552, 692, 941
SmoI CTYRAG 3 cut(s) 552, 692, 941
Sse9I AATT 5 cut(s) 381, 502, 629, 771, 1101
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 5 cut(s) 5, 84, 92, 614, 1335
SspMI CTAG 3 cut(s) 225, 1031, 1175
StuI AGGCCT 1 cut(s) 571
StyD4I CCNGG 5 cut(s) 253, 310, 571, 1261, 1420
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 4 cut(s) 19, 368, 835, 980
TaiI ACGT 3 cut(s) 279, 421, 1245
TaqI TCGA 1 cut(s) 279
TaqII GACCGA 2 cut(s) 127, 175
TasI AATT 5 cut(s) 381, 502, 629, 771, 1101
TatI WGTACW 4 cut(s) 474, 608, 1008, 1127
TauI GCSGC 2 cut(s) 8, 94
TfiI GAWTC 4 cut(s) 424, 596, 642, 763
Tru1I TTAA 2 cut(s) 273, 507
Tru9I TTAA 2 cut(s) 273, 507
TscAI CASTG 6 cut(s) 22, 148, 658, 682, 838, 985
TseFI GTSAC 3 cut(s) 139, 1310, 1501
TseI GCWGC 5 cut(s) 828, 1157, 1160, 1475, 1478
Tsp45I GTSAC 3 cut(s) 139, 1310, 1501
TspDTI ATGAA 4 cut(s) 31, 429, 981, 1395
TspRI CASTG 6 cut(s) 22, 148, 658, 682, 838, 985
Van91I CCANNNNNTGG 2 cut(s) 360, 1268
VpaK11BI GGWCC 3 cut(s) 364, 580, 1352
XagI CCTNNNNNAGG 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 569
XmiI GTMKAC 1 cut(s) 975
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 3 cut(s) 225, 1031, 1175
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.