Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

26234903 .. 26236053

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTAGTAGATGAGACTAAACAACAGTTTAAATCATTTCCTACCATATTGCTCCCTAAGAATCATGTTGTACTAATGAGTTTGTTTTCCTATGGATTTAGATTTCTTACAGAGTACAGATTTGATATCTCAAAACTGGAGCCATTGGTGGCAAAGCCTCATTCTCCAGATAACCGTGCTTTAGCAAGAGAGTGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTAGCTTCAGGAAAAAATGTCAAAGTGCCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCACTTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGATACTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

8.51

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	64 - 156	1.1e-10	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	2 cut(s)	331, 433
AclWI	GGATC	2 cut(s)	235, 379
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	5 cut(s)	72, 116, 235, 321, 353
AfiI	CCNNNNNNNGG	3 cut(s)	368, 374, 440
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	484
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	2 cut(s)	284, 410
AluI	AGCT	2 cut(s)	284, 410
Alw26I	GTCTC	2 cut(s)	8, 459
AlwI	GGATC	2 cut(s)	235, 379
ApeKI	GCWGC	2 cut(s)	263, 266
AspS9I	GGNCC	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	309
BaeI	ACNNNNGTAYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	250, 253
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	8, 459
BfaI	CTAG	2 cut(s)	281, 462
BfuAI	ACCTGC	2 cut(s)	331, 433
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	2 cut(s)	150, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	368, 374, 440
Bse1I	ACTGG	3 cut(s)	141, 241, 362
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	368, 374, 440
BseNI	ACTGG	3 cut(s)	141, 241, 362
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	250, 253
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	3 cut(s)	368, 374, 440
BsmAI	GTCTC	2 cut(s)	8, 459
BsmFI	GGGAC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	227, 371
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	2 cut(s)	331, 433
BspPI	GGATC	2 cut(s)	235, 379
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	141, 241, 362
BssMI	GATC	2 cut(s)	227, 371
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	27, 176, 356
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	392, 448, 478
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	2 cut(s)	230, 374
BstMAI	GTCTC	2 cut(s)	8, 459
BstMBI	GATC	2 cut(s)	227, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	250, 253
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	2 cut(s)	331, 433
Cac8I	GCNNGC	3 cut(s)	392, 448, 478
Cfr13I	GGNCC	1 cut(s)	458
Csp6I	GTAC	5 cut(s)	71, 115, 234, 320, 352
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	2 cut(s)	65, 451
CviJI	RGCY	5 cut(s)	142, 157, 263, 284, 410
CviKI_1	RGCY	5 cut(s)	142, 157, 263, 284, 410
CviQI	GTAC	5 cut(s)	71, 115, 234, 320, 352
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	229, 373
DpnII	GATC	2 cut(s)	227, 371
DraI	TTTAAA	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	2 cut(s)	68, 454
FaiI	YATR	7 cut(s)	47, 66, 93, 222, 260, 452, 474
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	2 cut(s)	64, 450
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	2 cut(s)	281, 462
GluI	GCNGC	2 cut(s)	264, 267
GsuI	CTGGAG	2 cut(s)	150, 158
Hin1II	CATG	2 cut(s)	68, 454
HinfI	GANTC	2 cut(s)	61, 216
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	167, 288
Hpy8I	GTNNAC	1 cut(s)	352
HpyCH4III	ACNGT	3 cut(s)	27, 176, 356
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	195, 428, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	68, 454
Kzo9I	GATC	2 cut(s)	227, 371
LmnI	GCTCC	2 cut(s)	57, 139
Lsp1109I	GCAGC	2 cut(s)	250, 253
MaeI	CTAG	2 cut(s)	281, 462
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	229, 373
MboI	GATC	2 cut(s)	227, 371
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	168, 244, 397
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	2 cut(s)	227, 371
NlaIII	CATG	2 cut(s)	68, 454
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	265, 268
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	458
PsrI	GAACNNNNNNTAC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	5 cut(s)	72, 116, 235, 321, 353
RsaNI	GTAC	5 cut(s)	71, 115, 234, 320, 352
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	264, 267
Sau3AI	GATC	2 cut(s)	227, 371
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	7 cut(s)	286, 325, 339, 351, 379, 412, 427
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	2 cut(s)	281, 462
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	3 cut(s)	27, 176, 356
TaiI	ACGT	1 cut(s)	351
TasI	AATT	1 cut(s)	207
TatI	WGTACW	4 cut(s)	70, 114, 233, 351
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	263, 266
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	458
XspI	CTAG	2 cut(s)	281, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.