Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001669.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

242440 .. 242819

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001669.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ctggcttcatttccgagatgcaagagatcactttccaagaaaatctgctccgtcatatcgccacagcaatcggagcggaagccagccactactggctcggtcaagacgggaatgacaatgacggagaagatattggctagggcttctgagaaaccccaattgagcccaggtgacaatgtttgggttaacattgatgttttgatgacccatgacgtgtgtggccctggttcatttggaatcttcaagaaagagtttggacagaatgcaaaggtagcttcatttttcagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

96

Amino Acids

10.44

Weight (kDa)

9.72

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	76
AciI	CCGC	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	244
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	166, 223
AluBI	AGCT	2 cut(s)	275, 288
AluI	AGCT	2 cut(s)	275, 288
AoxI	GGCC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	168, 225
BfaI	CTAG	1 cut(s)	138
Bme1390I	CCNGG	2 cut(s)	168, 225
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	168, 225
BmsI	GCATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	166, 223
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	168, 225
BseDI	CCNNGG	2 cut(s)	166, 223
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	166, 223
BssMI	GATC	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	168, 225
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 272
BstNI	CCWGG	2 cut(s)	168, 225
BstSCI	CCNGG	2 cut(s)	166, 223
BsuRI	GGCC	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	166, 223
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	1 cut(s)	212
FaiI	YATR	2 cut(s)	56, 210
FatI	CATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	237
HpaI	GTTAAC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	15, 73, 148
Hpy188III	TCNNGA	2 cut(s)	103, 244
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	21, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 272
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	212
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	53, 73
LpnPI	CCDG	6 cut(s)	78, 96, 153, 180, 210, 237
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	28
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	139, 232
MfeI	CAATTG	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	158
MseI	TTAA	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	168, 225
MunI	CAATTG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	2 cut(s)	168, 225
MwoI	GCNNNNNNNGC	2 cut(s)	73, 272
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	166, 223
PspGI	CCWGG	2 cut(s)	166, 223
PspPI	GGNCC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	168, 225
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	172, 216, 273, 277, 290
SfaNI	GCATC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	166, 223
TaiI	ACGT	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	219, 267
TspGWI	ACGGA	2 cut(s)	40, 137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.