Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

36185779 .. 36215536

Gene Structure 29758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG284500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTTGGATTCCTCGGAGTCTCCGAGGATATGAATAGGGATCGGAATTTCTTGGTCAAGACGGGAATGACTATGACTGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGCAGTGGATTTTGGTTTTGAGTGGGGATCGAGTTTCACGTGGGTTTTGCTGGGCAGGCAGTTGGAGAGGTCCGAGTCGCTGCGGAGGACAAGGGTGGTGGTGGAAAGACGGCGGCTTGTGCAGATCATGGACAAGCATATCAGAGATGCTAGAAGCTTGCCAGTCATGAACACAACGAGATCGCCTCTGCCGTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

208

Amino Acids

24.12

Weight (kDa)

7.73

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	508, 538
AclWI	GGATC	3 cut(s)	48, 369, 460
AcsI	RAATTY	2 cut(s)	46, 317
AcvI	CACGTG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	121, 178
AluBI	AGCT	1 cut(s)	582
AluI	AGCT	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	48, 369, 460
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	2 cut(s)	46, 317
AspS9I	GGNCC	2 cut(s)	176, 495
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	492
BceAI	ACGGC	2 cut(s)	551, 601
BciT130I	CCWGG	2 cut(s)	123, 180
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	93, 576, 625
BisI	GCNGC	2 cut(s)	506, 539
BlsI	GCNGC	2 cut(s)	507, 540
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	123, 180
Bme18I	GGWCC	1 cut(s)	495
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	176, 495
BmrFI	CCNGG	2 cut(s)	123, 180
BmsI	GCATC	1 cut(s)	562
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
BpuEI	CTTGAG	2 cut(s)	331, 405
BsaAI	YACGTR	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	13, 24, 121, 178, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	123, 180
BseDI	CCNNGG	5 cut(s)	13, 24, 121, 178, 617
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	69, 93
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	492
BseYI	CCCAGC	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	40, 361, 452, 549, 605
BspACI	CCGC	2 cut(s)	508, 538
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	70, 94
BspHI	TCATGA	1 cut(s)	591
BspPI	GGATC	3 cut(s)	48, 369, 460
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	5 cut(s)	13, 24, 121, 178, 617
BssMI	GATC	5 cut(s)	40, 361, 452, 549, 605
Bst2UI	CCWGG	2 cut(s)	123, 180
Bst4CI	ACNGT	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	288, 482, 584
BstDEI	CTNAG	2 cut(s)	78, 102
BstDSI	CCRYGG	1 cut(s)	617
BstKTI	GATC	5 cut(s)	43, 364, 455, 552, 608
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	40, 361, 452, 549, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 481, 544
BstNI	CCWGG	2 cut(s)	123, 180
BstSCI	CCNGG	2 cut(s)	121, 178
BstV1I	GCAGC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	617
BtrI	CACGTC	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	288, 482, 584
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	176, 495
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	4 cut(s)	164, 407, 553, 592
CviJI	RGCY	7 cut(s)	92, 98, 120, 177, 380, 541, 582
CviKI_1	RGCY	7 cut(s)	92, 98, 120, 177, 380, 541, 582
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	78, 102
DpnI	GATC	5 cut(s)	42, 363, 454, 551, 607
DpnII	GATC	5 cut(s)	40, 361, 452, 549, 605
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	2 cut(s)	307, 355
Eco47I	GGWCC	1 cut(s)	495
Eco72I	CACGTG	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	121, 178
EcoRV	GATATC	2 cut(s)	307, 355
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	4 cut(s)	167, 410, 556, 595
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	163, 406, 552, 591
Fnu4HI	GCNGC	2 cut(s)	506, 539
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	506, 539
FspBI	CTAG	3 cut(s)	93, 576, 625
GluI	GCNGC	2 cut(s)	506, 539
GsaI	CCCAGC	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	167, 410, 556, 595
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	4 cut(s)	9, 18, 192, 500
HpaI	GTTAAC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	6 cut(s)	17, 25, 45, 103, 499, 569
Hpy188III	TCNNGA	5 cut(s)	58, 199, 310, 422, 592
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	168, 464
HpyCH4V	TGCA	4 cut(s)	221, 290, 324, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 481, 544
HpyF3I	CTNAG	2 cut(s)	78, 102
HpySE526I	ACGT	2 cut(s)	168, 464
Hsp92II	CATG	4 cut(s)	167, 410, 556, 595
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	40, 361, 452, 549, 605
LpnPI	CCDG	9 cut(s)	108, 135, 165, 192, 270, 399, 461, 466, 600
Lsp1109I	GCAGC	1 cut(s)	492
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	3 cut(s)	93, 576, 625
MaeII	ACGT	2 cut(s)	168, 464
MaeIII	GTNAC	2 cut(s)	125, 368
MalI	GATC	5 cut(s)	42, 363, 454, 551, 607
MboI	GATC	5 cut(s)	40, 361, 452, 549, 605
MboII	GAAGA	2 cut(s)	94, 187
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	46, 113, 317
MlyI	GAGTC	2 cut(s)	27, 509
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	6 cut(s)	19, 23, 306, 486, 504, 621
MseI	TTAA	2 cut(s)	141, 375
MspR9I	CCNGG	2 cut(s)	123, 180
MunI	CAATTG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	123, 180
MwoI	GCNNNNNNNGC	3 cut(s)	425, 481, 544
NdeII	GATC	5 cut(s)	40, 361, 452, 549, 605
NlaIII	CATG	4 cut(s)	167, 410, 556, 595
NmuCI	GTSAC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 461, 614
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	9, 192
PkrI	GCNGC	2 cut(s)	507, 540
PleI	GAGTC	2 cut(s)	26, 508
PmaCI	CACGTG	1 cut(s)	465
PmlI	CACGTG	1 cut(s)	465
PpsI	GAGTC	2 cut(s)	26, 508
Ppu21I	YACGTR	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	121, 178
PspCI	CACGTG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	2 cut(s)	121, 178
PspPI	GGNCC	2 cut(s)	176, 495
PsrI	GAACNNNNNNTAC	2 cut(s)	326, 358
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	141, 375
SatI	GCNGC	2 cut(s)	506, 539
Sau3AI	GATC	5 cut(s)	40, 361, 452, 549, 605
Sau96I	GGNCC	2 cut(s)	176, 495
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	2 cut(s)	27, 509
ScrFI	CCNGG	2 cut(s)	123, 180
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	7 cut(s)	127, 171, 228, 259, 467, 497, 584
SfaNI	GCATC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	310, 420
SmoI	CTYRAG	2 cut(s)	310, 420
Sse9I	AATT	3 cut(s)	46, 113, 317
SsiI	CCGC	2 cut(s)	508, 538
SspMI	CTAG	3 cut(s)	93, 576, 625
StyD4I	CCNGG	2 cut(s)	121, 178
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	2 cut(s)	171, 467
TaqI	TCGA	1 cut(s)	455
TasI	AATT	3 cut(s)	46, 113, 317
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	2 cut(s)	9, 192
Tru1I	TTAA	2 cut(s)	141, 375
Tru9I	TTAA	2 cut(s)	141, 375
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	47, 174, 608
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	2 cut(s)	46, 317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	3 cut(s)	93, 576, 625
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.