Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

43937859 .. 43939799

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0355400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGGATGTGGTTGTTTGCAAAACCAACTTGTTTTCATCATGCCACCACCATCATCAACACATCTCTGTGTTTCCAAAGACTTGGAATCAATCATCGTTGTCATTCTCATCAAAGACGGACTTTCTTGGCAAAGGGATTGGGCTTCACACTGCAAGGGATCCGCCGCAATTCCAAGCCCTTAATTCACAGCTTCAGGCGCCGGGTTTTCGAATCGGTAAAGCTCATAGATGGTGGGAAAAGGGGATCCAACCCAACATGAAAGAGGTGACGTCAGCACAAGACCTTGTGGATTCCCTCTCAAACGCAGGAGATGAGCTTGTCGTCCTTGATTTCTTCTCTCCCGGTTGTGGTGGCTGCAAAGCTCTTCATCCCAAGATATGTCAGTTTGCAGAGATGAACCCAGATGTTCAGTTTCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTCAATGTTCATGTCCTACCCTTCTTCCGCTTCTACAGAGGAGCTCATGGTCGTGTATGCAGCTTTAGCTGTACAAACGCCACGATCAAAAAATTTAAAGATGCGTTAGCCAAGCACAAGCCAGAGCGCTGCAGCCTTGGGCCAACTAAGGGGTTGGAGGAGAAAGAGCTCCTCGCACTTTCTGCTAATAAAGATCTTAAATTCACCTACACCCCTAAACAAGTTGAATTTGTGCCTGCAAAAGCATCTGAGGAAATGATTGTGGCAGCACCATCTCGTTCAAACTCAGAATCTCTTCCTCTGCCTTCAACAACATTGAAGTCTGGTCAAATCTCGGAGGAGAGAAACATGGTCAGTGCTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

275

Amino Acids

30.57

Weight (kDa)

