Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

13399102 .. 13401737

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAGAAGTTACAAACTTGGATCTCTCAGGGTTGAACTCTTATATAAACATGAACACTCGTGAAATACATGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGTTCAGAAATCAACAAGGAGTCCGGTGATTTTCCAGTGAAGAGACCCACAGAGGAGGAAGAGACCGAGACTGGCAAAGAGCCGGATTGCATTTATGCTGTTATTCCTGGATGGACTCCAATGTTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

4.99

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflIII	ACRYGT	2 cut(s)	70, 186
AgsI	TTSAA	2 cut(s)	37, 217
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	4 cut(s)	139, 196, 420, 532
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
Alw26I	GTCTC	3 cut(s)	463, 482, 488
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	193, 418
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	155, 464
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	60
BccI	CCATC	1 cut(s)	531
BciT130I	CCWGG	4 cut(s)	141, 198, 422, 534
BcoDI	GTCTC	3 cut(s)	463, 482, 488
BfaI	CTAG	1 cut(s)	111
Bme1390I	CCNGG	4 cut(s)	141, 198, 422, 534
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	4 cut(s)	141, 198, 422, 534
BpmI	CTGGAG	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	349, 386
BsaBI	GATNNNNATC	1 cut(s)	266
BsaI	GGTCTC	2 cut(s)	463, 482
BsaJI	CCNNGG	2 cut(s)	139, 196
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	461, 502
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	4 cut(s)	141, 198, 422, 534
BseDI	CCNNGG	2 cut(s)	139, 196
BseGI	GGATG	1 cut(s)	542
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	42, 111
BseNI	ACTGG	2 cut(s)	461, 502
BseRI	GAGGAG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	195, 420
BsiSI	CCGG	2 cut(s)	450, 509
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	3 cut(s)	463, 482, 488
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	195, 420
Bso31I	GGTCTC	2 cut(s)	463, 482
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	195, 420
BspCNI	CTCAG	2 cut(s)	41, 112
BspPI	GGATC	1 cut(s)	30
BspTNI	GGTCTC	2 cut(s)	463, 482
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	461, 502
BssECI	CCNNGG	2 cut(s)	139, 196
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	4 cut(s)	141, 198, 422, 534
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	461, 480
BstC8I	GCNNGC	2 cut(s)	306, 418
BstDEI	CTNAG	2 cut(s)	28, 120
BstF5I	GGATG	1 cut(s)	542
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	3 cut(s)	463, 482, 488
BstMBI	GATC	1 cut(s)	22
BstNI	CCWGG	4 cut(s)	141, 198, 422, 534
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	139, 196, 420, 532
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	195, 420
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	306, 418
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	4 cut(s)	52, 71, 182, 388
CviJI	RGCY	8 cut(s)	110, 116, 138, 195, 361, 420, 508, 554
CviKI_1	RGCY	8 cut(s)	110, 116, 138, 195, 361, 420, 508, 554
DdeI	CTNAG	2 cut(s)	28, 120
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	461, 480
EarI	CTCTTC	2 cut(s)	461, 480
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	2 cut(s)	463, 482
Eco32I	GATATC	1 cut(s)	325
EcoRII	CCWGG	4 cut(s)	139, 196, 420, 532
EcoRV	GATATC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	4 cut(s)	55, 74, 185, 391
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	51, 70, 181, 387
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	195, 420
HapII	CCGG	2 cut(s)	450, 509
Hin1II	CATG	4 cut(s)	55, 74, 185, 391
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	210, 446, 541
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	450, 509
HphI	GGTGA	2 cut(s)	155, 464
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	121, 433
Hpy188III	TCNNGA	5 cut(s)	62, 76, 217, 328, 403
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	239, 308, 342, 416, 516
HpyF3I	CTNAG	2 cut(s)	28, 120
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	55, 74, 185, 391
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	10, 143
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	5 cut(s)	17, 112, 205, 478, 497
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	2 cut(s)	131, 335
MlyI	GAGTC	2 cut(s)	455, 535
MnlI	CCTC	3 cut(s)	324, 472, 475
MseI	TTAA	1 cut(s)	159
MspI	CCGG	2 cut(s)	450, 509
MspR9I	CCNGG	4 cut(s)	141, 198, 422, 534
MunI	CAATTG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	4 cut(s)	141, 198, 422, 534
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	4 cut(s)	55, 74, 185, 391
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	420
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	210
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	2 cut(s)	454, 535
PpsI	GAGTC	2 cut(s)	454, 535
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	4 cut(s)	139, 196, 420, 532
PspGI	CCWGG	4 cut(s)	139, 196, 420, 532
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	455, 535
ScrFI	CCNGG	4 cut(s)	141, 198, 422, 534
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	145, 189, 246, 277, 363, 411
SmlI	CTYRAG	2 cut(s)	328, 401
SmoI	CTYRAG	2 cut(s)	328, 401
Sse9I	AATT	2 cut(s)	131, 335
SseBI	AGGCCT	1 cut(s)	420
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	139, 196, 420, 532
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	2 cut(s)	131, 335
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	68, 192
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.