Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

36067394 .. 36078490

Gene Structure 11097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTTGGATTCCTCGGAGTCTCCGAGGATATGAATAGGGATCGGAATTTCTTGGTCAAGACGGGAATGACTATGACTGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGCTGGATTCTTAAATTTAACAGATTCTTCTGTGAAGGTCATAGCTGAAACTTGTTCTGGGTTATATAATTCAAGTAATTCATTCCATGAGCTGTTTACTTGCAAGAACTTAAAATTGGGAAAGTCTGCGTATTCAATTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

6.09

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	48, 369
AcsI	RAATTY	3 cut(s)	46, 317, 439
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	199, 498, 561
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	121, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	3 cut(s)	428, 470, 517
AluI	AGCT	3 cut(s)	428, 470, 517
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	48, 369
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	3 cut(s)	46, 317, 439
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	123, 180
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	93
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	123, 180
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	123, 180
BpuEI	CTTGAG	2 cut(s)	331, 405
BsaBI	GATNNNNATC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	13, 24, 121, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	123, 180
BseDI	CCNNGG	4 cut(s)	13, 24, 121, 178
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	69, 93
BshFI	GGCC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	40, 361
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	70, 94
BspPI	GGATC	2 cut(s)	48, 369
BssECI	CCNNGG	4 cut(s)	13, 24, 121, 178
BssMI	GATC	2 cut(s)	40, 361
Bst2UI	CCWGG	2 cut(s)	123, 180
Bst4CI	ACNGT	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	78, 102
BstKTI	GATC	2 cut(s)	43, 364
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	40, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	2 cut(s)	123, 180
BstSCI	CCNGG	2 cut(s)	121, 178
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	3 cut(s)	164, 407, 512
CviJI	RGCY	8 cut(s)	92, 98, 120, 177, 380, 428, 470, 517
CviKI_1	RGCY	8 cut(s)	92, 98, 120, 177, 380, 428, 470, 517
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	78, 102
DpnI	GATC	2 cut(s)	42, 363
DpnII	GATC	2 cut(s)	40, 361
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	2 cut(s)	307, 355
EcoRII	CCWGG	2 cut(s)	121, 178
EcoRV	GATATC	2 cut(s)	307, 355
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	167, 410, 515
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	163, 406, 511
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	167, 410, 515
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	5 cut(s)	9, 18, 192, 432, 449
HpaI	GTTAAC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	142, 522
Hpy188I	TCNGA	4 cut(s)	17, 25, 45, 103
Hpy188III	TCNNGA	4 cut(s)	58, 199, 310, 422
Hpy8I	GTNNAC	2 cut(s)	142, 522
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	221, 290, 324, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	2 cut(s)	78, 102
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	167, 410, 515
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	40, 361
LpnPI	CCDG	8 cut(s)	108, 135, 165, 192, 270, 399, 414, 468
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	125, 368
MalI	GATC	2 cut(s)	42, 363
MboI	GATC	2 cut(s)	40, 361
MboII	GAAGA	3 cut(s)	94, 187, 444
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	8 cut(s)	46, 113, 317, 439, 493, 502, 539, 561
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	19, 23, 306
MseI	TTAA	5 cut(s)	141, 375, 437, 443, 536
MspR9I	CCNGG	2 cut(s)	123, 180
MunI	CAATTG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	123, 180
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	2 cut(s)	40, 361
NlaIII	CATG	3 cut(s)	167, 410, 515
NmuCI	GTSAC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	4 cut(s)	9, 192, 432, 449
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	121, 178
PspGI	CCWGG	2 cut(s)	121, 178
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	326, 358
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	5 cut(s)	141, 375, 437, 443, 536
Sau3AI	GATC	2 cut(s)	40, 361
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	123, 180
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	127, 171, 228, 259, 430, 465, 472, 519, 571
SmlI	CTYRAG	2 cut(s)	310, 420
SmoI	CTYRAG	2 cut(s)	310, 420
Sse9I	AATT	8 cut(s)	46, 113, 317, 439, 493, 502, 539, 561
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	121, 178
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	171
TasI	AATT	8 cut(s)	46, 113, 317, 439, 493, 502, 539, 561
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	9, 192, 432, 449
Tru1I	TTAA	5 cut(s)	141, 375, 437, 443, 536
Tru9I	TTAA	5 cut(s)	141, 375, 437, 443, 536
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	47, 174, 495
XapI	RAATTY	3 cut(s)	46, 317, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.