Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

31871230 .. 31875735

Gene Structure 4506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCGAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCGAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAACGTGCAAACCGTAATATGGATATCTTGAGGGATTTCTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

120

Amino Acids

13.7

Weight (kDa)

5.15

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	112, 169
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	114, 171
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	8
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	114, 171
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	114, 171
BpuEI	CTTGAG	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	112, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	114, 171
BseDI	CCNNGG	2 cut(s)	112, 169
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	298
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	112, 169
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	114, 171
Bst4CI	ACNGT	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	2 cut(s)	114, 171
BstSCI	CCNGG	2 cut(s)	112, 169
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	8 cut(s)	28, 32, 42, 83, 89, 111, 168, 360
CviKI_1	RGCY	8 cut(s)	28, 32, 42, 83, 89, 111, 168, 360
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	113
Eco32I	GATATC	2 cut(s)	298, 346
EcoRII	CCWGG	2 cut(s)	112, 169
EcoRV	GATATC	2 cut(s)	298, 346
EcoT38I	GRGCYC	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	158
FaiI	YATR	6 cut(s)	156, 245, 258, 260, 293, 342
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	183
HpaI	GTTAAC	1 cut(s)	133
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	19, 94
Hpy188III	TCNNGA	3 cut(s)	49, 190, 301
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	159, 277
HpyCH4V	TGCA	3 cut(s)	212, 281, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	159, 277
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	19, 319
LpnPI	CCDG	7 cut(s)	24, 42, 99, 126, 156, 183, 261
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	159, 277
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	354
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	85, 178
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	104
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	114, 171
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	114, 171
MwoI	GCNNNNNNNGC	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	183
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	112, 169
PspGI	CCWGG	2 cut(s)	112, 169
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	317, 349
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	114, 171
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	5 cut(s)	118, 162, 219, 250, 280
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	112, 169
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	162, 280
TaqI	TCGA	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	104
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	165, 288
TspGWI	ACGGA	2 cut(s)	83, 332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.