Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

13049890 .. 13054772

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCTTACTCCACTGTTGCTCCACCCTCCACCTCCTTCATCAACAACACCACCAAGAAGGATTTGGGTCTCTCTGCTTTCTCTTCCACGTCGCCGGCGTCATTTCCGAGATGCAAGAGATCGATCTCCAAGAAAATCTGCTCCGTCATGGCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACCGGCTCGGTCAAGACGGGAATGACGATGACCGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACCGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGATTTCTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGTCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTGCTGCTCGGTACAGATTCTCACACCTGCACCGCTGGAGCTTTTGGACAATTTGCTACTGGAATCGGGAATACTGATGCAGGTTTCGTATTGGGCACTGGGAAGCTTTTGCTCAAGGTGCCTCCAACTCTGAGATTTGTGCTGGATGGTGAAATGCCTGACTATTTGCTTGCCAAAGACTTGATTTTACAAATTATTGGTGAAATCTCTGTTGCTGGTGCAACATATAAAGCTATGGAGTTTGTTGGCAGCACTGTTGAAAGCTTAAGTATGGAAGAGAGGATGACATTATGCAACATGGTTGTTGAAGCTGGGGGTAAAAACGGTATTGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGGATAAAACATTTCTTACTGAGTACAGATTTGATATCTCAAAACTGGAGCCATTGGTGGCAAAGCCTCATTCTCCCGATAACCGTGCTTTAGCAAGAGAATGCAAAGATGTGAAAATTGACAGAGTCTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCCAAAGTTTTTCTAGCTTCGGGGAAAAAGGTCAAAGTACCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGATGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGCAAGACTTGCTCACAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCAGTTGTGGTGCTTGCTTGGGTGGTCCTAAGGACACGTATGCTCGCTTGAATGAACCACAGGTATGTGTGTCTACTACGAACAGGAACTTCCCAGGCAGAATGGGGCACAAGGAAGGACAGATATATCTTGCTTCACCATATACAGCTGCAGCATCTGCTTTGACCGGTTATGTTACCGACCCAAGAGAGTTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

497

Amino Acids

53.98

Weight (kDa)

7.81

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	91 - 317	1.5e-50	Aconitase family (aconitate hydratase)
Aconitase	PF00330	350 - 487	2.7e-26	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	620, 1291
Acc36I	ACCTGC	4 cut(s)	620, 656, 1189, 1291
AccB1I	GGYRCC	2 cut(s)	151, 703
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	1364
AciI	CCGC	2 cut(s)	169, 618
AclWI	GGATC	3 cut(s)	507, 1093, 1237
AcyI	GRCGYC	2 cut(s)	98, 152
AfaI	GTAC	8 cut(s)	482, 598, 944, 974, 1093, 1164, 1179, 1211
AfiI	CCNNNNNNNGG	4 cut(s)	439, 1226, 1232, 1298
AflII	CTTAAG	1 cut(s)	850
AflIII	ACRYGT	2 cut(s)	306, 1326
AgeI	ACCGGT	1 cut(s)	1457
AgsI	TTSAA	4 cut(s)	337, 845, 893, 1342
AjiI	CACGTC	2 cut(s)	90, 307
AjnI	CCWGG	5 cut(s)	259, 316, 577, 1225, 1384
AluBI	AGCT	8 cut(s)	626, 691, 818, 849, 896, 1142, 1268, 1439
AluI	AGCT	8 cut(s)	626, 691, 818, 849, 896, 1142, 1268, 1439
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	3 cut(s)	507, 1093, 1237
AlwNI	CAGNNNCTG	1 cut(s)	1448
AoxI	GGCC	2 cut(s)	313, 575
ApeKI	GCWGC	6 cut(s)	589, 834, 1121, 1124, 1439, 1442
AsiGI	ACCGGT	1 cut(s)	1457
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	314, 370, 1316
