Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

46613409 .. 46619825

Gene Structure 6417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG342000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGACGTTAACTTTAGTTCACAATTTGGCAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCACTGCAGGCCTGGAGAGGTCAGAAATCAATAAGGAGTCCGGTGATTTTCCAGTGAAGAGACCCACAAAGGAGGAAGAGACCGAGACTGGCAAAGAGCCGGATTGCATTTATGCTGTTATTCCTGGATGGACTCCAATGTTAGCCCAATGTGACATGGTGACAAAAGAAAGATTTGAGGCATCGGAAGTTATAGAAGTGATTTTAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

197

Amino Acids

22.7

Weight (kDa)

5.05

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	4 cut(s)	55, 112, 390, 502
Alw26I	GTCTC	3 cut(s)	433, 452, 458
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	109, 388
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	71, 434, 550
BanII	GRGCYC	1 cut(s)	56
BccI	CCATC	1 cut(s)	501
BciT130I	CCWGG	4 cut(s)	57, 114, 392, 504
BcoDI	GTCTC	3 cut(s)	433, 452, 458
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	384
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	4 cut(s)	57, 114, 392, 504
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	4 cut(s)	57, 114, 392, 504
BmsI	GCATC	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	265, 356
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	433, 452
BsaJI	CCNNGG	2 cut(s)	55, 112
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	431, 472
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	57, 114, 392, 504
BseDI	CCNNGG	2 cut(s)	55, 112
BseGI	GGATG	1 cut(s)	512
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	431, 472
BshFI	GGCC	2 cut(s)	111, 390
BsiSI	CCGG	2 cut(s)	420, 479
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	433, 452, 458
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	111, 390
Bso31I	GGTCTC	2 cut(s)	433, 452
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	111, 390
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	303
BspTNI	GGTCTC	2 cut(s)	433, 452
BsrI	ACTGG	2 cut(s)	431, 472
BssECI	CCNNGG	2 cut(s)	55, 112
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	4 cut(s)	57, 114, 392, 504
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	431, 450
BstC8I	GCNNGC	3 cut(s)	222, 329, 388
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	512
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	3 cut(s)	433, 452, 458
BstMBI	GATC	1 cut(s)	295
BstNI	CCWGG	4 cut(s)	57, 114, 392, 504
BstSCI	CCNGG	4 cut(s)	55, 112, 390, 502
BstSFI	CTRYAG	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	111, 390
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	512
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 438
Cac8I	GCNNGC	3 cut(s)	222, 329, 388
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	98, 358, 535
CviJI	RGCY	8 cut(s)	26, 32, 54, 111, 331, 390, 478, 524
CviKI_1	RGCY	8 cut(s)	26, 32, 54, 111, 331, 390, 478, 524
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	431, 450
EarI	CTCTTC	2 cut(s)	431, 450
Eco147I	AGGCCT	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	2 cut(s)	433, 452
Eco32I	GATATC	2 cut(s)	241, 289
EcoRII	CCWGG	4 cut(s)	55, 112, 390, 502
EcoRV	GATATC	2 cut(s)	241, 289
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	3 cut(s)	101, 361, 538
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	97, 357, 534
FokI	GGATG	1 cut(s)	519
FriOI	GRGCYC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	111, 390
HapII	CCGG	2 cut(s)	420, 479
Hin1II	CATG	3 cut(s)	101, 361, 538
HincII	GTYRAC	2 cut(s)	76, 307
HindII	GTYRAC	2 cut(s)	76, 307
HinfI	GANTC	3 cut(s)	126, 416, 511
HpaI	GTTAAC	2 cut(s)	76, 307
HpaII	CCGG	2 cut(s)	420, 479
HphI	GGTGA	3 cut(s)	71, 434, 550
Hpy166II	GTNNAC	3 cut(s)	76, 307, 317
Hpy188I	TCNGA	3 cut(s)	37, 403, 565
Hpy188III	TCNNGA	4 cut(s)	133, 244, 299, 373
Hpy8I	GTNNAC	3 cut(s)	76, 307, 317
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	102, 303
HpyCH4V	TGCA	5 cut(s)	155, 224, 258, 386, 486
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	102, 303
Hsp92II	CATG	3 cut(s)	101, 361, 538
KspAI	GTTAAC	2 cut(s)	76, 307
Kzo9I	GATC	1 cut(s)	295
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	102, 303
MaeIII	GTNAC	4 cut(s)	59, 379, 530, 538
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	4 cut(s)	28, 121, 448, 467
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	47, 251, 320
MlyI	GAGTC	2 cut(s)	425, 505
MnlI	CCTC	4 cut(s)	240, 390, 445, 550
MseI	TTAA	2 cut(s)	75, 306
MspI	CCGG	2 cut(s)	420, 479
MspR9I	CCNGG	4 cut(s)	57, 114, 392, 504
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	4 cut(s)	57, 114, 392, 504
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	3 cut(s)	101, 361, 538
NmuCI	GTSAC	4 cut(s)	59, 379, 530, 538
PceI	AGGCCT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	502
PleI	GAGTC	2 cut(s)	424, 505
PpsI	GAGTC	2 cut(s)	424, 505
Psp6I	CCWGG	4 cut(s)	55, 112, 390, 502
PspGI	CCWGG	4 cut(s)	55, 112, 390, 502
PspPI	GGNCC	1 cut(s)	110
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	75, 306
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	2 cut(s)	425, 505
ScrFI	CCNGG	4 cut(s)	57, 114, 392, 504
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	8 cut(s)	61, 105, 162, 193, 306, 381, 401, 593
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	244, 371
SmoI	CTYRAG	2 cut(s)	244, 371
Sse9I	AATT	3 cut(s)	47, 251, 320
SseBI	AGGCCT	1 cut(s)	390
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	55, 112, 390, 502
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	105, 306
TaqII	GACCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	47, 251, 320
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	75, 306
Tru9I	TTAA	2 cut(s)	75, 306
TscAI	CASTG	2 cut(s)	388, 438
TseFI	GTSAC	4 cut(s)	59, 379, 530, 538
Tsp45I	GTSAC	4 cut(s)	59, 379, 530, 538
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	388, 438
XapI	RAATTY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.