Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

40062020 .. 40096735

Gene Structure 34716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG223600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGACGCAGAAGAGCTAGGGCTAGCGATGCTTTTCTTCGACTTTAAGCGGTCCCACGGTCACAACTCACATGAGGGACCAAAGCTAACAGAGCACATGAAGTACTGTGTGGATCATCTTGAAGAGATAAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATAGTGAGAAGGTTCTTGATCGTGGTGAGAAGATTGAGCAGTTGGTGGATAAGACTGATAACCCAGAGGAAGTGGGTATTGAGAAATGGAACAAGCTCGAGAACAAGTATGTATTCGTGTATTTGAACCCGAAAAAGGGTTCGAAGAAGGTTCTAGTGAAGTGTCTTGTGATTGATGAAATATTGAGTGTAGATACTTTGGCTGATGGGGCATCTCAGAACGTTCATTGTGAATTTAAGGAAACTGGTAGTTCAGACTTGACTAATATATCAGTAAATGAGCCTGGGCATGGTGCTGGATCTCCAGGGCCTATCAAATACCATGCATTCTATGAGATGGAAGAGAGGATGACATTATGCAACATGGTTATTGAAGCTGGGGGTAAAAATGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGGATAAAACGTCTGTACCCTATGAACCTGTGTATAGTGATGATACAGCTAGATTTCTTACAGAGTACAGATTTGATATCTCAAAACTGGAGCCATTGGTGGCAAAGCCTCATTCTCCAGATAACCGTGCTTTAGCAAGAGAGTGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTTGCTTCAGGAAAAAAGGTCAAAGTGCCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCACTTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGATACTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

357

Amino Acids

39.47

Weight (kDa)