AsuHPI	GGTGA	4 cut(s)	275, 746, 797, 1419
AvaII	GGWCC	2 cut(s)	370, 1316
AxyI	CCTNAGG	1 cut(s)	1320
BaeGI	GKGCMC	2 cut(s)	683, 1401
BanI	GGYRCC	2 cut(s)	151, 703
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	1208
BbvI	GCAGC	6 cut(s)	576, 846, 1108, 1111, 1426, 1454
BccI	CCATC	2 cut(s)	725, 1195
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BciT130I	CCWGG	5 cut(s)	261, 318, 579, 1227, 1386
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	231, 1139
BfmI	CTRYAG	1 cut(s)	1440
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	850
BfuAI	ACCTGC	4 cut(s)	620, 656, 1189, 1291
BisI	GCNGC	6 cut(s)	590, 835, 1122, 1125, 1440, 1443
BlsI	GCNGC	6 cut(s)	591, 836, 1123, 1126, 1441, 1444
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	5 cut(s)	261, 318, 579, 1227, 1386
Bme18I	GGWCC	2 cut(s)	370, 1316
BmgBI	CACGTC	2 cut(s)	90, 307
BmgT120I	GGNCC	3 cut(s)	314, 370, 1316
BmiI	GGNNCC	4 cut(s)	153, 371, 705, 999
BmrFI	CCNGG	5 cut(s)	261, 318, 579, 1227, 1386
BmrI	ACTGGG	2 cut(s)	693, 1287
BmsI	GCATC	3 cut(s)	101, 652, 1454
BmuI	ACTGGG	2 cut(s)	693, 1287
BpiI	GAAGAC	1 cut(s)	1208
BpmI	CTGGAG	3 cut(s)	600, 642, 1016
BpuEI	CTTGAG	4 cut(s)	469, 543, 683, 968
Bsa29I	ATCGAT	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	1329
BsaBI	GATNNNNATC	1 cut(s)	386
BsaHI	GRCGYC	2 cut(s)	98, 152
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	259, 316, 1384
BsaWI	WCCGGW	1 cut(s)	1457
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	439, 1226, 1232, 1298
Bse118I	RCCGGY	3 cut(s)	94, 185, 1457
Bse1I	ACTGG	6 cut(s)	649, 688, 999, 1099, 1220, 1293
Bse21I	CCTNAGG	1 cut(s)	1320
Bse3DI	GCAATG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	5 cut(s)	261, 318, 579, 1227, 1386
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	259, 316, 1384
BseGI	GGATG	4 cut(s)	736, 873, 1206, 1210
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	4 cut(s)	439, 1226, 1232, 1298
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	231, 707, 960
BseNI	ACTGG	6 cut(s)	649, 688, 999, 1099, 1220, 1293
BseSI	GKGCMC	2 cut(s)	683, 1401
BseXI	GCAGC	6 cut(s)	576, 846, 1108, 1111, 1426, 1454
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	2 cut(s)	445, 598
BshFI	GGCC	2 cut(s)	315, 577
BshNI	GGYRCC	2 cut(s)	151, 703
BshTI	ACCGGT	1 cut(s)	1457
BshVI	ATCGAT	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	95, 186, 1458
BslFI	GGGAC	3 cut(s)	383, 902, 1275
BslI	CCNNNNNNNGG	4 cut(s)	439, 1226, 1232, 1298
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	3 cut(s)	383, 902, 1275
BsmI	GAATGC	2 cut(s)	361, 1055
BsnI	GGCC	2 cut(s)	315, 577
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	260, 683, 1401
Bsp1407I	TGTACA	1 cut(s)	1209
Bsp143I	GATC	5 cut(s)	119, 123, 499, 1085, 1229
BspACI	CCGC	2 cut(s)	169, 618
BspANI	GGCC	2 cut(s)	315, 577
