Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

5698477 .. 5707689

Gene Structure 9213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG076000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCCACTTCTGGGAATCAGTTGGTGCCAGCGAATCCATCCACTGAGGGTGGTGCGACAACTGGTGGTGGTGCGGCGACTGGTGGCGGTGCCACTACTGGTGGAGGTGAGACGGCTTCCAGCCAGGCGAAGACAGCAAAGAGAAAGAGGGAGGATTCGAAATATCAAGACAAAACCTCAACTCAGGCACCGTCTACAAGTACTGCTGCGAAGCCTCCAAAATCTGCAAAGTTTACTTCTAAAGCAAGTTGTTTGACATCGCCGGATTTGGGTCAATACAACTTTGAAAGCAACTTTGAAAGCAAGGATTTGGGTCTCTCTGCTTTCTCTTCCACGTCGCTGGCTTCATTTCCGAGATGCAAGAGATCACTCTCCAAGAAAATCTGCTCGGTCATATCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGACGTTAACTTTAGTTCACAATTTGGCAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTCAGAAATCAACAAGGAGTCCGGTGATTTTCCAGTGAAGAGACCCACAGAGGAGGAAGAGACCGAGACTGGCAAAGAGCCGGATTGCATTTATGCTGTTATTCCTGGATGGACTCCAATGTTAGCCCAATGTGACCCGGTTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

332

Amino Acids

36.09

Weight (kDa)