5.58

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	45 - 83	1.6e-10	Synaptobrevin
PI31_Prot_N	PF11566	70 - 141	5.2e-06	PI31 proteasome regulator N-terminal
Aconitase	PF00330	174 - 248	1.9e-13	Aconitase family (aconitate hydratase)
Aconitase	PF00330	253 - 345	2.2e-10	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1000
Acc36I	ACCTGC	2 cut(s)	898, 1000
AciI	CCGC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	4 cut(s)	120, 493, 802, 946
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	837
AfaI	GTAC	7 cut(s)	104, 611, 633, 683, 802, 888, 920
AfiI	CCNNNNNNNGG	6 cut(s)	322, 323, 476, 935, 941, 1007
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	4 cut(s)	122, 313, 560, 1051
AjiI	CACGTC	1 cut(s)	916
AjnI	CCWGG	3 cut(s)	469, 490, 934
AluBI	AGCT	7 cut(s)	16, 85, 136, 283, 563, 665, 977
AluI	AGCT	7 cut(s)	16, 85, 136, 283, 563, 665, 977
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	1026
AlwI	GGATC	4 cut(s)	120, 493, 802, 946
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	830, 833
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	4 cut(s)	51, 77, 494, 1025
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	51, 77, 1025
BaeGI	GKGCMC	1 cut(s)	876
BaeI	ACNNNNGTAYC	3 cut(s)	615, 648, 1055
BbsI	GAAGAC	1 cut(s)	917
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	817, 820
BccI	CCATC	4 cut(s)	175, 386, 517, 904
BciT130I	CCWGG	3 cut(s)	471, 492, 936
BcoDI	GTCTC	1 cut(s)	1026
BfaI	CTAG	5 cut(s)	17, 23, 341, 666, 1029
BfuAI	ACCTGC	2 cut(s)	898, 1000
BisI	GCNGC	2 cut(s)	831, 834
BlsI	GCNGC	2 cut(s)	832, 835
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	471, 492, 936
Bme18I	GGWCC	3 cut(s)	51, 77, 1025
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	916
BmgT120I	GGNCC	4 cut(s)	51, 77, 494, 1025
BmiI	GGNNCC	3 cut(s)	53, 78, 708
BmrFI	CCNGG	3 cut(s)	471, 492, 936
BmsI	GCATC	2 cut(s)	18, 407
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	917
BpmI	CTGGAG	3 cut(s)	474, 717, 725
Bpu14I	TTCGAA	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	635
BsaJI	CCNNGG	3 cut(s)	55, 470, 491
Bsc4I	CCNNNNNNNGG	6 cut(s)	322, 323, 476, 935, 941, 1007
Bse1I	ACTGG	4 cut(s)	436, 708, 808, 929
BseBI	CCWGG	3 cut(s)	471, 492, 936
BseDI	CCNNGG	3 cut(s)	55, 470, 491
BseGI	GGATG	2 cut(s)	540, 915
BseLI	CCNNNNNNNGG	6 cut(s)	322, 323, 476, 935, 941, 1007
BseMII	CTCAG	2 cut(s)	153, 416
BseNI	ACTGG	4 cut(s)	436, 708, 808, 929
BseSI	GKGCMC	1 cut(s)	876
BseXI	GCAGC	2 cut(s)	817, 820
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	284
BslFI	GGGAC	4 cut(s)	37, 90, 569, 984
BslI	CCNNNNNNNGG	6 cut(s)	322, 323, 476, 935, 941, 1007
BsmAI	GTCTC	1 cut(s)	1026
BsmFI	GGGAC	4 cut(s)	37, 90, 569, 984
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	96, 876
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	5 cut(s)	112, 205, 485, 794, 938
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	2 cut(s)	154, 415
BspLI	GGNNCC	3 cut(s)	53, 78, 708
BspMI	ACCTGC	2 cut(s)	898, 1000
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	4 cut(s)	120, 493, 802, 946
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	4 cut(s)	436, 708, 808, 929
BssECI	CCNNGG	3 cut(s)	55, 470, 491
BssMI	GATC	5 cut(s)	112, 205, 485, 794, 938
Bst2UI	CCWGG	3 cut(s)	471, 492, 936
Bst4CI	ACNGT	4 cut(s)	59, 107, 743, 923
Bst6I	CTCTTC	3 cut(s)	6, 117, 522
BstAPI	GCANNNNNTGC	1 cut(s)	954
BstAUI	TGTACA	1 cut(s)	918
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	5 cut(s)	24, 138, 959, 1015, 1045
BstDEI	CTNAG	2 cut(s)	162, 402
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	540, 915
BstKTI	GATC	5 cut(s)	115, 208, 488, 797, 941
BstMAI	GTCTC	1 cut(s)	1026
BstMBI	GATC	5 cut(s)	112, 205, 485, 794, 938
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 91, 395, 954
BstNI	CCWGG	3 cut(s)	471, 492, 936
BstSCI	CCNGG	3 cut(s)	469, 490, 934
BstSLI	GKGCMC	1 cut(s)	876
BstV1I	GCAGC	2 cut(s)	817, 820
BstV2I	GAAGAC	1 cut(s)	917
BstX2I	RGATCY	2 cut(s)	485, 794
BstYI	RGATCY	2 cut(s)	485, 794
BsuRI	GGCC	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	916
BtsCI	GGATG	2 cut(s)	540, 915
BtsIMutI	CAGTG	1 cut(s)	936
BveI	ACCTGC	2 cut(s)	898, 1000
Cac8I	GCNNGC	5 cut(s)	24, 138, 959, 1015, 1045
Cfr13I	GGNCC	4 cut(s)	51, 77, 494, 1025
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	7 cut(s)	103, 610, 632, 682, 801, 887, 919
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	6 cut(s)	71, 97, 476, 509, 550, 1018
CviQI	GTAC	7 cut(s)	103, 610, 632, 682, 801, 887, 919
DdeI	CTNAG	2 cut(s)	162, 402