BspCNI	CTCAG	3 cut(s)	232, 708, 961
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	153, 371, 705, 999
BspMAI	CTGCAG	1 cut(s)	1444
BspMI	ACCTGC	4 cut(s)	620, 656, 1189, 1291
BspPI	GGATC	3 cut(s)	507, 1093, 1237
BspT107I	GGYRCC	2 cut(s)	151, 703
BspTI	CTTAAG	1 cut(s)	850
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	3 cut(s)	94, 185, 1457
BsrGI	TGTACA	1 cut(s)	1209
BsrI	ACTGG	6 cut(s)	649, 688, 999, 1099, 1220, 1293
BssAI	RCCGGY	3 cut(s)	94, 185, 1457
BssECI	CCNNGG	3 cut(s)	259, 316, 1384
BssMI	GATC	5 cut(s)	119, 123, 499, 1085, 1229
BssNI	GRCGYC	2 cut(s)	98, 152
Bst2UI	CCWGG	5 cut(s)	261, 318, 579, 1227, 1386
Bst4CI	ACNGT	6 cut(s)	16, 434, 841, 911, 1034, 1214
Bst6I	CTCTTC	2 cut(s)	88, 855
BstACI	GRCGYC	2 cut(s)	98, 152
BstAFI	CTTAAG	1 cut(s)	850
BstAPI	GCANNNNNTGC	2 cut(s)	1245, 1448
BstAUI	TGTACA	1 cut(s)	1209
BstBAI	YACGTR	1 cut(s)	1329
BstC8I	GCNNGC	7 cut(s)	96, 177, 426, 575, 756, 1306, 1336
BstDEI	CTNAG	4 cut(s)	240, 716, 969, 1320
BstF5I	GGATG	4 cut(s)	736, 873, 1206, 1210
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	122, 126, 502, 1088, 1232
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	119, 123, 499, 1085, 1229
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 703, 1245, 1448
BstNI	CCWGG	5 cut(s)	261, 318, 579, 1227, 1386
BstSCI	CCNGG	5 cut(s)	259, 316, 577, 1225, 1384
BstSFI	CTRYAG	1 cut(s)	1440
BstSLI	GKGCMC	2 cut(s)	683, 1401
BstV1I	GCAGC	6 cut(s)	576, 846, 1108, 1111, 1426, 1454
BstV2I	GAAGAC	1 cut(s)	1208
BstX2I	RGATCY	2 cut(s)	499, 1085
BstYI	RGATCY	2 cut(s)	499, 1085
Bsu15I	ATCGAT	1 cut(s)	122
Bsu36I	CCTNAGG	1 cut(s)	1320
BsuRI	GGCC	2 cut(s)	315, 577
BsuTUI	ATCGAT	1 cut(s)	122
BtrI	CACGTC	2 cut(s)	90, 307
BtsCI	GGATG	4 cut(s)	736, 873, 1206, 1210
BtsIMutI	CAGTG	4 cut(s)	12, 681, 837, 1227
BveI	ACCTGC	4 cut(s)	620, 656, 1189, 1291
Cac8I	GCNNGC	7 cut(s)	96, 177, 426, 575, 756, 1306, 1336
CaiI	CAGNNNCTG	1 cut(s)	1448
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	3 cut(s)	94, 185, 1457
Cfr13I	GGNCC	3 cut(s)	314, 370, 1316
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	8 cut(s)	481, 597, 943, 973, 1092, 1163, 1178, 1210
CspAI	ACCGGT	1 cut(s)	1457
CspCI	CAANNNNNGTGG	2 cut(s)	1156, 1191
CviAII	CATG	4 cut(s)	148, 302, 545, 883
CviQI	GTAC	8 cut(s)	481, 597, 943, 973, 1092, 1163, 1178, 1210
DdeI	CTNAG	4 cut(s)	240, 716, 969, 1320
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	5 cut(s)	121, 125, 501, 1087, 1231
DpnII	GATC	5 cut(s)	119, 123, 499, 1085, 1229
Eam1104I	CTCTTC	2 cut(s)	88, 855
EarI	CTCTTC	2 cut(s)	88, 855
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	74
Eco32I	GATATC	3 cut(s)	445, 493, 985
Eco47I	GGWCC	2 cut(s)	370, 1316
Eco81I	CCTNAGG	1 cut(s)	1320
EcoRII	CCWGG	5 cut(s)	259, 316, 577, 1225, 1384
EcoRV	GATATC	3 cut(s)	445, 493, 985
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	4 cut(s)	151, 305, 548, 886