8.35

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	25, 89, 187
AccBSI	CCGCTC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	3 cut(s)	74, 87, 415
AclWI	GGATC	1 cut(s)	753
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	701
AfaI	GTAC	2 cut(s)	202, 728
AfiI	CCNNNNNNNGG	3 cut(s)	12, 269, 685
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	287, 299, 583
AjiI	CACGTC	2 cut(s)	336, 553
AjnI	CCWGG	5 cut(s)	123, 505, 562, 840, 952
Alw26I	GTCTC	5 cut(s)	104, 320, 883, 902, 908
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	3 cut(s)	3, 559, 838
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	701
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	3 cut(s)	119, 521, 884
AsuII	TTCGAA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	3 cut(s)	25, 89, 187
BanII	GRGCYC	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	46, 951
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	5 cut(s)	125, 507, 564, 842, 954
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	5 cut(s)	104, 320, 883, 902, 908
BfaI	CTAG	1 cut(s)	477
BisI	GCNGC	2 cut(s)	75, 207
BlsI	GCNGC	2 cut(s)	76, 208
BmcAI	AGTACT	2 cut(s)	202, 728
Bme1390I	CCNGG	6 cut(s)	125, 507, 564, 842, 954, 986
BmgBI	CACGTC	2 cut(s)	336, 553
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	27, 91, 189
BmrFI	CCNGG	6 cut(s)	125, 507, 564, 842, 954, 986
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	863
Bpu14I	TTCGAA	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	715, 806
BpuMI	CCSGG	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	632
BsaI	GGTCTC	3 cut(s)	320, 883, 902
BsaJI	CCNNGG	2 cut(s)	505, 562
BsaWI	WCCGGW	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 269, 685
Bse1I	ACTGG	6 cut(s)	67, 85, 103, 436, 881, 922
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	632
BseBI	CCWGG	5 cut(s)	125, 507, 564, 842, 954
BseDI	CCNNGG	2 cut(s)	505, 562
BseGI	GGATG	2 cut(s)	38, 962
BseJI	GATNNNNATC	1 cut(s)	632
BseLI	CCNNNNNNNGG	3 cut(s)	12, 269, 685
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	3 cut(s)	36, 197, 477
BseNI	ACTGG	6 cut(s)	67, 85, 103, 436, 881, 922
BseRI	GAGGAG	1 cut(s)	914
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	3 cut(s)	5, 561, 840
BshNI	GGYRCC	3 cut(s)	25, 89, 187
BsiSI	CCGG	4 cut(s)	263, 870, 929, 986
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	12, 269, 685
BsmAI	GTCTC	5 cut(s)	104, 320, 883, 902, 908
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	5, 561, 840
Bso31I	GGTCTC	3 cut(s)	320, 883, 902
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	2 cut(s)	365, 745
BspACI	CCGC	3 cut(s)	74, 87, 415
BspANI	GGCC	3 cut(s)	5, 561, 840
BspCNI	CTCAG	3 cut(s)	37, 196, 478
BspLI	GGNNCC	3 cut(s)	27, 91, 189
BspPI	GGATC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	3 cut(s)	25, 89, 187
BspTNI	GGTCTC	3 cut(s)	320, 883, 902
BsrBI	CCGCTC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	6 cut(s)	67, 85, 103, 436, 881, 922
BssECI	CCNNGG	2 cut(s)	505, 562
BssMI	GATC	2 cut(s)	365, 745
Bst2UI	CCWGG	5 cut(s)	125, 507, 564, 842, 954
Bst4CI	ACNGT	2 cut(s)	192, 680
Bst6I	CTCTTC	3 cut(s)	334, 881, 900
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	6 cut(s)	30, 342, 423, 672, 779, 838
BstDEI	CTNAG	3 cut(s)	45, 183, 486
BstF5I	GGATG	2 cut(s)	38, 962
BstKTI	GATC	2 cut(s)	368, 748
BstMAI	GTCTC	5 cut(s)	104, 320, 883, 902, 908
BstMBI	GATC	2 cut(s)	365, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 412
BstNI	CCWGG	5 cut(s)	125, 507, 564, 842, 954
BstSCI	CCNGG	6 cut(s)	123, 505, 562, 840, 952, 984
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	5, 561, 840
BtgZI	GCGATG	1 cut(s)	243
BtrI	CACGTC	2 cut(s)	336, 553
BtsCI	GGATG	2 cut(s)	38, 962
BtsIMutI	CAGTG	2 cut(s)	42, 888
Cac8I	GCNNGC	6 cut(s)	30, 342, 423, 672, 779, 838
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	201, 727
CviAII	CATG	2 cut(s)	548, 808
CviQI	GTAC	2 cut(s)	201, 727
DdeI	CTNAG	3 cut(s)	45, 183, 486
DpnI	GATC	2 cut(s)	367, 747
DpnII	GATC	2 cut(s)	365, 745
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	334, 881, 900
EarI	CTCTTC	3 cut(s)	334, 881, 900
Eco147I	AGGCCT	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	3 cut(s)	320, 883, 902
