Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

36966442 .. 36976639

Gene Structure 10198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAATACCATGTGCGTAGGAATCCATATAGCTTTGACAGGTGTAAAACGGCTCAATGTAACTATACACAGATGCAAGAGATCACTCTCCAAGAAAATCTGCTCCGTCATATCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGAATGACTATGACTGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGACGTTAAGGGACCGTCAGATGTATCCAACACTAGTATGCAGAAGCCAAAGCATAAGCGCACAAATGACACTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

207

Amino Acids

23.25

Weight (kDa)

9.14

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	3 cut(s)	220, 277, 538
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AlwI	GGATC	1 cut(s)	468
AoxI	GGCC	2 cut(s)	274, 536
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	275, 557
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	3 cut(s)	222, 279, 540
BciVI	GTATCC	1 cut(s)	580
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	2 cut(s)	192, 579
BfuI	GTATCC	1 cut(s)	580
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	3 cut(s)	222, 279, 540
Bme18I	GGWCC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	275, 557
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	3 cut(s)	222, 279, 540
BmsI	GCATC	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	430, 504
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	220, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	3 cut(s)	222, 279, 540
BseDI	CCNNGG	2 cut(s)	220, 277
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	168, 192
BseNI	ACTGG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	276, 538
BslFI	GGGAC	2 cut(s)	344, 570
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmFI	GGGAC	2 cut(s)	344, 570
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	276, 538
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	80, 460
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	276, 538
BspCNI	CTCAG	2 cut(s)	169, 193
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	220, 277
BssMI	GATC	2 cut(s)	80, 460
Bst2UI	CCWGG	3 cut(s)	222, 279, 540
Bst4CI	ACNGT	3 cut(s)	395, 561, 619
BstC8I	GCNNGC	3 cut(s)	138, 387, 536
BstDEI	CTNAG	2 cut(s)	177, 201
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	2 cut(s)	83, 463
BstMBI	GATC	2 cut(s)	80, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	3 cut(s)	222, 279, 540
BstSCI	CCNGG	3 cut(s)	220, 277, 538
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	276, 538
BtrI	CACGTC	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	3 cut(s)	138, 387, 536
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	2 cut(s)	275, 557
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	3 cut(s)	10, 263, 506
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	177, 201
DpnI	GATC	2 cut(s)	82, 462
DpnII	GATC	2 cut(s)	80, 460
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	221
Eco32I	GATATC	2 cut(s)	406, 454
Eco47I	GGWCC	1 cut(s)	557
EcoRII	CCWGG	3 cut(s)	220, 277, 538
EcoRV	GATATC	2 cut(s)	406, 454
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	3 cut(s)	13, 266, 509
FaqI	GGGAC	2 cut(s)	344, 570
FatI	CATG	3 cut(s)	9, 262, 505
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	192, 579
GlaI	GCGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	276, 538
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	3 cut(s)	13, 266, 509
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	21, 291
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	127, 202, 565
Hpy188III	TCNNGA	4 cut(s)	157, 298, 409, 521
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	3 cut(s)	395, 561, 619
HpyCH4IV	ACGT	2 cut(s)	267, 549
HpyCH4V	TGCA	6 cut(s)	75, 320, 389, 423, 534, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	177, 201
HpySE526I	ACGT	2 cut(s)	267, 549
Hsp92II	CATG	3 cut(s)	13, 266, 509
HspAI	GCGC	1 cut(s)	604
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	80, 460
LmnI	GCTCC	2 cut(s)	107, 127
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	192, 579
MaeII	ACGT	2 cut(s)	267, 549
MaeIII	GTNAC	3 cut(s)	58, 224, 467
MalI	GATC	2 cut(s)	82, 462
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	2 cut(s)	80, 460
MboII	GAAGA	2 cut(s)	193, 286
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	2 cut(s)	212, 416
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	2 cut(s)	405, 538
MseI	TTAA	3 cut(s)	240, 474, 552
MslI	CAYNNNNRTG	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	222, 279, 540
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	3 cut(s)	222, 279, 540
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	80, 460
NlaIII	CATG	3 cut(s)	13, 266, 509
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	538
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	21, 291
PflFI	GACNNNGTC	1 cut(s)	617
Psp6I	CCWGG	3 cut(s)	220, 277, 538
PspGI	CCWGG	3 cut(s)	220, 277, 538
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	275, 557
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
PsuI	RGATCY	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	617
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	240, 474, 552
Sau3AI	GATC	2 cut(s)	80, 460
Sau96I	GGNCC	2 cut(s)	275, 557
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	3 cut(s)	222, 279, 540
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	8 cut(s)	34, 43, 226, 270, 327, 358, 529, 552
SfaNI	GCATC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	409, 519
SmoI	CTYRAG	2 cut(s)	409, 519
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	2 cut(s)	212, 416
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	192, 579
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	220, 277, 538
TaaI	ACNGT	3 cut(s)	395, 561, 619
TaiI	ACGT	2 cut(s)	270, 552
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	212, 416
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	21, 291
Tru1I	TTAA	3 cut(s)	240, 474, 552
Tru9I	TTAA	3 cut(s)	240, 474, 552
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	17, 273
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	622
Tth111I	GACNNNGTC	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	2 cut(s)	192, 579
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.