Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

45829655 .. 45855016

Gene Structure 25362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTTGGGTTTTTCAGCGACATTGATATAGAACGCCTCATTGCGCTCGGCGAACCCGAGGCTGATGACGGCGTGCTTGCCGGTGCAGTCCTCGATCTTAAGGACGAAGTAGCTCGACGAGTCGAGCACGGTCTCGACGAAGGTCGCTGGAGTTCGGATCCTCCAGTCGGATCTCGCACTGGTCCTTGTGCACGACACTACCCAGATCTAACCCGTCCAGATCTTGTCGGACTTGAGCCACTTGCCACAATTATACACGCCGGATGTCGATCGCAGTGGGATTTTGTACACCGCTACCTCACGCACCACCACCAGCTTCAAAATCCTCGTCGCCACCGCGATCCATCTCCCTTGTCACTTTTCCTCAGACCTATGAGACTAAATTCCCTGAGAGCCTATAGGATTATGTACATTGGGAATGTGAAGAAGGCAGCTGGTATGCCTAGATGCAAGAGATCACTCTCCAAGAAAATCTGCTCCGTCATATCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCACTGCAGGCCTGGAGAGGTGACAAAAGAAAGATTTGAGGCATCGGAAGTTATAGAAGTGATTTTAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

325

Amino Acids

36.85

Weight (kDa)

