Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007340.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

26390 .. 27523

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007340.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgcaagagatcggtctccaagaaaatctgctccgtcatggctccacagcagtcaagacgggaatgacaatgacagagaagatattggctagggcttctgagaaaccccaattgagcccaagtgacaatgtttgggttaacattgatgttttgatgacccatgacgacagagaaaagattgtaatcatacctgaccattatatatttactactgatgagcgggcaaaccataatgtggatatcttgagggatttctgcacggagcagaacatcaagtacttctatgatatcaaggatcttggtaactttaaggctaacctagattataagggtgtatgccatgttgcccttgctcaagaaggtcattgcaggcctggagaggtgctgctaggtacagattctcacacctgcaccgctggagagtttggacaatttgctactggaatcgggaatactgatgcaggtttcgtattgggcactgggaagcttttgctcaaggtttgcgaatgttgcatttttgttttcattctctctaatctcatgtctgatagattttatgcaaataacatgattccacggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

194

Amino Acids

21.73

Weight (kDa)

5.44

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	2 cut(s)	416, 452
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	2 cut(s)	220, 414
AclWI	GGATC	1 cut(s)	303
AfaI	GTAC	2 cut(s)	278, 394
AfiI	CCNNNNNNNGG	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	3 cut(s)	90, 320, 389
BfuAI	ACCTGC	2 cut(s)	416, 452
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	489
BpmI	CTGGAG	2 cut(s)	396, 438
BpuEI	CTTGAG	3 cut(s)	265, 339, 479
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	445, 484
Bse3DI	GCAATG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	575
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	445, 484
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	372
BsgI	GTGCAG	2 cut(s)	241, 394
BshFI	GGCC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	119, 479
Bsp143I	GATC	2 cut(s)	9, 295
BspACI	CCGC	2 cut(s)	220, 414
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	2 cut(s)	416, 452
BspPI	GGATC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	445, 484
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	2 cut(s)	9, 295
Bst2UI	CCWGG	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	222, 371
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	575
BstKTI	GATC	2 cut(s)	12, 298
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	9, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	2 cut(s)	416, 452
Cac8I	GCNNGC	2 cut(s)	222, 371
Csp6I	GTAC	2 cut(s)	277, 393
CviAII	CATG	5 cut(s)	38, 161, 341, 541, 568
CviJI	RGCY	8 cut(s)	42, 89, 95, 117, 314, 373, 487, 580
CviKI_1	RGCY	8 cut(s)	42, 89, 95, 117, 314, 373, 487, 580
CviQI	GTAC	2 cut(s)	277, 393
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	11, 297
DpnII	GATC	2 cut(s)	9, 295
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	20
Eco32I	GATATC	2 cut(s)	241, 289
EcoRII	CCWGG	1 cut(s)	373
EcoRV	GATATC	2 cut(s)	241, 289
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	5 cut(s)	41, 164, 344, 544, 571
FatI	CATG	5 cut(s)	37, 160, 340, 540, 567
FauI	CCCGC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	3 cut(s)	90, 320, 389
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	2 cut(s)	396, 438
HaeIII	GGCC	1 cut(s)	373
Hin1II	CATG	5 cut(s)	41, 164, 344, 544, 571
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	398, 444, 571
HpaI	GTTAAC	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	100, 547
Hpy188III	TCNNGA	4 cut(s)	55, 244, 356, 448
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	353
HpyCH4V	TGCA	7 cut(s)	4, 258, 369, 411, 461, 513, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	41, 164, 344, 544, 571
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	9, 295
LmnI	GCTCC	3 cut(s)	36, 47, 262
LpnPI	CCDG	9 cut(s)	204, 355, 360, 387, 402, 421, 426, 447, 465
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	3 cut(s)	90, 320, 389
MaeIII	GTNAC	2 cut(s)	122, 302
MalI	GATC	2 cut(s)	11, 297
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	2 cut(s)	9, 295
MboII	GAAGA	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	119, 479
MluCI	AATT	2 cut(s)	110, 431
MnlI	CCTC	2 cut(s)	240, 373
MseI	TTAA	2 cut(s)	138, 309
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	510
NdeII	GATC	2 cut(s)	9, 295
NlaIII	CATG	5 cut(s)	41, 164, 344, 544, 571
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	122
PaqCI	CACCTGC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	398, 444, 571
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	43
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	278, 394
RsaNI	GTAC	2 cut(s)	277, 393
SaqAI	TTAA	2 cut(s)	138, 309
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	2 cut(s)	9, 295
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	2 cut(s)	119, 479
SetI	ASST	9 cut(s)	193, 321, 364, 384, 394, 410, 466, 489, 501
SfaNI	GCATC	1 cut(s)	448
SmlI	CTYRAG	3 cut(s)	244, 354, 494
SmoI	CTYRAG	3 cut(s)	244, 354, 494
Sse9I	AATT	2 cut(s)	110, 431
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	2 cut(s)	220, 414
SspMI	CTAG	3 cut(s)	90, 320, 389
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	373
TasI	AATT	2 cut(s)	110, 431
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	398, 444, 571
Tru1I	TTAA	2 cut(s)	138, 309
Tru9I	TTAA	2 cut(s)	138, 309
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	514
TspGWI	ACGGA	2 cut(s)	23, 275
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	235
XspI	CTAG	3 cut(s)	90, 320, 389
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.