8.8

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	100 - 169	2e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	199
AciI	CCGC	4 cut(s)	5, 164, 167, 487
AclWI	GGATC	4 cut(s)	155, 168, 241, 254
AcsI	RAATTY	3 cut(s)	551, 659, 686
AcuI	CTGAAG	2 cut(s)	179, 404
AcyI	GRCGYC	2 cut(s)	200, 272
AfaI	GTAC	1 cut(s)	532
AfeI	AGCGCT	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	350, 608
AgsI	TTSAA	4 cut(s)	686, 741, 768, 778
AluBI	AGCT	8 cut(s)	193, 224, 319, 365, 503, 522, 528, 628
AluI	AGCT	8 cut(s)	193, 224, 319, 365, 503, 522, 528, 628
Alw21I	GWGCWC	2 cut(s)	505, 630
AlwI	GGATC	4 cut(s)	155, 168, 241, 254
Aor51HI	AGCGCT	1 cut(s)	587
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	5 cut(s)	357, 519, 588, 591, 725
ApoI	RAATTY	3 cut(s)	551, 659, 686
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	202, 588
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	2 cut(s)	204, 345
AsuHPI	GGTGA	3 cut(s)	280, 436, 655
AsuII	TTCGAA	1 cut(s)	211
BamHI	GGATCC	2 cut(s)	160, 246
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	505, 630
Bbv12I	GWGCWC	2 cut(s)	505, 630
BbvI	GCAGC	5 cut(s)	344, 531, 575, 603, 737
BccI	CCATC	3 cut(s)	60, 225, 739
BcnI	CCSGG	2 cut(s)	204, 345
BfmI	CTRYAG	2 cut(s)	493, 589
BfoI	RGCGCY	2 cut(s)	203, 589
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	6 cut(s)	167, 358, 520, 589, 592, 726
BlsI	GCNGC	6 cut(s)	168, 359, 521, 590, 593, 727
Bme1390I	CCNGG	2 cut(s)	204, 345
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	3 cut(s)	162, 201, 248
BmrFI	CCNGG	2 cut(s)	204, 345
BmsI	GCATC	2 cut(s)	550, 713
Bpu14I	TTCGAA	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	204, 345
BsaHI	GRCGYC	2 cut(s)	200, 272
BsaJI	CCNNGG	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 608
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	2 cut(s)	13, 370
BseLI	CCNNNNNNNGG	2 cut(s)	350, 608
BseMII	CTCAG	2 cut(s)	699, 759
BseRI	GAGGAG	4 cut(s)	513, 620, 632, 812
BseXI	GCAGC	5 cut(s)	344, 531, 575, 603, 737
BseYI	CCCAGC	1 cut(s)	818
BshFI	GGCC	1 cut(s)	601
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	505, 630
BsiSI	CCGG	2 cut(s)	203, 345
BslI	CCNNNNNNNGG	2 cut(s)	350, 608
BsnI	GGCC	1 cut(s)	601
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	505, 630
Bsp1407I	TGTACA	1 cut(s)	530
Bsp143I	GATC	4 cut(s)	160, 246, 543, 652
BspACI	CCGC	4 cut(s)	5, 164, 167, 487
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	700, 758
BspLI	GGNNCC	3 cut(s)	162, 201, 248
BspMAI	CTGCAG	1 cut(s)	593
BspPI	GGATC	4 cut(s)	155, 168, 241, 254
BspQI	GCTCTTC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	4 cut(s)	160, 246, 543, 652
BssNI	GRCGYC	2 cut(s)	200, 272
BssT1I	CCWWGG	1 cut(s)	595
Bst6I	CTCTTC	2 cut(s)	372, 759
BstACI	GRCGYC	2 cut(s)	200, 272
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	530
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	3 cut(s)	606, 708, 745
BstF5I	GGATG	2 cut(s)	13, 370
BstH2I	RGCGCY	2 cut(s)	203, 589
BstHHI	GCGC	2 cut(s)	202, 588
BstKTI	GATC	4 cut(s)	163, 249, 546, 655
BstMBI	GATC	4 cut(s)	160, 246, 543, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 525, 641
BstSCI	CCNGG	2 cut(s)	202, 343
BstSFI	CTRYAG	2 cut(s)	493, 589
BstV1I	GCAGC	5 cut(s)	344, 531, 575, 603, 737
BstX2I	RGATCY	3 cut(s)	160, 246, 652
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	3 cut(s)	160, 246, 652
BsuRI	GGCC	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	13, 370
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 820
Cac8I	GCNNGC	1 cut(s)	696
CfoI	GCGC	2 cut(s)	202, 588
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	6 cut(s)	42, 259, 448, 470, 506, 808
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	606, 708, 745
DinI	GGCGCC	1 cut(s)	201
DpnI	GATC	4 cut(s)	162, 248, 545, 654
DpnII	GATC	4 cut(s)	160, 246, 543, 652
DraI	TTTAAA	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	372, 759
EarI	CTCTTC	2 cut(s)	372, 759
EciI	GGCGGA	2 cut(s)	20, 153
Ecl136II	GAGCTC	2 cut(s)	503, 628
Eco130I	CCWWGG	1 cut(s)	595
Eco24I	GRGCYC	2 cut(s)	505, 630
Eco47III	AGCGCT	1 cut(s)	587
Eco53kI	GAGCTC	2 cut(s)	503, 628
