Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

43481954 .. 43483936

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG323300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACAGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGGAACCCGAATTGAGCCCAGGTGACAATAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCATGCAAACCGTAATATGGATATCTTGAGGGATTTCTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGACGTTAACTTTAGTTCACAATTTGGCAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGACATAATGTTTTAGGAGGTTATTGTTTGGAACAAACAGCCGCAAAAGCTTATGATATAACAAAACTTAAGCACGTCAGTAGACAAAAATATGTTACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

157

Amino Acids

18.02

Weight (kDa)

7.76

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	2 cut(s)	22, 411
AclWI	GGATC	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	437
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	112, 363
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	114, 365
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	114, 365
BmgBI	CACGTC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	6, 99
BmrFI	CCNGG	2 cut(s)	114, 365
BpmI	CTGGAG	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	238, 329
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	114, 365
BseDI	CCNNGG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	22, 411
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	6, 99
BspPI	GGATC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	114, 365
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	30, 195, 302, 361
BstDEI	CTNAG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 416
BstNI	CCWGG	2 cut(s)	114, 365
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	112, 363
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	445
Cac8I	GCNNGC	4 cut(s)	30, 195, 302, 361
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	194, 331
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	113
Eco32I	GATATC	2 cut(s)	214, 262
EcoRII	CCWGG	2 cut(s)	112, 363
EcoRV	GATATC	2 cut(s)	214, 262
EcoT38I	GRGCYC	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	2 cut(s)	197, 334
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	193, 330
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	197, 334
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	417
HpaI	GTTAAC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	280, 290, 452
Hpy188I	TCNGA	2 cut(s)	19, 94
Hpy188III	TCNNGA	4 cut(s)	49, 217, 272, 346
Hpy8I	GTNNAC	3 cut(s)	280, 290, 452
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	276, 444
HpyCH4V	TGCA	4 cut(s)	128, 197, 231, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 416
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	276, 444
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	197, 334
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	19, 235
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	276, 444
MaeIII	GTNAC	2 cut(s)	116, 463
MalI	GATC	1 cut(s)	270
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	2 cut(s)	104, 293
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	3 cut(s)	88, 213, 380
MseI	TTAA	2 cut(s)	279, 438
MspCI	CTTAAG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	114, 365
MvaI	CCWGG	2 cut(s)	114, 365
MwoI	GCNNNNNNNGC	2 cut(s)	19, 416
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	197, 334
NlaIV	GGNNCC	2 cut(s)	6, 99
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	112, 363
PspGI	CCWGG	2 cut(s)	112, 363
PspN4I	GGNNCC	2 cut(s)	6, 99
PsrI	GAACNNNNNNTAC	2 cut(s)	233, 265
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	279, 438
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	114, 365
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	8 cut(s)	118, 135, 166, 279, 354, 391, 421, 447
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	3 cut(s)	217, 344, 437
SmoI	CTYRAG	3 cut(s)	217, 344, 437
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	2 cut(s)	104, 293
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	22, 411
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	112, 363
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	279, 447
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	104, 293
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	279, 438
Tru9I	TTAA	2 cut(s)	279, 438
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	2 cut(s)	83, 248
Vha464I	CTTAAG	1 cut(s)	437
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.