Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

41353267 .. 41356099

Gene Structure 2833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACATTATGCAACATGGTTATTGAAGCTGGGGGTAAAAATGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGGATAAAACGTCTGTACCCTATGAACCTGTGTATAGTGATGATACAGCTAGATTTCTTACAGAGTACAGATTTGATATCTCAAAACTGGAGCCATTGGTGGCAAAGCCTCATTCTCCAGATAACCGTGCTTTAGCAAGAGAGTGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTTGCTTCAGGAAAAAAGGTCAAAGTGCCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCACTTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGATACTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

179

Amino Acids

19.39

Weight (kDa)

5.89

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	1 - 71	2.2e-11	Aconitase family (aconitate hydratase)
Aconitase	PF00330	75 - 167	5.5e-11	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	2 cut(s)	364, 466
AclWI	GGATC	2 cut(s)	268, 412
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	6 cut(s)	77, 99, 149, 268, 354, 386
AfiI	CCNNNNNNNGG	3 cut(s)	401, 407, 473
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	26, 517
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	3 cut(s)	29, 131, 443
AluI	AGCT	3 cut(s)	29, 131, 443
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	268, 412
ApeKI	GCWGC	2 cut(s)	296, 299
AspS9I	GGNCC	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	342
BaeI	ACNNNNGTAYC	3 cut(s)	81, 114, 521
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	283, 286
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	132, 495
BfuAI	ACCTGC	2 cut(s)	364, 466
BisI	GCNGC	2 cut(s)	297, 300
BlsI	GCNGC	2 cut(s)	298, 301
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	2 cut(s)	183, 191
BpuEI	CTTGAG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 407, 473
Bse1I	ACTGG	3 cut(s)	174, 274, 395
BseBI	CCWGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	401, 407, 473
BseNI	ACTGG	3 cut(s)	174, 274, 395
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	283, 286
BseYI	CCCAGC	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	35, 450
BslI	CCNNNNNNNGG	3 cut(s)	401, 407, 473
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	2 cut(s)	35, 450
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	260, 404
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	2 cut(s)	364, 466
BspPI	GGATC	2 cut(s)	268, 412
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	174, 274, 395
BssMI	GATC	2 cut(s)	260, 404
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	209, 389
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	425, 481, 511
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	263, 407
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	2 cut(s)	260, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	283, 286
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	2 cut(s)	364, 466
Cac8I	GCNNGC	3 cut(s)	425, 481, 511
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	6 cut(s)	76, 98, 148, 267, 353, 385
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	16, 484
CviJI	RGCY	6 cut(s)	29, 131, 175, 190, 296, 443
CviKI_1	RGCY	6 cut(s)	29, 131, 175, 190, 296, 443
CviQI	GTAC	6 cut(s)	76, 98, 148, 267, 353, 385
DpnI	GATC	2 cut(s)	262, 406
DpnII	GATC	2 cut(s)	260, 404
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	160
FaeI	CATG	2 cut(s)	19, 487
FaiI	YATR	9 cut(s)	10, 17, 70, 105, 117, 255, 293, 485, 507
FalI	AAGNNNNNCTT	4 cut(s)	297, 329, 454, 486
FaqI	GGGAC	2 cut(s)	35, 450
FatI	CATG	2 cut(s)	15, 483
Fnu4HI	GCNGC	2 cut(s)	297, 300
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	297, 300
FspBI	CTAG	2 cut(s)	132, 495
GluI	GCNGC	2 cut(s)	297, 300
GsaI	CCCAGC	1 cut(s)	33
GsuI	CTGGAG	2 cut(s)	183, 191
Hin1II	CATG	2 cut(s)	19, 487
HinfI	GANTC	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188III	TCNNGA	2 cut(s)	200, 321
Hpy8I	GTNNAC	1 cut(s)	385
HpyCH4III	ACNGT	2 cut(s)	209, 389
HpyCH4IV	ACGT	2 cut(s)	92, 381
HpyCH4V	TGCA	4 cut(s)	12, 228, 461, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	92, 381
Hsp92II	CATG	2 cut(s)	19, 487
Kzo9I	GATC	2 cut(s)	260, 404
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	283, 286
MaeI	CTAG	2 cut(s)	132, 495
MaeII	ACGT	2 cut(s)	92, 381
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	262, 406
MboI	GATC	2 cut(s)	260, 404
MboII	GAAGA	1 cut(s)	383
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	76, 201, 277, 430
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeII	GATC	2 cut(s)	260, 404
NlaIII	CATG	2 cut(s)	19, 487
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	466
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	298, 301
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	491
PsrI	GAACNNNNNNTAC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	6 cut(s)	77, 99, 149, 268, 354, 386
RsaNI	GTAC	6 cut(s)	76, 98, 148, 267, 353, 385
SatI	GCNGC	2 cut(s)	297, 300
Sau3AI	GATC	2 cut(s)	260, 404
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	342
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	240
SspMI	CTAG	2 cut(s)	132, 495
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	209, 389
TaiI	ACGT	2 cut(s)	95, 384
TasI	AATT	1 cut(s)	240
TatI	WGTACW	3 cut(s)	147, 266, 384
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	2 cut(s)	296, 299
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	120, 534
TspRI	CASTG	1 cut(s)	402
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	491
XspI	CTAG	2 cut(s)	132, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.