8.08

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	505
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	292, 337, 505
AclWI	GGATC	5 cut(s)	152, 165, 178, 335, 843
AcsI	RAATTY	2 cut(s)	382, 791
AfaI	GTAC	3 cut(s)	288, 410, 818
AfiI	CCNNNNNNNGG	2 cut(s)	167, 775
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	2 cut(s)	320, 673
AjiI	CACGTC	1 cut(s)	643
AjnI	CCWGG	3 cut(s)	595, 652, 913
AluBI	AGCT	3 cut(s)	113, 316, 434
AluI	AGCT	3 cut(s)	113, 316, 434
Alw21I	GWGCWC	2 cut(s)	129, 193
Alw26I	GTCTC	2 cut(s)	137, 370
Alw44I	GTGCAC	1 cut(s)	189
AlwI	GGATC	5 cut(s)	152, 165, 178, 335, 843
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	649, 911
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	2 cut(s)	382, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	182, 650
AsuHPI	GGTGA	2 cut(s)	611, 934
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	596
Bbv12I	GWGCWC	2 cut(s)	129, 193
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	3 cut(s)	597, 654, 915
BcoDI	GTCTC	2 cut(s)	137, 370
BfaI	CTAG	2 cut(s)	444, 567
BfmI	CTRYAG	2 cut(s)	397, 907
BfrI	CTTAAG	1 cut(s)	98
BglII	AGATCT	2 cut(s)	205, 220
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	3 cut(s)	597, 654, 915
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	182, 650
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	597, 654, 915
BmsI	GCATC	2 cut(s)	437, 953
BoxI	GACNNNNGTC	1 cut(s)	141
BpmI	CTGGAG	3 cut(s)	147, 169, 936
BpuEI	CTTGAG	3 cut(s)	254, 805, 879
BsaBI	GATNNNNATC	2 cut(s)	268, 722
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	57, 595, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 775
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	3 cut(s)	164, 184, 526
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	2 cut(s)	268, 722
BseBI	CCWGG	3 cut(s)	597, 654, 915
BseDI	CCNNGG	3 cut(s)	57, 595, 652
BseGI	GGATG	1 cut(s)	269
BseJI	GATNNNNATC	2 cut(s)	268, 722
BseLI	CCNNNNNNNGG	2 cut(s)	167, 775
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	379, 380, 567
BseNI	ACTGG	3 cut(s)	164, 184, 526
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	651, 913
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	129, 193
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	81, 261
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	167, 775
BsmAI	GTCTC	2 cut(s)	137, 370
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	2 cut(s)	651, 913
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	129, 193, 596
Bsp1407I	TGTACA	2 cut(s)	286, 408
Bsp143I	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
BspACI	CCGC	3 cut(s)	292, 337, 505
BspANI	GGCC	2 cut(s)	651, 913
BspCNI	CTCAG	3 cut(s)	378, 381, 568
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	911
BspPI	GGATC	5 cut(s)	152, 165, 178, 335, 843
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	80
BsrGI	TGTACA	2 cut(s)	286, 408
BsrI	ACTGG	3 cut(s)	164, 184, 526
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	57, 595, 652
BssMI	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
Bst2UI	CCWGG	3 cut(s)	597, 654, 915
Bst4CI	ACNGT	2 cut(s)	131, 770
BstAFI	CTTAAG	1 cut(s)	98
BstAUI	TGTACA	2 cut(s)	286, 408
BstC8I	GCNNGC	5 cut(s)	74, 78, 513, 762, 911
BstDEI	CTNAG	3 cut(s)	365, 389, 576
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	9 cut(s)	97, 160, 173, 208, 223, 272, 343, 458, 838
BstMAI	GTCTC	2 cut(s)	137, 370
BstMBI	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	502
BstNI	CCWGG	3 cut(s)	597, 654, 915
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	595, 652, 913
BstSFI	CTRYAG	2 cut(s)	397, 907
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	443
BstX2I	RGATCY	5 cut(s)	157, 170, 205, 220, 835
BstYI	RGATCY	5 cut(s)	157, 170, 205, 220, 835
BsuRI	GGCC	2 cut(s)	651, 913
BtrI	CACGTC	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	269
BtsI	GCAGTG	2 cut(s)	281, 904
BtsIMutI	CAGTG	3 cut(s)	177, 281, 904
Cac8I	GCNNGC	5 cut(s)	74, 78, 513, 762, 911
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	182, 650
Csp6I	GTAC	3 cut(s)	287, 409, 817
CviAII	CATG	2 cut(s)	638, 881
CviQI	GTAC	3 cut(s)	287, 409, 817
DdeI	CTNAG	3 cut(s)	365, 389, 576
DpnI	GATC	9 cut(s)	96, 159, 172, 207, 222, 271, 342, 457, 837
DpnII	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
Eco147I	AGGCCT	1 cut(s)	913
Eco24I	GRGCYC	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	2 cut(s)	781, 829
Eco47I	GGWCC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	595, 652, 913
EcoRV	GATATC	2 cut(s)	781, 829
EcoT38I	GRGCYC	1 cut(s)	596
FaeI	CATG	2 cut(s)	641, 884
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	2 cut(s)	637, 880
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	276
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	444, 567
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	432
GsuI	CTGGAG	3 cut(s)	147, 169, 936
HaeIII	GGCC	2 cut(s)	651, 913
HapII	CCGG	2 cut(s)	81, 261
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	641, 884
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	2 cut(s)	120, 666
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	81, 261
HphI	GGTGA	2 cut(s)	611, 934
Hpy166II	GTNNAC	3 cut(s)	191, 289, 616
Hpy188I	TCNGA	7 cut(s)	157, 170, 230, 368, 502, 577, 949
Hpy188III	TCNNGA	6 cut(s)	134, 218, 532, 673, 784, 896
Hpy8I	GTNNAC	3 cut(s)	191, 289, 616
Hpy99I	CGWCG	3 cut(s)	120, 140, 333
HpyAV	CCTTC	3 cut(s)	134, 421, 893
HpyCH4III	ACNGT	2 cut(s)	131, 770
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	7 cut(s)	86, 191, 450, 695, 764, 798, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	502
HpyF3I	CTNAG	3 cut(s)	365, 389, 576
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	2 cut(s)	641, 884
HspAI	GCGC	1 cut(s)	44
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
LmnI	GCTCC	2 cut(s)	482, 502
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	437, 953
MaeI	CTAG	2 cut(s)	444, 567
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	5 cut(s)	354, 599, 842, 902, 922
MalI	GATC	9 cut(s)	96, 159, 172, 207, 222, 271, 342, 457, 837
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
MboII	GAAGA	3 cut(s)	436, 568, 661
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	5 cut(s)	157, 170, 205, 220, 835
MhlI	GDGCHC	3 cut(s)	129, 193, 596
MluCI	AATT	4 cut(s)	249, 382, 587, 791
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	148, 208
MseI	TTAA	3 cut(s)	99, 615, 849
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	2 cut(s)	81, 261
MspR9I	CCNGG	3 cut(s)	597, 654, 915
MunI	CAATTG	1 cut(s)	587
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	3 cut(s)	597, 654, 915
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	502
NdeII	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
NlaIII	CATG	2 cut(s)	641, 884
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	4 cut(s)	354, 599, 902, 922
PceI	AGGCCT	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 135
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	666
PkrI	GCNGC	1 cut(s)	433
Ple19I	CGATCG	1 cut(s)	272
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PshAI	GACNNNNGTC	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	595, 652, 913
PspGI	CCWGG	3 cut(s)	595, 652, 913
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	182, 650
PsrI	GAACNNNNNNTAC	2 cut(s)	800, 832
PstI	CTGCAG	1 cut(s)	911
PsuI	RGATCY	5 cut(s)	157, 170, 205, 220, 835
PvuI	CGATCG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	3 cut(s)	288, 410, 818
RsaNI	GTAC	3 cut(s)	287, 409, 817
SaqAI	TTAA	3 cut(s)	99, 615, 849
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	9 cut(s)	94, 157, 170, 205, 220, 269, 340, 455, 835
Sau96I	GGNCC	2 cut(s)	182, 650
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	597, 654, 915
SduI	GDGCHC	3 cut(s)	129, 193, 596
SfaNI	GCATC	2 cut(s)	437, 953
SfcI	CTRYAG	2 cut(s)	397, 907
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	4 cut(s)	98, 233, 784, 894
SmoI	CTYRAG	4 cut(s)	98, 233, 784, 894
Sse9I	AATT	4 cut(s)	249, 382, 587, 791
SseBI	AGGCCT	1 cut(s)	913
SsiI	CCGC	3 cut(s)	292, 337, 505
SspMI	CTAG	2 cut(s)	444, 567
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	3 cut(s)	595, 652, 913
TaaI	ACNGT	2 cut(s)	131, 770
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	5 cut(s)	93, 115, 123, 135, 268
TaqII	GACCGA	1 cut(s)	517
TasI	AATT	4 cut(s)	249, 382, 587, 791
TatI	WGTACW	3 cut(s)	286, 408, 816
TfiI	GAWTC	1 cut(s)	666
Tru1I	TTAA	3 cut(s)	99, 615, 849
Tru9I	TTAA	3 cut(s)	99, 615, 849
TscAI	CASTG	3 cut(s)	184, 281, 911
TseFI	GTSAC	4 cut(s)	354, 599, 902, 922
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	4 cut(s)	354, 599, 902, 922
TspDTI	ATGAA	1 cut(s)	648
TspGWI	ACGGA	2 cut(s)	469, 566
TspRI	CASTG	3 cut(s)	184, 281, 911
Vha464I	CTTAAG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	382, 791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	2 cut(s)	444, 567
ZrmI	AGTACT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.