DpnI	GATC	5 cut(s)	114, 207, 487, 796, 940
DpnII	GATC	5 cut(s)	112, 205, 485, 794, 938
Eam1104I	CTCTTC	3 cut(s)	6, 117, 522
EarI	CTCTTC	3 cut(s)	6, 117, 522
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	3 cut(s)	51, 77, 1025
Eco57I	CTGAAG	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	469, 490, 934
EcoRV	GATATC	1 cut(s)	694
EcoT22I	ATGCAT	1 cut(s)	514
FaeI	CATG	6 cut(s)	74, 100, 479, 512, 553, 1021
FalI	AAGNNNNNCTT	4 cut(s)	831, 863, 988, 1020
FaqI	GGGAC	4 cut(s)	37, 90, 569, 984
FatI	CATG	6 cut(s)	70, 96, 475, 508, 549, 1017
Fnu4HI	GCNGC	2 cut(s)	831, 834
FokI	GGATG	2 cut(s)	547, 922
Fsp4HI	GCNGC	2 cut(s)	831, 834
FspBI	CTAG	5 cut(s)	17, 23, 341, 666, 1029
GluI	GCNGC	2 cut(s)	831, 834
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	3 cut(s)	474, 717, 725
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	74, 100, 479, 512, 553, 1021
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	783
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	2 cut(s)	405, 442
Hpy188III	TCNNGA	5 cut(s)	119, 203, 286, 734, 855
Hpy8I	GTNNAC	1 cut(s)	919
HpyAV	CCTTC	3 cut(s)	142, 190, 328
HpyCH4III	ACNGT	4 cut(s)	59, 107, 743, 923
HpyCH4IV	ACGT	4 cut(s)	156, 408, 626, 915
HpyCH4V	TGCA	6 cut(s)	140, 512, 546, 762, 995, 1017
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 91, 395, 954
HpyF3I	CTNAG	2 cut(s)	162, 402
HpySE526I	ACGT	4 cut(s)	156, 408, 626, 915
Hsp92II	CATG	6 cut(s)	74, 100, 479, 512, 553, 1021
Kzo9I	GATC	5 cut(s)	112, 205, 485, 794, 938
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	2 cut(s)	817, 820
LweI	GCATC	2 cut(s)	18, 407
MaeI	CTAG	5 cut(s)	17, 23, 341, 666, 1029
MaeII	ACGT	4 cut(s)	156, 408, 626, 915
MaeIII	GTNAC	3 cut(s)	59, 157, 983
MalI	GATC	5 cut(s)	114, 207, 487, 796, 940
MboI	GATC	5 cut(s)	112, 205, 485, 794, 938
MboII	GAAGA	7 cut(s)	23, 28, 134, 229, 343, 539, 917
MflI	RGATCY	2 cut(s)	485, 794
MhlI	GDGCHC	2 cut(s)	96, 876
MluCI	AATT	2 cut(s)	419, 774
MlyI	GAGTC	1 cut(s)	792
MnlI	CCTC	8 cut(s)	67, 157, 247, 525, 610, 735, 811, 964
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	2 cut(s)	45, 423
MspR9I	CCNGG	3 cut(s)	471, 492, 936
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	3 cut(s)	471, 492, 936
MwoI	GCNNNNNNNGC	4 cut(s)	28, 91, 395, 954
NdeII	GATC	5 cut(s)	112, 205, 485, 794, 938
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	74, 100, 479, 512, 553, 1021
NlaIV	GGNNCC	3 cut(s)	53, 78, 708
NmuCI	GTSAC	2 cut(s)	59, 983
NsiI	ATGCAT	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	1000
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	512
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	2 cut(s)	832, 835
PleI	GAGTC	1 cut(s)	791
PpsI	GAGTC	1 cut(s)	791
Psp1406I	AACGTT	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	469, 490, 934
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	3 cut(s)	469, 490, 934
PspN4I	GGNNCC	3 cut(s)	53, 78, 708
PspPI	GGNCC	4 cut(s)	51, 77, 494, 1025
PsrI	GAACNNNNNNTAC	1 cut(s)	1047
PsuI	RGATCY	2 cut(s)	485, 794
PsyI	GACNNNGTC	1 cut(s)	782
RsaI	GTAC	7 cut(s)	104, 611, 633, 683, 802, 888, 920
RsaNI	GTAC	7 cut(s)	103, 610, 632, 682, 801, 887, 919
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	45, 423
SatI	GCNGC	2 cut(s)	831, 834
Sau3AI	GATC	5 cut(s)	112, 205, 485, 794, 938
Sau96I	GGNCC	4 cut(s)	51, 77, 494, 1025
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	1 cut(s)	792
ScrFI	CCNGG	3 cut(s)	471, 492, 936
SduI	GDGCHC	2 cut(s)	96, 876
SfaNI	GCATC	2 cut(s)	18, 407
Sfr274I	CTCGAG	1 cut(s)	284
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	3 cut(s)	51, 77, 1025
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	284, 614
SmoI	CTYRAG	2 cut(s)	284, 614
Sse9I	AATT	2 cut(s)	419, 774
SsiI	CCGC	1 cut(s)	49
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	5 cut(s)	17, 23, 341, 666, 1029
StyD4I	CCNGG	3 cut(s)	469, 490, 934
TaaI	ACNGT	4 cut(s)	59, 107, 743, 923
TaiI	ACGT	4 cut(s)	159, 411, 629, 918
TaqI	TCGA	3 cut(s)	39, 285, 329
TasI	AATT	2 cut(s)	419, 774
TatI	WGTACW	4 cut(s)	102, 681, 800, 918
Tru1I	TTAA	2 cut(s)	45, 423
Tru9I	TTAA	2 cut(s)	45, 423
TscAI	CASTG	1 cut(s)	936
TseFI	GTSAC	2 cut(s)	59, 983
TseI	GCWGC	2 cut(s)	830, 833
Tsp45I	GTSAC	2 cut(s)	59, 983
TspDTI	ATGAA	5 cut(s)	113, 378, 401, 654, 1068
TspRI	CASTG	1 cut(s)	936
Tth111I	GACNNNGTC	1 cut(s)	782
VpaK11BI	GGWCC	3 cut(s)	51, 77, 1025
XapI	RAATTY	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	284
XspI	CTAG	5 cut(s)	17, 23, 341, 666, 1029
ZrmI	AGTACT	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.