Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039027.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 516

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

atgggttactccactgttgctccaccctccacctccttcatcaacaacaccaccaagaaggatttgggtctctctgctttctcttccacgtcgctggcttcatttccgagatgcaagagatcactttccaagaaaatctgctccgtcatatcgccacagcaatcggagcggaagccagccactactggctcggtcaagacgggaatgacaatgacggagaagatattggctagggcttctgagaaaccccaattgagcccaggtggcaatgtttgggttaacattgatgttttgatgacccatgacgtgtgtggccctggttcatttggaatcttcaagaaagagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

115

Amino Acids

12.29

Weight (kDa)

9.77

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	2 cut(s)	90, 307
AjnI	CCWGG	2 cut(s)	259, 316
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	261, 318
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	231
BglI	GCCNNNNNGGC	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	261, 318
BmgBI	CACGTC	2 cut(s)	90, 307
BmgT120I	GGNCC	1 cut(s)	314
BmrFI	CCNGG	2 cut(s)	261, 318
BmsI	GCATC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	259, 316
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	261, 318
BseDI	CCNNGG	2 cut(s)	259, 316
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	259, 316
BssMI	GATC	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	261, 318
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	96, 177
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 264
BstNI	CCWGG	2 cut(s)	261, 318
BstSCI	CCNGG	2 cut(s)	259, 316
BstXI	CCANNNNNNTGG	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	315
BtrI	CACGTC	2 cut(s)	90, 307
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	96, 177
Cfr13I	GGNCC	1 cut(s)	314
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	8 cut(s)	98, 175, 179, 189, 230, 236, 258, 315
CviKI_1	RGCY	8 cut(s)	98, 175, 179, 189, 230, 236, 258, 315
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	259, 316
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	1 cut(s)	305
FaiI	YATR	2 cut(s)	149, 303
FatI	CATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	330
HpaI	GTTAAC	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	108, 166, 241
Hpy188III	TCNNGA	2 cut(s)	196, 337
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	46, 52
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	89, 306
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 264
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	89, 306
Hsp92II	CATG	1 cut(s)	305
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	25, 146, 166
LpnPI	CCDG	7 cut(s)	80, 171, 189, 246, 273, 303, 330
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	89, 306
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	121
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	1 cut(s)	119
MboII	GAAGA	3 cut(s)	75, 232, 325
MfeI	CAATTG	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	251
MnlI	CCTC	2 cut(s)	37, 43
MseI	TTAA	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	261, 318
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	2 cut(s)	261, 318
MwoI	GCNNNNNNNGC	2 cut(s)	166, 264
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	259, 316
PspGI	CCWGG	2 cut(s)	259, 316
PspPI	GGNCC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	119
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	261, 318
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	4 cut(s)	35, 92, 265, 309
SfaNI	GCATC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	259, 316
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	92, 309
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	28, 90, 312
TspGWI	ACGGA	2 cut(s)	133, 230
TspRI	CASTG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 308
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.