Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8195818.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 621

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8195818.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

gtcaagacgggaatgacgatgaccgagaaaatattggctagggcttctgagaaaacccatttgagccaaggtgacaatgtttgggttaacattgatgttctgatgacccatgatgtctgtggccctggttcctttggaatcttcaagaaagagtttggccagaatgctaaggtttgggatcgagaaaagattgtagtcatacctgaccattatatattcactactgatgagcgtgcaaaccgtaatgtggataccttgagggatttctgcacggagcagaacatcaagtacttctatgatatcaaggatcttggtaactttcaggtgtggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

111

Amino Acids

12.9

Weight (kDa)

5.88

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	186, 315
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	124
AlwI	GGATC	2 cut(s)	186, 315
AoxI	GGCC	2 cut(s)	121, 157
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	67, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	67, 124
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	123, 159
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	123, 159
Bsp143I	GATC	2 cut(s)	178, 307
BspANI	GGCC	2 cut(s)	123, 159
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	186, 315
BssECI	CCNNGG	2 cut(s)	67, 124
BssMI	GATC	2 cut(s)	178, 307
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	48, 168
BstKTI	GATC	2 cut(s)	181, 310
BstMBI	GATC	2 cut(s)	178, 307
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	123, 159
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	38, 44, 66, 123, 159
CviKI_1	RGCY	5 cut(s)	38, 44, 66, 123, 159
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	48, 168
DpnI	GATC	2 cut(s)	180, 309
DpnII	GATC	2 cut(s)	178, 307
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	111, 200, 213, 215, 297
FatI	CATG	1 cut(s)	109
FspBI	CTAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	123, 159
Hin1II	CATG	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	138
HpaI	GTTAAC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	49, 102
Hpy188III	TCNNGA	3 cut(s)	4, 145, 182
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	236, 270
HpyF3I	CTNAG	2 cut(s)	48, 168
Hsp92II	CATG	1 cut(s)	113
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	178, 307
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	5 cut(s)	111, 138, 173, 216, 308
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	71, 314
MalI	GATC	2 cut(s)	180, 309
MboI	GATC	2 cut(s)	178, 307
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	1 cut(s)	252
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	178, 307
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	178, 307
Sau96I	GGNCC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	5 cut(s)	73, 174, 205, 257, 327
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	38
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.