Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008351.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

79060 .. 80803

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008351.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgggttactccactgttgctccaccctccacctccttcatcaacaacaccaccaagaaggatttgggtctctctgctttctcttccacgtcgccggcttcatttccgagatgcaagagatcgatctccaagaaaatctgctccgtcatggcgccacagcaatcggagcggaagccagccactaccggctcggtcaagacgggaatgacgatgaccaagaagatattggctagggcttctgagaaaccccaattgagcccaggtgacaatgtttgggttaacattgatgttttgatgacccatgacgtgtgtggccctggttcatttggaatcttcaagaaagagtttggacagaatgcaaaggtttgggacagagaaaagattgtaatcatacctgaccattatatatttactactgatgagcgtgcaaaccgtaatgtggatatcttgagagatttctgcacggagcagaacatcaagtacttctatgatatcaaggatcttggtaactttaaggctaacccagattacaagggtgtatgccatgttgctcttgctcaagaaggtcattgcaggcctggagaggtgctgctaggtacagattctcacacctgcaccgctggagcttttggacaatttgctactggaatcgggaatactgatgcaggtttcgtattgggcactgggaagcttttgctcaaggtgcctccaactctgagatttgtgctggatggtgaaatgcctgactatttgcttgccaaagacttgattttacaagtaagccgtcgcataaattgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

266

Amino Acids

29.18

Weight (kDa)

