Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

13846120 .. 13850701

Gene Structure 4582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGAAGTTACAAACTTGGATCTCTCAGGGTTGAACTCTTATATAAACATGAACACTCGTGAAATACATGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGAAATCAACAAGGAGTCCGGTGATTTTCCAGTGAAGAGACCCACAGAGGAGGAAGAGACCGAGACTGGCAAAGAGCCGGATTGCATTTATGCTGTTATTCCTGGATGGACTCCAATGATATCTTGCAAATGGTTGCTGAGCAATTCAAACAATAAAATTTTGTCGCAATTCATTCAGGAACTTAAAATTGGGAAAGTCTGCGTATTCAATTTTAGGTTGAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

223

Amino Acids

25.63

Weight (kDa)

5.51

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	30, 387
AcsI	RAATTY	2 cut(s)	335, 600
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflIII	ACRYGT	2 cut(s)	70, 186
AgsI	TTSAA	5 cut(s)	37, 217, 591, 652, 664
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	139, 196, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
Alw26I	GTCTC	3 cut(s)	475, 494, 500
AlwI	GGATC	2 cut(s)	30, 387
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	335, 600
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	155, 476
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	60
BccI	CCATC	1 cut(s)	543
BciT130I	CCWGG	3 cut(s)	141, 198, 546
BcoDI	GTCTC	3 cut(s)	475, 494, 500
BfaI	CTAG	1 cut(s)	111
BlpI	GCTNAGC	1 cut(s)	581
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	3 cut(s)	141, 198, 546
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	3 cut(s)	141, 198, 546
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	349, 423
BsaBI	GATNNNNATC	1 cut(s)	266
BsaI	GGTCTC	2 cut(s)	475, 494
BsaJI	CCNNGG	2 cut(s)	139, 196
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	473, 514
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	141, 198, 546
BseDI	CCNNGG	2 cut(s)	139, 196
BseGI	GGATG	1 cut(s)	554
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	42, 111, 572
BseNI	ACTGG	2 cut(s)	473, 514
BseRI	GAGGAG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	462, 521
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	3 cut(s)	475, 494, 500
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	2 cut(s)	475, 494
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	22, 379
Bsp1720I	GCTNAGC	1 cut(s)	581
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	3 cut(s)	41, 112, 573
BspPI	GGATC	2 cut(s)	30, 387
BspTNI	GGTCTC	2 cut(s)	475, 494
BsrI	ACTGG	2 cut(s)	473, 514
BssECI	CCNNGG	2 cut(s)	139, 196
BssMI	GATC	2 cut(s)	22, 379
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	3 cut(s)	141, 198, 546
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	3 cut(s)	473, 492, 659
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	28, 120, 581
BstF5I	GGATG	1 cut(s)	554
BstKTI	GATC	2 cut(s)	25, 382
BstMAI	GTCTC	3 cut(s)	475, 494, 500
BstMBI	GATC	2 cut(s)	22, 379
BstNI	CCWGG	3 cut(s)	141, 198, 546
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	139, 196, 544
BstX2I	RGATCY	2 cut(s)	22, 379
BstYI	RGATCY	2 cut(s)	22, 379
BsuRI	GGCC	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	554
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	52, 71, 182, 425
CviJI	RGCY	6 cut(s)	110, 116, 138, 195, 398, 520
CviKI_1	RGCY	6 cut(s)	110, 116, 138, 195, 398, 520
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	28, 120, 581
DpnI	GATC	2 cut(s)	24, 381
DpnII	GATC	2 cut(s)	22, 379
Eam1104I	CTCTTC	3 cut(s)	473, 492, 659
EarI	CTCTTC	3 cut(s)	473, 492, 659
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	2 cut(s)	475, 494
Eco32I	GATATC	3 cut(s)	325, 373, 564
EcoRII	CCWGG	3 cut(s)	139, 196, 544
EcoRV	GATATC	3 cut(s)	325, 373, 564
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	4 cut(s)	55, 74, 185, 428
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	51, 70, 181, 424
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	462, 521
Hin1II	CATG	4 cut(s)	55, 74, 185, 428
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	210, 458, 553
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	462, 521
HphI	GGTGA	2 cut(s)	155, 476
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	6 cut(s)	62, 76, 217, 328, 440, 620
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	239, 308, 342, 528, 570
HpyF3I	CTNAG	3 cut(s)	28, 120, 581
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	55, 74, 185, 428
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	22, 379
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	10, 143, 386
MalI	GATC	2 cut(s)	24, 381
MboI	GATC	2 cut(s)	22, 379
MboII	GAAGA	6 cut(s)	17, 112, 205, 455, 490, 509
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	22, 379
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	7 cut(s)	131, 335, 586, 600, 611, 630, 652
MlyI	GAGTC	2 cut(s)	467, 547
MnlI	CCTC	3 cut(s)	324, 484, 487
MseI	TTAA	3 cut(s)	159, 393, 627
MspI	CCGG	2 cut(s)	462, 521
MspR9I	CCNGG	3 cut(s)	141, 198, 546
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	141, 198, 546
NdeII	GATC	2 cut(s)	22, 379
NlaIII	CATG	4 cut(s)	55, 74, 185, 428
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	210
PfoI	TCCNGGA	1 cut(s)	544
PleI	GAGTC	2 cut(s)	466, 547
PpsI	GAGTC	2 cut(s)	466, 547
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	3 cut(s)	139, 196, 544
PspGI	CCWGG	3 cut(s)	139, 196, 544
PspPI	GGNCC	1 cut(s)	194
PsrI	GAACNNNNNNTAC	2 cut(s)	344, 376
PsuI	RGATCY	2 cut(s)	22, 379
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	159, 393, 627
Sau3AI	GATC	2 cut(s)	22, 379
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	2 cut(s)	467, 547
ScrFI	CCNGG	3 cut(s)	141, 198, 546
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	5 cut(s)	145, 189, 246, 277, 662
SmlI	CTYRAG	2 cut(s)	328, 438
SmoI	CTYRAG	2 cut(s)	328, 438
Sse9I	AATT	7 cut(s)	131, 335, 586, 600, 611, 630, 652
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	139, 196, 544
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	7 cut(s)	131, 335, 586, 600, 611, 630, 652
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	3 cut(s)	159, 393, 627
Tru9I	TTAA	3 cut(s)	159, 393, 627
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	68, 192, 604
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	480
XapI	RAATTY	2 cut(s)	335, 600
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.