Eco32I	GATATC	2 cut(s)	691, 739
EcoRII	CCWGG	5 cut(s)	123, 505, 562, 840, 952
EcoRV	GATATC	2 cut(s)	691, 739
EcoT38I	GRGCYC	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	551, 811
FaiI	YATR	9 cut(s)	395, 549, 638, 651, 653, 735, 804, 809, 942
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	2 cut(s)	547, 807
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	75, 207
FokI	GGATG	2 cut(s)	25, 969
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	75, 207
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	2 cut(s)	75, 207
GsuI	CTGGAG	1 cut(s)	863
HaeIII	GGCC	3 cut(s)	5, 561, 840
HapII	CCGG	4 cut(s)	263, 870, 929, 986
Hin1II	CATG	2 cut(s)	551, 811
HincII	GTYRAC	2 cut(s)	526, 757
HindII	GTYRAC	2 cut(s)	526, 757
HinfI	GANTC	6 cut(s)	16, 34, 155, 576, 866, 961
HpaI	GTTAAC	2 cut(s)	526, 757
HpaII	CCGG	4 cut(s)	263, 870, 929, 986
HphI	GGTGA	3 cut(s)	119, 521, 884
Hpy166II	GTNNAC	5 cut(s)	195, 234, 526, 757, 767
Hpy188I	TCNGA	4 cut(s)	354, 412, 487, 853
Hpy188III	TCNNGA	6 cut(s)	167, 442, 583, 694, 749, 823
Hpy8I	GTNNAC	5 cut(s)	195, 234, 526, 757, 767
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	2 cut(s)	192, 680
HpyCH4IV	ACGT	3 cut(s)	335, 552, 753
HpyCH4V	TGCA	7 cut(s)	227, 360, 605, 674, 708, 836, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 412
HpyF3I	CTNAG	3 cut(s)	45, 183, 486
HpySE526I	ACGT	3 cut(s)	335, 552, 753
Hsp92II	CATG	2 cut(s)	551, 811
KspAI	GTTAAC	2 cut(s)	526, 757
Kzo9I	GATC	2 cut(s)	365, 745
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	3 cut(s)	335, 552, 753
MaeIII	GTNAC	2 cut(s)	509, 980
MalI	GATC	2 cut(s)	367, 747
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	2 cut(s)	365, 745
MboII	GAAGA	6 cut(s)	142, 321, 478, 571, 898, 917
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	497, 701, 770
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	875, 955
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	525, 756
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	263, 870, 929, 986
MspR9I	CCNGG	6 cut(s)	125, 507, 564, 842, 954, 986
MunI	CAATTG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	5 cut(s)	125, 507, 564, 842, 954
MwoI	GCNNNNNNNGC	2 cut(s)	134, 412
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	2 cut(s)	365, 745
NlaIII	CATG	2 cut(s)	551, 811
NlaIV	GGNNCC	3 cut(s)	27, 91, 189
NmuCI	GTSAC	2 cut(s)	509, 980
NspV	TTCGAA	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	840
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	4 cut(s)	16, 34, 155, 576
PfoI	TCCNGGA	1 cut(s)	952
PkrI	GCNGC	2 cut(s)	76, 208
PleI	GAGTC	2 cut(s)	874, 955
PpsI	GAGTC	2 cut(s)	874, 955
Psp6I	CCWGG	5 cut(s)	123, 505, 562, 840, 952
PspGI	CCWGG	5 cut(s)	123, 505, 562, 840, 952
PspN4I	GGNNCC	3 cut(s)	27, 91, 189
PspPI	GGNCC	1 cut(s)	560
PsrI	GAACNNNNNNTAC	2 cut(s)	710, 742
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	2 cut(s)	202, 728
RsaNI	GTAC	2 cut(s)	201, 727
SaqAI	TTAA	2 cut(s)	525, 756
SatI	GCNGC	2 cut(s)	75, 207
Sau3AI	GATC	2 cut(s)	365, 745
Sau96I	GGNCC	1 cut(s)	560
ScaI	AGTACT	2 cut(s)	202, 728
SchI	GAGTC	2 cut(s)	875, 955
ScrFI	CCNGG	6 cut(s)	125, 507, 564, 842, 954, 986
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	694, 821
SmoI	CTYRAG	2 cut(s)	694, 821
Sse9I	AATT	3 cut(s)	497, 701, 770
SseBI	AGGCCT	1 cut(s)	840
SsiI	CCGC	3 cut(s)	74, 87, 415
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	840
StyD4I	CCNGG	6 cut(s)	123, 505, 562, 840, 952, 984
TaaI	ACNGT	2 cut(s)	192, 680
TaiI	ACGT	3 cut(s)	338, 555, 756
TaqI	TCGA	1 cut(s)	158
TaqII	GACCGA	3 cut(s)	379, 427, 926
TasI	AATT	3 cut(s)	497, 701, 770
TatI	WGTACW	2 cut(s)	200, 726
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	4 cut(s)	16, 34, 155, 576
Tru1I	TTAA	2 cut(s)	525, 756
Tru9I	TTAA	2 cut(s)	525, 756
TscAI	CASTG	2 cut(s)	49, 888
TseFI	GTSAC	2 cut(s)	509, 980
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	2 cut(s)	509, 980
TspDTI	ATGAA	2 cut(s)	336, 558
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	2 cut(s)	49, 888
XapI	RAATTY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	2 cut(s)	202, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.