FaqI	GGGAC	3 cut(s)	383, 902, 1275
FatI	CATG	4 cut(s)	147, 301, 544, 882
FblI	GTMKAC	1 cut(s)	1364
Fnu4HI	GCNGC	6 cut(s)	590, 835, 1122, 1125, 1440, 1443
FokI	GGATG	4 cut(s)	743, 880, 1213, 1217
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	6 cut(s)	590, 835, 1122, 1125, 1440, 1443
FspBI	CTAG	2 cut(s)	231, 1139
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	6 cut(s)	590, 835, 1122, 1125, 1440, 1443
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	3 cut(s)	600, 642, 1016
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	315, 577
HapII	CCGG	3 cut(s)	95, 186, 1458
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	2 cut(s)	98, 152
Hin1II	CATG	4 cut(s)	151, 305, 548, 886
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	2 cut(s)	689, 847
HinfI	GANTC	4 cut(s)	330, 602, 648, 1074
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	3 cut(s)	95, 186, 1458
HphI	GGTGA	4 cut(s)	275, 746, 797, 1419
Hpy166II	GTNNAC	3 cut(s)	280, 1210, 1365
Hpy188I	TCNGA	4 cut(s)	108, 166, 241, 717
Hpy188III	TCNNGA	6 cut(s)	196, 337, 448, 560, 652, 1025
Hpy8I	GTNNAC	3 cut(s)	280, 1210, 1365
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	46, 52, 557, 1400
HpyCH4III	ACNGT	6 cut(s)	16, 434, 841, 911, 1034, 1214
HpyCH4IV	ACGT	3 cut(s)	89, 306, 1328
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 703, 1245, 1448
HpyF3I	CTNAG	4 cut(s)	240, 716, 969, 1320
HpySE526I	ACGT	3 cut(s)	89, 306, 1328
Hsp92I	GRCGYC	2 cut(s)	98, 152
Hsp92II	CATG	4 cut(s)	151, 305, 548, 886
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	119, 123, 499, 1085, 1229
LmnI	GCTCC	6 cut(s)	25, 146, 166, 466, 623, 997
Lsp1109I	GCAGC	6 cut(s)	576, 846, 1108, 1111, 1426, 1454
LweI	GCATC	3 cut(s)	101, 652, 1454
MaeI	CTAG	2 cut(s)	231, 1139
MaeII	ACGT	3 cut(s)	89, 306, 1328
MaeIII	GTNAC	4 cut(s)	263, 506, 1274, 1465
MalI	GATC	5 cut(s)	121, 125, 501, 1087, 1231
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	5 cut(s)	119, 123, 499, 1085, 1229
MboII	GAAGA	5 cut(s)	75, 232, 325, 872, 1208
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	2 cut(s)	499, 1085
MhlI	GDGCHC	3 cut(s)	260, 683, 1401
MluCI	AATT	4 cut(s)	251, 635, 777, 1065
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	1083
MmeI	TCCRAC	1 cut(s)	734
MreI	CGCCGGCG	1 cut(s)	94
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	3 cut(s)	279, 513, 851
MslI	CAYNNNNRTG	1 cut(s)	1354
MspA1I	CMGCKG	2 cut(s)	620, 1439
MspCI	CTTAAG	1 cut(s)	850
MspI	CCGG	3 cut(s)	95, 186, 1458
MspR9I	CCNGG	5 cut(s)	261, 318, 579, 1227, 1386
MunI	CAATTG	1 cut(s)	251
Mva1269I	GAATGC	2 cut(s)	361, 1055
MvaI	CCWGG	5 cut(s)	261, 318, 579, 1227, 1386
MwoI	GCNNNNNNNGC	4 cut(s)	166, 703, 1245, 1448
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	152
NdeII	GATC	5 cut(s)	119, 123, 499, 1085, 1229
