Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

298168 .. 299282

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000082.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgcaagagatcagtctccaagaaaatctgctccatcatggcgccacagcaatcggagaggaagccagccactactggctcatttttgatattgggttttggttgattttacatgtcgagacgggaatgataatgacggagaagatattggctagggcttttgagaaacccgaattgagcccaggtgacaatgtttgggttaacattgatgttttgatgacccatgacgtgtgtggccctggttcatttggaatcttcaagaaagagtttggacataatgcaaaggtttgggacagagaaaagattgtaatcatacctgaccattatatatttactactgatgaacgtgcaaaccataatatggatatcttgagggatttctgcacggagcagaacatcaagtacttctatgatatcaaggatcttggtaactttaaggctaacccagattacaagggtgtatgccatgttgctcttgctcaagaaggtcattgcaggcctggagaggtgctgctaggtatagattctcacacctgcaccactggagcttttggacaatttgctattggaatcgggaatactaatgcaggtttcgtattgggcactgggaacttttgctcaaggtttgcggatgttgcatttttgttttcattctctctaatctcatgtctgatagattttatgcaaatgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

5.15

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	2 cut(s)	542, 578
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	2 cut(s)	112, 228
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	181, 238, 499
AluBI	AGCT	1 cut(s)	548
AluI	AGCT	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	20, 113
AlwI	GGATC	1 cut(s)	429
AoxI	GGCC	2 cut(s)	235, 497
ApeKI	GCWGC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	605
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	183, 240, 501
BcoDI	GTCTC	2 cut(s)	20, 113
BfaI	CTAG	2 cut(s)	153, 515
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	2 cut(s)	542, 578
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	183, 240, 501
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	3 cut(s)	183, 240, 501
BmrI	ACTGGG	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	615
BpmI	CTGGAG	2 cut(s)	522, 564
BpuEI	CTTGAG	3 cut(s)	391, 465, 604
BsaBI	GATNNNNATC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	181, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	3 cut(s)	80, 547, 610
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	3 cut(s)	183, 240, 501
BseDI	CCNNGG	2 cut(s)	181, 238
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	490
BseNI	ACTGG	3 cut(s)	80, 547, 610
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	498
BsgI	GTGCAG	2 cut(s)	367, 520
BshFI	GGCC	2 cut(s)	237, 499
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	20, 113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	237, 499
Bsp1286I	GDGCHC	2 cut(s)	182, 605
Bsp143I	GATC	2 cut(s)	9, 421
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	2 cut(s)	237, 499
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	2 cut(s)	542, 578
BspPI	GGATC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	80, 547, 610
BssECI	CCNNGG	2 cut(s)	181, 238
BssMI	GATC	2 cut(s)	9, 421
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	3 cut(s)	183, 240, 501
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	67, 497
BstF5I	GGATG	1 cut(s)	637
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	12, 424
BstMAI	GTCTC	2 cut(s)	20, 113
BstMBI	GATC	2 cut(s)	9, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	3 cut(s)	183, 240, 501
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	181, 238, 499
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	237, 499
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	540, 603
BveI	ACCTGC	2 cut(s)	542, 578
Cac8I	GCNNGC	2 cut(s)	67, 497
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	6 cut(s)	38, 113, 224, 467, 666, 693
CviQI	GTAC	1 cut(s)	403
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	2 cut(s)	11, 423
DpnII	GATC	2 cut(s)	9, 421
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	182
Eco32I	GATATC	2 cut(s)	367, 415
EcoRII	CCWGG	3 cut(s)	181, 238, 499
EcoRV	GATATC	2 cut(s)	367, 415
EcoT38I	GRGCYC	1 cut(s)	182
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	6 cut(s)	41, 116, 227, 470, 669, 696
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	6 cut(s)	37, 112, 223, 466, 665, 692
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	512
FspBI	CTAG	2 cut(s)	153, 515
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	512
GsuI	CTGGAG	2 cut(s)	522, 564
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	237, 499
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	41, 116, 227, 470, 669, 696
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	252, 524, 570
HpaI	GTTAAC	1 cut(s)	202
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	56, 672
Hpy188III	TCNNGA	5 cut(s)	118, 259, 370, 482, 574
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	228, 346
HpyCH4V	TGCA	9 cut(s)	4, 281, 350, 384, 495, 537, 587, 638, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpySE526I	ACGT	2 cut(s)	228, 346
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	6 cut(s)	41, 116, 227, 470, 669, 696
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	9, 421
LmnI	GCTCC	3 cut(s)	36, 388, 545
Lsp1109I	GCAGC	1 cut(s)	498
MaeI	CTAG	2 cut(s)	153, 515
MaeII	ACGT	2 cut(s)	228, 346
MaeIII	GTNAC	2 cut(s)	185, 428
MalI	GATC	2 cut(s)	11, 423
MboI	GATC	2 cut(s)	9, 421
MboII	GAAGA	2 cut(s)	154, 247
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	182, 605
MluCI	AATT	2 cut(s)	173, 557
Mly113I	GGCGCC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	52, 366, 499
MseI	TTAA	2 cut(s)	201, 435
MspR9I	CCNGG	3 cut(s)	183, 240, 501
MvaI	CCWGG	3 cut(s)	183, 240, 501
MwoI	GCNNNNNNNGC	1 cut(s)	635
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	2 cut(s)	9, 421
NlaIII	CATG	6 cut(s)	41, 116, 227, 470, 669, 696
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	499
PciI	ACATGT	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	252, 524, 570
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	513
PluTI	GGCGCC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	112
Psp6I	CCWGG	3 cut(s)	181, 238, 499
PspGI	CCWGG	3 cut(s)	181, 238, 499
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	201, 435
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	2 cut(s)	9, 421
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	404
ScrFI	CCNGG	3 cut(s)	183, 240, 501
SduI	GDGCHC	2 cut(s)	182, 605
SfoI	GGCGCC	1 cut(s)	43
SmlI	CTYRAG	3 cut(s)	370, 480, 619
SmoI	CTYRAG	3 cut(s)	370, 480, 619
Sse9I	AATT	2 cut(s)	173, 557
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	629
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	153, 515
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	181, 238, 499
TaiI	ACGT	2 cut(s)	231, 349
TaqI	TCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	173, 557
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	3 cut(s)	252, 524, 570
Tru1I	TTAA	2 cut(s)	201, 435
Tru9I	TTAA	2 cut(s)	201, 435
TscAI	CASTG	2 cut(s)	547, 610
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	511
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	234, 357, 639
TspGWI	ACGGA	2 cut(s)	152, 401
TspRI	CASTG	2 cut(s)	547, 610
Van91I	CCANNNNNTGG	1 cut(s)	361
XceI	RCATGY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	153, 515
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.