Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

55615056 .. 55620410

Gene Structure 5355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCGAGACGGGAATGACAATGACGGAGAAGCTATTGGCTAGGGCTTTTGAGAAACCCGAATTGAGCCCAAGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTATGGCCCTAGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTAATCATTATATATTTACTACTGATGAACGTGCAAACTGTAATATGGATATCTTGAGGGATTTCTGCACGGAGCAAAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTGCTGCTAGGTACAGATTCTCACACCTGCACTGCTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGAATACTGATGCAGGTTTCATATTGGGCACTGGGAAGCTTTTGCTCAAGGAGCAGTTGACCGTGCTTTTGATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

194

Amino Acids

21.52

Weight (kDa)

5.52

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	46 - 185	3e-16	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	473
Acc36I	ACCTGC	2 cut(s)	473, 509
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	335, 451
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	3 cut(s)	76, 479, 544
AluI	AGCT	3 cut(s)	76, 479, 544
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	166, 428
ApeKI	GCWGC	1 cut(s)	442
ArsI	GACNNNNNNTTYG	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	3 cut(s)	84, 171, 446
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	2 cut(s)	473, 509
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	453, 495
BpuEI	CTTGAG	3 cut(s)	322, 396, 536
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	3 cut(s)	43, 502, 541
Bse3DI	GCAATG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	432
BseJI	GATNNNNATC	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	421
BseNI	ACTGG	3 cut(s)	43, 502, 541
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	429
BsgI	GTGCAG	2 cut(s)	298, 451
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	168, 430
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	168, 430
Bsp1286I	GDGCHC	2 cut(s)	113, 536
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	168, 430
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	473, 509
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	421
BsrI	ACTGG	3 cut(s)	43, 502, 541
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	287, 568
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	30, 428
BstDEI	CTNAG	1 cut(s)	582
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 556
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	168, 430
BtrI	CACGTC	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	468, 534
BveI	ACCTGC	2 cut(s)	473, 509
Cac8I	GCNNGC	2 cut(s)	30, 428
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	334, 450
CviAII	CATG	2 cut(s)	155, 398
CviQI	GTAC	2 cut(s)	334, 450
DdeI	CTNAG	1 cut(s)	582
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	113
Eco32I	GATATC	2 cut(s)	298, 346
EcoRII	CCWGG	1 cut(s)	430
EcoRV	GATATC	2 cut(s)	298, 346
EcoT38I	GRGCYC	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	2 cut(s)	158, 401
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	154, 397
Fnu4HI	GCNGC	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	3 cut(s)	84, 171, 446
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	443
GsuI	CTGGAG	2 cut(s)	453, 495
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	168, 430
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	158, 401
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	133, 564
HindII	GTYRAC	2 cut(s)	133, 564
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	183, 455, 501
HpaI	GTTAAC	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	133, 564
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	5 cut(s)	49, 190, 301, 413, 505
Hpy8I	GTNNAC	2 cut(s)	133, 564
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	287, 568
HpyCH4IV	ACGT	2 cut(s)	159, 277
HpyCH4V	TGCA	6 cut(s)	212, 281, 315, 426, 468, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 556
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	159, 277
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	158, 401
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	4 cut(s)	19, 319, 476, 556
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	3 cut(s)	84, 171, 446
MaeII	ACGT	2 cut(s)	159, 277
MaeIII	GTNAC	2 cut(s)	116, 359
MalI	GATC	1 cut(s)	354
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	113, 536
MluCI	AATT	2 cut(s)	104, 488
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	297, 430
MseI	TTAA	2 cut(s)	132, 366
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	19, 556
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	158, 401
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	183, 455, 501
PkrI	GCNGC	1 cut(s)	444
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	335, 451
RsaNI	GTAC	2 cut(s)	334, 450
SaqAI	TTAA	2 cut(s)	132, 366
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	113, 536
SfaNI	GCATC	1 cut(s)	505
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	3 cut(s)	301, 411, 551
SmoI	CTYRAG	3 cut(s)	301, 411, 551
Sse9I	AATT	2 cut(s)	104, 488
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	84, 171, 446
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	287, 568
TaiI	ACGT	2 cut(s)	162, 280
TaqI	TCGA	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	104, 488
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	183, 455, 501
Tru1I	TTAA	2 cut(s)	132, 366
Tru9I	TTAA	2 cut(s)	132, 366
TscAI	CASTG	2 cut(s)	475, 541
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	165, 288, 514
TspGWI	ACGGA	2 cut(s)	83, 332
TspRI	CASTG	2 cut(s)	475, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	3 cut(s)	84, 171, 446
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.