8.95

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	2 cut(s)	620, 656
AccB1I	GGYRCC	2 cut(s)	151, 703
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	2 cut(s)	169, 618
AclWI	GGATC	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	2 cut(s)	482, 598
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	2 cut(s)	90, 307
AjnI	CCWGG	3 cut(s)	259, 316, 577
AluBI	AGCT	2 cut(s)	626, 691
AluI	AGCT	2 cut(s)	626, 691
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	2 cut(s)	313, 575
ApeKI	GCWGC	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	275, 746
BaeGI	GKGCMC	1 cut(s)	683
BanI	GGYRCC	2 cut(s)	151, 703
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	1 cut(s)	725
BceAI	ACGGC	1 cut(s)	768
BciT130I	CCWGG	3 cut(s)	261, 318, 579
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	231, 593
BfoI	RGCGCY	1 cut(s)	155
BfuAI	ACCTGC	2 cut(s)	620, 656
BisI	GCNGC	1 cut(s)	590
BlsI	GCNGC	1 cut(s)	591
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	3 cut(s)	261, 318, 579
BmgBI	CACGTC	2 cut(s)	90, 307
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	153, 705
BmrFI	CCNGG	3 cut(s)	261, 318, 579
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	101, 652
BmuI	ACTGGG	1 cut(s)	693
BpmI	CTGGAG	2 cut(s)	600, 642
BpuEI	CTTGAG	3 cut(s)	469, 543, 683
Bsa29I	ATCGAT	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	259, 316
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	2 cut(s)	94, 185
Bse1I	ACTGG	2 cut(s)	649, 688
Bse3DI	GCAATG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	3 cut(s)	261, 318, 579
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	259, 316
BseGI	GGATG	1 cut(s)	736
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	231, 707
BseNI	ACTGG	2 cut(s)	649, 688
BseSI	GKGCMC	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	576
BsgI	GTGCAG	2 cut(s)	445, 598
BshFI	GGCC	2 cut(s)	315, 577
BshNI	GGYRCC	2 cut(s)	151, 703
BshVI	ATCGAT	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	95, 186
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	315, 577
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	260, 683
Bsp143I	GATC	3 cut(s)	119, 123, 499
BspACI	CCGC	2 cut(s)	169, 618
BspANI	GGCC	2 cut(s)	315, 577
BspCNI	CTCAG	2 cut(s)	232, 708
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	153, 705
BspMI	ACCTGC	2 cut(s)	620, 656
BspPI	GGATC	1 cut(s)	507
BspT107I	GGYRCC	2 cut(s)	151, 703
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	2 cut(s)	94, 185
BsrI	ACTGG	2 cut(s)	649, 688
BssAI	RCCGGY	2 cut(s)	94, 185
BssECI	CCNNGG	2 cut(s)	259, 316
BssMI	GATC	3 cut(s)	119, 123, 499
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	261, 318, 579
Bst4CI	ACNGT	2 cut(s)	16, 434
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	5 cut(s)	96, 177, 426, 575, 756
BstDEI	CTNAG	2 cut(s)	240, 716
BstF5I	GGATG	1 cut(s)	736
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	122, 126, 502
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	119, 123, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 703
BstNI	CCWGG	3 cut(s)	261, 318, 579
BstSCI	CCNGG	3 cut(s)	259, 316, 577
BstSLI	GKGCMC	1 cut(s)	683
BstV1I	GCAGC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	315, 577
BsuTUI	ATCGAT	1 cut(s)	122
BtrI	CACGTC	2 cut(s)	90, 307
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	2 cut(s)	12, 681
BveI	ACCTGC	2 cut(s)	620, 656
Cac8I	GCNNGC	5 cut(s)	96, 177, 426, 575, 756
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	94, 185
Cfr13I	GGNCC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	481, 597
CviAII	CATG	3 cut(s)	148, 302, 545
CviQI	GTAC	2 cut(s)	481, 597
DdeI	CTNAG	2 cut(s)	240, 716
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	3 cut(s)	121, 125, 501
DpnII	GATC	3 cut(s)	119, 123, 499
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	74
Eco32I	GATATC	2 cut(s)	445, 493
EcoRII	CCWGG	3 cut(s)	259, 316, 577
EcoRV	GATATC	2 cut(s)	445, 493
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	3 cut(s)	151, 305, 548
FaiI	YATR	9 cut(s)	149, 303, 392, 405, 407, 489, 541, 546, 791
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	147, 301, 544
Fnu4HI	GCNGC	1 cut(s)	590
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	590
FspBI	CTAG	2 cut(s)	231, 593
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	590
GsuI	CTGGAG	2 cut(s)	600, 642
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	315, 577
HapII	CCGG	2 cut(s)	95, 186
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	151, 305, 548
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	3 cut(s)	330, 602, 648
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	95, 186
HphI	GGTGA	2 cut(s)	275, 746
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	108, 166, 241, 717
Hpy188III	TCNNGA	5 cut(s)	196, 337, 448, 560, 652
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	94, 789
HpyAV	CCTTC	3 cut(s)	46, 52, 557
HpyCH4III	ACNGT	2 cut(s)	16, 434
HpyCH4IV	ACGT	2 cut(s)	89, 306
HpyCH4V	TGCA	7 cut(s)	114, 359, 428, 462, 573, 615, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 703
HpyF3I	CTNAG	2 cut(s)	240, 716
HpySE526I	ACGT	2 cut(s)	89, 306
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	151, 305, 548
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	119, 123, 499
LmnI	GCTCC	5 cut(s)	25, 146, 166, 466, 623
Lsp1109I	GCAGC	1 cut(s)	576
LweI	GCATC	2 cut(s)	101, 652
MaeI	CTAG	2 cut(s)	231, 593
MaeII	ACGT	2 cut(s)	89, 306
MaeIII	GTNAC	3 cut(s)	5, 263, 506
MalI	GATC	3 cut(s)	121, 125, 501
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	3 cut(s)	119, 123, 499
MboII	GAAGA	3 cut(s)	75, 232, 325
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	260, 683
MluCI	AATT	3 cut(s)	251, 635, 793
Mly113I	GGCGCC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	4 cut(s)	37, 43, 577, 717
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	3 cut(s)	279, 513, 799
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	95, 186
MspR9I	CCNGG	3 cut(s)	261, 318, 579
MunI	CAATTG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	3 cut(s)	261, 318, 579
MwoI	GCNNNNNNNGC	2 cut(s)	166, 703
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	152
NdeII	GATC	3 cut(s)	119, 123, 499
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	3 cut(s)	151, 305, 548
NlaIV	GGNNCC	2 cut(s)	153, 705
NmuCI	GTSAC	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	330, 602, 648
PkrI	GCNGC	1 cut(s)	591
PluTI	GGCGCC	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	259, 316, 577
PspGI	CCWGG	3 cut(s)	259, 316, 577
PspN4I	GGNNCC	2 cut(s)	153, 705
PspPI	GGNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	2 cut(s)	482, 598
RsaNI	GTAC	2 cut(s)	481, 597
SaqAI	TTAA	3 cut(s)	279, 513, 799
SatI	GCNGC	1 cut(s)	590
Sau3AI	GATC	3 cut(s)	119, 123, 499
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	3 cut(s)	261, 318, 579
SduI	GDGCHC	2 cut(s)	260, 683
SfaNI	GCATC	2 cut(s)	101, 652
SfoI	GGCGCC	1 cut(s)	153
SmlI	CTYRAG	3 cut(s)	448, 558, 698
SmoI	CTYRAG	3 cut(s)	448, 558, 698
Sse9I	AATT	3 cut(s)	251, 635, 793
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	2 cut(s)	169, 618
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	231, 593
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	3 cut(s)	259, 316, 577
TaaI	ACNGT	2 cut(s)	16, 434
TaiI	ACGT	2 cut(s)	92, 309
TaqI	TCGA	1 cut(s)	122
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	3 cut(s)	251, 635, 793
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	330, 602, 648
Tru1I	TTAA	3 cut(s)	279, 513, 799
Tru9I	TTAA	3 cut(s)	279, 513, 799
TscAI	CASTG	2 cut(s)	19, 688
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	28, 90, 312
TspGWI	ACGGA	2 cut(s)	133, 479
TspRI	CASTG	2 cut(s)	19, 688
XcmI	CCANNNNNNNNNTGG	3 cut(s)	61, 223, 308
XspI	CTAG	2 cut(s)	231, 593
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.