Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

30271095 .. 30271954

Gene Structure 860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0280700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATGTCCTTATCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTTGTAATGACATAAAAACTCTCATAGCTGAGATTGATCTTCCCGTGAGTGCTTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCACCTCTTCGAAGCAATTTATTCGTGCCCGTTCTTCAGTTGATGACTGGAAGAATCATATTGCTTCAAAGAACCCCAGGGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACGACCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCTGTTTGTAGTGTCTTTGCCGCAGCCTTTTCTGGTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATGTACTTTCTAGTGGTAGAGTTACGGTACTGAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGAAAGGAAGGCACATAATCTTTCCCCAAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

254

Amino Acids

28.25

Weight (kDa)

6.34

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	384, 664
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	2 cut(s)	270, 705
AfaI	GTAC	3 cut(s)	242, 594, 618
AgsI	TTSAA	3 cut(s)	318, 517, 709
AjiI	CACGTC	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	91, 191, 361, 628
AluI	AGCT	4 cut(s)	91, 191, 361, 628
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	2 cut(s)	384, 664
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	260
BaeGI	GKGCMC	2 cut(s)	280, 544
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	1 cut(s)	635
BcgI	CGANNNNNNTGC	4 cut(s)	132, 166, 254, 288
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	672
BisI	GCNGC	2 cut(s)	477, 480
BlsI	GCNGC	2 cut(s)	478, 481
Bme1390I	CCNGG	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	685
BmrFI	CCNGG	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	326, 327, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bse1I	ACTGG	2 cut(s)	302, 378
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	3 cut(s)	326, 327, 755
BseGI	GGATG	2 cut(s)	138, 226
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	183, 414
BseNI	ACTGG	2 cut(s)	302, 378
BseSI	GKGCMC	2 cut(s)	280, 544
BseXI	GCAGC	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	686
BsmAI	GTCTC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	686
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	280, 544
Bsp143I	GATC	3 cut(s)	199, 376, 669
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	2 cut(s)	184, 413
BspPI	GGATC	2 cut(s)	384, 664
BspT104I	TTCGAA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	302, 378
BssECI	CCNNGG	3 cut(s)	326, 327, 755
BssMI	GATC	3 cut(s)	199, 376, 669
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	3 cut(s)	341, 454, 616
Bst6I	CTCTTC	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	426, 499
BstDEI	CTNAG	2 cut(s)	192, 400
BstF5I	GGATG	2 cut(s)	138, 226
BstKTI	GATC	3 cut(s)	202, 379, 672
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	3 cut(s)	199, 376, 669
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	2 cut(s)	280, 544
BstV1I	GCAGC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	686
BtrI	CACGTC	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	138, 226
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 371
Cac8I	GCNNGC	2 cut(s)	426, 499
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	685
Csp6I	GTAC	3 cut(s)	241, 593, 617
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	7 cut(s)	74, 91, 191, 361, 482, 628, 686
CviKI_1	RGCY	7 cut(s)	74, 91, 191, 361, 482, 628, 686
CviQI	GTAC	3 cut(s)	241, 593, 617
DdeI	CTNAG	2 cut(s)	192, 400
DpnI	GATC	3 cut(s)	201, 378, 671
DpnII	GATC	3 cut(s)	199, 376, 669
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	755
Eco57I	CTGAAG	2 cut(s)	270, 705
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	1 cut(s)	132
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	477, 480
FokI	GGATG	2 cut(s)	145, 233
Fsp4HI	GCNGC	2 cut(s)	477, 480
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	477, 480
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	686
Hin1II	CATG	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	28, 149, 304, 368
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	241, 450
Hpy188I	TCNGA	2 cut(s)	33, 724
Hpy188III	TCNNGA	1 cut(s)	709
Hpy8I	GTNNAC	2 cut(s)	241, 450
HpyAV	CCTTC	3 cut(s)	7, 436, 730
HpyCH4III	ACNGT	3 cut(s)	341, 454, 616
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	2 cut(s)	44, 497
HpyF3I	CTNAG	2 cut(s)	192, 400
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	199, 376, 669
LpnPI	CCDG	7 cut(s)	60, 283, 313, 340, 359, 474, 614
Lsp1109I	GCAGC	1 cut(s)	491
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	201, 378, 671
MboI	GATC	3 cut(s)	199, 376, 669
MboII	GAAGA	6 cut(s)	194, 249, 276, 313, 707, 710
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	280, 544
MluCI	AATT	4 cut(s)	137, 266, 582, 712
MlyI	GAGTC	2 cut(s)	22, 158
MnlI	CCTC	4 cut(s)	55, 72, 265, 698
MseI	TTAA	3 cut(s)	393, 419, 552
MslI	CAYNNNNRTG	1 cut(s)	535
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	328
NdeII	GATC	3 cut(s)	199, 376, 669
NlaIII	CATG	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	260
PasI	CCCWGGG	1 cut(s)	327
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	304, 368
PkrI	GCNGC	2 cut(s)	478, 481
PleI	GAGTC	2 cut(s)	22, 157
PpsI	GAGTC	2 cut(s)	22, 157
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	3 cut(s)	242, 594, 618
RsaNI	GTAC	3 cut(s)	241, 593, 617
RseI	CAYNNNNRTG	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	393, 419, 552
SatI	GCNGC	2 cut(s)	477, 480
Sau3AI	GATC	3 cut(s)	199, 376, 669
Sau96I	GGNCC	1 cut(s)	685
SchI	GAGTC	2 cut(s)	22, 158
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	280, 544
SfcI	CTRYAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	535
Sse9I	AATT	4 cut(s)	137, 266, 582, 712
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	3 cut(s)	341, 454, 616
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	1 cut(s)	260
TasI	AATT	4 cut(s)	137, 266, 582, 712
TatI	WGTACW	2 cut(s)	240, 592
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	304, 368
Tru1I	TTAA	3 cut(s)	393, 419, 552
Tru9I	TTAA	3 cut(s)	393, 419, 552
TscAI	CASTG	2 cut(s)	51, 378
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	51, 378
XapI	RAATTY	1 cut(s)	712
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.