Rh5DG293900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000647
Physical Location & Seq
Reverse (-)
37088610 .. 37107930
19321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG293900.1

Sequence Viewer

Length: 273 bp
ATGGGCTCTTCATTTCTGTCCAGACGGCAAAACCCCGAGGACACCGAAAACCTCAGCCACAGCTTGAGGAGTCGCTTGGATTTTGGTTTTGAGTGGGGATCGAGTTTCACGTGGGTTTTGCTGGGCAGGCAGTTGGAGAGGTCCGAGTCGCTGCGGAGGACAAGGGTGGTGGTGGAAAGACGGCGGCTTGTGCAGATCATGGACAAGCATATCAGAGATGCTAGAAGCTTGCCAGTCATGAACACAACGAGATCGCCTCTGCCGTGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.69

Weight (kDa)

11.4

Isoelectric Point (pI)

88.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 154, 184
AclWI GGATC 1 cut(s) 106
AcvI CACGTG 1 cut(s) 111
AluBI AGCT 2 cut(s) 63, 228
AluI AGCT 2 cut(s) 63, 228
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 138
BceAI ACGGC 3 cut(s) 41, 197, 247
BfaI CTAG 2 cut(s) 222, 271
BisI GCNGC 2 cut(s) 152, 185
BlsI GCNGC 2 cut(s) 153, 186
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 241, 273
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 36, 263
Bse1I ACTGG 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 36, 263
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 98, 195, 251
BspACI CCGC 2 cut(s) 154, 184
BspCNI CTCAG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 237
BspPI GGATC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 36, 263
BssMI GATC 3 cut(s) 98, 195, 251
Bst6I CTCTTC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 128, 230
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 263
BstKTI GATC 3 cut(s) 101, 198, 254
BstMBI GATC 3 cut(s) 98, 195, 251
BstMWI GCNNNNNNNGC 2 cut(s) 127, 190
BstV1I GCAGC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 128, 230
CciI TCATGA 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 2 cut(s) 199, 238
CviJI RGCY 5 cut(s) 6, 57, 63, 187, 228
CviKI_1 RGCY 5 cut(s) 6, 57, 63, 187, 228
DdeI CTNAG 1 cut(s) 53
DpnI GATC 3 cut(s) 100, 197, 253
DpnII GATC 3 cut(s) 98, 195, 251
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 141
Eco72I CACGTG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 202, 241
FaiI YATR 3 cut(s) 200, 210, 239
FatI CATG 2 cut(s) 198, 237
Fnu4HI GCNGC 2 cut(s) 152, 185
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 152, 185
FspBI CTAG 2 cut(s) 222, 271
GluI GCNGC 2 cut(s) 152, 185
GsaI CCCAGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 202, 241
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 70, 146
Hpy188I TCNGA 2 cut(s) 145, 215
Hpy188III TCNNGA 2 cut(s) 21, 238
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 190
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 202, 241
Kzo9I GATC 3 cut(s) 98, 195, 251
LguI GCTCTTC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 34, 107, 112, 246
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 222, 271
MaeII ACGT 1 cut(s) 110
MalI GATC 3 cut(s) 100, 197, 253
MboI GATC 3 cut(s) 98, 195, 251
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 79, 155
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 6 cut(s) 31, 60, 62, 132, 150, 267
MwoI GCNNNNNNNGC 2 cut(s) 127, 190
NdeII GATC 3 cut(s) 98, 195, 251
NlaIII CATG 2 cut(s) 202, 241
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 260
PkrI GCNGC 2 cut(s) 153, 186
PleI GAGTC 2 cut(s) 78, 154
PmaCI CACGTG 1 cut(s) 111
PmlI CACGTG 1 cut(s) 111
PpsI GAGTC 2 cut(s) 78, 154
Ppu21I YACGTR 1 cut(s) 111
PspCI CACGTG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 13
SatI GCNGC 2 cut(s) 152, 185
Sau3AI GATC 3 cut(s) 98, 195, 251
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 2 cut(s) 79, 155
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 54, 65, 113, 143, 230
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SsiI CCGC 2 cut(s) 154, 184
SspMI CTAG 2 cut(s) 222, 271
TaiI ACGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 101
TauI GCSGC 1 cut(s) 187
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 141
XspI CTAG 2 cut(s) 222, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.