Eco57I	CTGAAG	2 cut(s)	179, 404
EcoICRI	GAGCTC	2 cut(s)	503, 628
EcoT14I	CCWWGG	1 cut(s)	595
EcoT38I	GRGCYC	2 cut(s)	505, 630
EgeI	GGCGCC	1 cut(s)	201
EheI	GGCGCC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	6 cut(s)	45, 262, 451, 473, 509, 811
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	6 cut(s)	41, 258, 447, 469, 505, 807
Fnu4HI	GCNGC	6 cut(s)	167, 358, 520, 589, 592, 726
FokI	GGATG	2 cut(s)	20, 357
FriOI	GRGCYC	2 cut(s)	505, 630
Fsp4HI	GCNGC	6 cut(s)	167, 358, 520, 589, 592, 726
GlaI	GCGC	2 cut(s)	201, 587
GluI	GCNGC	6 cut(s)	167, 358, 520, 589, 592, 726
GsaI	CCCAGC	1 cut(s)	822
HaeII	RGCGCY	2 cut(s)	203, 589
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	2 cut(s)	203, 345
HhaI	GCGC	2 cut(s)	202, 588
Hin1I	GRCGYC	2 cut(s)	200, 272
Hin1II	CATG	6 cut(s)	45, 262, 451, 473, 509, 811
Hin6I	GCGC	2 cut(s)	200, 586
HinP1I	GCGC	2 cut(s)	200, 586
HinfI	GANTC	4 cut(s)	88, 213, 293, 749
HpaII	CCGG	2 cut(s)	203, 345
HphI	GGTGA	3 cut(s)	280, 436, 655
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	709, 748, 796
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	490, 774
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	7 cut(s)	21, 155, 360, 392, 519, 591, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 525, 641
HpyF3I	CTNAG	3 cut(s)	606, 708, 745
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	2 cut(s)	200, 272
Hsp92II	CATG	6 cut(s)	45, 262, 451, 473, 509, 811
HspAI	GCGC	2 cut(s)	200, 586
KasI	GGCGCC	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	160, 246, 543, 652
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	2 cut(s)	500, 633
Lsp1109I	GCAGC	5 cut(s)	344, 531, 575, 603, 737
LweI	GCATC	2 cut(s)	550, 713
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	4 cut(s)	162, 248, 545, 654
MboI	GATC	4 cut(s)	160, 246, 543, 652
MboII	GAAGA	5 cut(s)	328, 359, 410, 475, 746
MflI	RGATCY	3 cut(s)	160, 246, 652
MhlI	GDGCHC	2 cut(s)	505, 630
MluCI	AATT	5 cut(s)	170, 184, 551, 659, 686
Mly113I	GGCGCC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	274, 594
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	3 cut(s)	183, 555, 657
MslI	CAYNNNNRTG	2 cut(s)	68, 510
MspI	CCGG	2 cut(s)	203, 345
MspR9I	CCNGG	2 cut(s)	204, 345
MwoI	GCNNNNNNNGC	3 cut(s)	199, 525, 641
NarI	GGCGCC	1 cut(s)	200
NciI	CCSGG	2 cut(s)	204, 345
NdeII	GATC	4 cut(s)	160, 246, 543, 652
NlaIII	CATG	6 cut(s)	45, 262, 451, 473, 509, 811
NlaIV	GGNNCC	3 cut(s)	162, 201, 248
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	4 cut(s)	88, 213, 293, 749
PkrI	GCNGC	6 cut(s)	168, 359, 521, 590, 593, 727
PluTI	GGCGCC	1 cut(s)	203
Psp124BI	GAGCTC	2 cut(s)	505, 630
PspFI	CCCAGC	1 cut(s)	818
PspN4I	GGNNCC	3 cut(s)	162, 201, 248
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	593
PsuI	RGATCY	3 cut(s)	160, 246, 652
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	2 cut(s)	68, 510
SacI	GAGCTC	2 cut(s)	505, 630
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	183, 555, 657
SatI	GCNGC	6 cut(s)	167, 358, 520, 589, 592, 726
Sau3AI	GATC	4 cut(s)	160, 246, 543, 652
Sau96I	GGNCC	1 cut(s)	599
ScrFI	CCNGG	2 cut(s)	204, 345
SduI	GDGCHC	2 cut(s)	505, 630
SfaNI	GCATC	2 cut(s)	550, 713
SfcI	CTRYAG	2 cut(s)	493, 589
SfoI	GGCGCC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	211
SmiMI	CAYNNNNRTG	2 cut(s)	68, 510
Sse9I	AATT	5 cut(s)	170, 184, 551, 659, 686
SsiI	CCGC	4 cut(s)	5, 164, 167, 487
SspDI	GGCGCC	1 cut(s)	199
SstI	GAGCTC	2 cut(s)	505, 630
StyD4I	CCNGG	2 cut(s)	202, 343
StyI	CCWWGG	1 cut(s)	595
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	211
TasI	AATT	5 cut(s)	170, 184, 551, 659, 686
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	4 cut(s)	88, 213, 293, 749
Tru1I	TTAA	3 cut(s)	183, 555, 657
Tru9I	TTAA	3 cut(s)	183, 555, 657
TscAI	CASTG	2 cut(s)	157, 820
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	357, 519, 588, 591, 725
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	27, 275, 359, 413, 458
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	157, 820
XapI	RAATTY	3 cut(s)	551, 659, 686
XmnI	GAANNNNTTC	1 cut(s)	753
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.