Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

44247533 .. 44249263

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG334300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATATCTTGAGGGATTTCTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAAGTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTGCTGCTAGGTACAGATTCTCACACCTGCACCGCTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGAATACTGATGCAAGTTTCGTATTGGGCACTGGGAAGCTTTTGCTCAAGGTTTGCGGATGTTGCATTTTTGTTTTCATTCTCTCCAATCTCATGTCTGATAGATTTATGCAAATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

111

Amino Acids

12.19

Weight (kDa)

6.24

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	3 - 89	2.6e-15	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	2 cut(s)	180, 270
AclWI	GGATC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	44, 160
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	188, 253
AluI	AGCT	2 cut(s)	188, 253
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	2 cut(s)	162, 204
BpuEI	CTTGAG	3 cut(s)	31, 105, 245
Bse1I	ACTGG	2 cut(s)	211, 250
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	211, 250
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	138
BsgI	GTGCAG	2 cut(s)	7, 160
BshFI	GGCC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	180, 270
BspANI	GGCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	211, 250
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	278
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	43, 159
CviAII	CATG	3 cut(s)	107, 307, 333
CviJI	RGCY	4 cut(s)	80, 139, 188, 253
CviKI_1	RGCY	4 cut(s)	80, 139, 188, 253
CviQI	GTAC	2 cut(s)	43, 159
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	139
Eco32I	GATATC	2 cut(s)	7, 55
EcoRII	CCWGG	1 cut(s)	139
EcoRV	GATATC	2 cut(s)	7, 55
FaeI	CATG	3 cut(s)	110, 310, 336
FaiI	YATR	6 cut(s)	51, 103, 108, 308, 323, 334
FatI	CATG	3 cut(s)	106, 306, 332
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	152
GsuI	CTGGAG	2 cut(s)	162, 204
HaeIII	GGCC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	110, 310, 336
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	164, 210
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	10, 122, 214
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	6 cut(s)	24, 135, 177, 227, 279, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	110, 310, 336
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	28, 185
LpnPI	CCDG	8 cut(s)	99, 121, 126, 153, 168, 187, 192, 231
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	155
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	2 cut(s)	6, 139
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	110, 310, 336
PaqCI	CACCTGC	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	164, 210
PkrI	GCNGC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PsrI	GAACNNNNNNTAC	2 cut(s)	26, 58
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	44, 160
RsaNI	GTAC	2 cut(s)	43, 159
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	7 cut(s)	130, 150, 160, 176, 190, 255, 267
SfaNI	GCATC	1 cut(s)	214
SmlI	CTYRAG	3 cut(s)	10, 120, 260
SmoI	CTYRAG	3 cut(s)	10, 120, 260
Sse9I	AATT	1 cut(s)	197
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	2 cut(s)	180, 270
SspMI	CTAG	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	139
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	164, 210
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	250
XspI	CTAG	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.