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	151, 305, 548, 886
NlaIV	GGNNCC	4 cut(s)	153, 371, 705, 999
NmuCI	GTSAC	2 cut(s)	263, 1274
PaqCI	CACCTGC	2 cut(s)	620, 1291
PceI	AGGCCT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 206
PctI	GAATGC	2 cut(s)	361, 1055
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	330, 602, 648
PflFI	GACNNNGTC	1 cut(s)	1073
PinAI	ACCGGT	1 cut(s)	1457
PkrI	GCNGC	6 cut(s)	591, 836, 1123, 1126, 1441, 1444
PleI	GAGTC	1 cut(s)	1082
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	1082
Ppu21I	YACGTR	1 cut(s)	1329
Psp6I	CCWGG	5 cut(s)	259, 316, 577, 1225, 1384
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	5 cut(s)	259, 316, 577, 1225, 1384
PspN4I	GGNNCC	4 cut(s)	153, 371, 705, 999
PspPI	GGNCC	3 cut(s)	314, 370, 1316
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstI	CTGCAG	1 cut(s)	1444
PstNI	CAGNNNCTG	1 cut(s)	1448
PsuI	RGATCY	2 cut(s)	499, 1085
PsyI	GACNNNGTC	1 cut(s)	1073
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	8 cut(s)	482, 598, 944, 974, 1093, 1164, 1179, 1211
RsaNI	GTAC	8 cut(s)	481, 597, 943, 973, 1092, 1163, 1178, 1210
RseI	CAYNNNNRTG	1 cut(s)	1354
SaqAI	TTAA	3 cut(s)	279, 513, 851
SatI	GCNGC	6 cut(s)	590, 835, 1122, 1125, 1440, 1443
Sau3AI	GATC	5 cut(s)	119, 123, 499, 1085, 1229
Sau96I	GGNCC	3 cut(s)	314, 370, 1316
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	1083
ScrFI	CCNGG	5 cut(s)	261, 318, 579, 1227, 1386
SduI	GDGCHC	3 cut(s)	260, 683, 1401
SfaNI	GCATC	3 cut(s)	101, 652, 1454
SfcI	CTRYAG	1 cut(s)	1440
SfoI	GGCGCC	1 cut(s)	153
SgrAI	CRCCGGYG	1 cut(s)	94
SinI	GGWCC	2 cut(s)	370, 1316
SmiMI	CAYNNNNRTG	1 cut(s)	1354
SmlI	CTYRAG	5 cut(s)	448, 558, 698, 850, 947
SmoI	CTYRAG	5 cut(s)	448, 558, 698, 850, 947
Sse9I	AATT	4 cut(s)	251, 635, 777, 1065
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	2 cut(s)	169, 618
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	231, 1139
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	5 cut(s)	259, 316, 577, 1225, 1384
TaaI	ACNGT	6 cut(s)	16, 434, 841, 911, 1034, 1214
TaiI	ACGT	3 cut(s)	92, 309, 1331
TaqI	TCGA	1 cut(s)	122
TaqII	GACCGA	3 cut(s)	181, 230, 387
TasI	AATT	4 cut(s)	251, 635, 777, 1065
TatI	WGTACW	4 cut(s)	480, 972, 1091, 1209
TfiI	GAWTC	3 cut(s)	330, 602, 648
Tru1I	TTAA	3 cut(s)	279, 513, 851
Tru9I	TTAA	3 cut(s)	279, 513, 851
TscAI	CASTG	4 cut(s)	19, 688, 844, 1227
TseFI	GTSAC	2 cut(s)	263, 1274
TseI	GCWGC	6 cut(s)	589, 834, 1121, 1124, 1439, 1442
Tsp45I	GTSAC	2 cut(s)	263, 1274
TspDTI	ATGAA	3 cut(s)	28, 312, 1359
TspGWI	ACGGA	2 cut(s)	133, 479
TspRI	CASTG	4 cut(s)	19, 688, 844, 1227
Tth111I	GACNNNGTC	1 cut(s)	1073
Vha464I	CTTAAG	1 cut(s)	850
VpaK11BI	GGWCC	2 cut(s)	370, 1316
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 308
XmiI	GTMKAC	1 cut(s)	1364
XspI	CTAG	2 cut(s)	231, 1139
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.