FvH4_4g21360
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000472
Physical Location & Seq
Forward (+)
24400812 .. 24407896
7085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21360.t2

Sequence Viewer

Length: 4293 bp
ATGGAGCTTACAGAAGTTGAGAGAGACGTCCGCTCTTCCATTGGTGCTGGTTCAGACTCGATCAAAGATGAAGATGAGGAAGCTCAGCTGCAGTGGGCTGCCATTGAGAGATTGCCTACATTCAGAAGGCTGAGGACCTCACTTTTCGACCTTGGTGATAGCGAAAATGGAAAAAGCAGTGGCAAAGAGTCTGCAGGGAAGAAGGTGGTTGATGTTACCAAGTTGGGAGCAGATGAGAGGCATCTTTTCATTGAGAAGATCATCAAGCACATTGAGCATGATAATCTGAGGCTGCTACAGAAAATGAGAGAAAGGATAGACAGAGTGAATGTGAAACTGCCAACTGTGGAGGTGAGGTACAAGAATTTATGTGTGGAAGCAAAGTGTGAAGTAGTAAAAGGAAAGCCGCTCCCAACGCTGTGGAACTCTCTTCTAAGCTCGTTATCAGTTTTTCGAGAGGTAATGTGGTGCAAGCATCCAGAAGCAAAGATTAGCATTCTAACAGATGTCAGTGGCATCATCAAACCTTCAAGGCTTACTCTCCTTCTTGGTCCCCCAGGGTGTGGTAAAACCACCTTCTTATTGGCACTTGCTGGAAAACTGGATAAATCCCTTAAGGTTGCAGGGGACATTTCATACAATGGCTATAAGTTAGATGAGTTTGTTCCTCAAAAAACTTCAGCGTATATAAGCCAACACGACCTTCACATACCTCAGATGACTGTTAGGGAAACAATCGAGTTTTCAGCCCGCTGTCAAGGTGTTGGAAGCAGAGCTGATATAATGCTGGAGGTTAGCAGAAGAGAAAAGGAAGCAGGAATTGTTCCTGATCCAGATATTGACACCTACATGAAGGCCATCTCAGCTGAAGGACAAAAGAAAAATCTCCAAACTGACTATGTTTTGAAGATGCTAGGACTAGATATCTGCAGTGATACTATGGTTGGTGATGCGTTACAAAGAGGCATTTCAGGTGGCCAAAAGAAAAGGCTGACAACAGGAGAGATGATTGTCGGTCCCACAAAAGCACTATTTATGGATGAAATATCAACTGGATTAGACAGCTCTACTACATTTCAGATAGTCACATATCTACAGCAGTTGGTGCACATCACAGATACAACTGCATTGGTGTCACTTCTACAACCAGCACCTGAGACATTTGATTTATTTGATGATGTGATACTAATGGCAGAGGGGAAGATAGTTTACCATGGTCCTCGAAGTCATGCGCTTCAGTTTTTCGAAGATTGTGGTTTTAAGTGCCCTGCAAGAAAGGGTGCTGCCGATTTTCTACAGGAGGTAATCTCAAAGAAGGATCAAGCACAATACTGGAAGCATGATAACATTCCCTACAATTATGTTTCTGTGGATGAATTCACTCAGCTTTTCAGAGCAAGTTGGATGGGAAAGAAGTTAAGTGATGAGCTCTCAAAACCATATGAGAAATCACAAGGCCAGGATAAGGCTTTATCATTTAGCATCTATTCTGTGAGAAAATGGGATTTGTTCAAAGCTTGCATGGGTAGAGAGCTGCTTCTTATGAAACGAAATTCCTTTGTCTATGTATTCAAAACAGTGCAGCTTTTCATCACTGCACTTTTGACAACTACGGTATTCATACGTACTCAGATGGATGTGGATTTGACAAGTGCAAATTATTTTATGGGTGCATTGTTCTATACACTTGTGAGACTTATGACAAATGGAGTTGCAGAGCTGTCTCTGACTATCACCAGACTACCAGTGGTTGATAAGCAACTAGCATTCTACCTTTATCCAGCATGGTCATATTCAATTCCAGCCTCTCTTCTTAAAATTCCTTTTTCACTAAGTGATGCGGCGTTGTGGACAGTTATAACTTACTATGGTGTTGGGTACAGCCCAGAAATACAAAGGTTCTTCTGCCAGCTCCTTGTGCTGTTTGCGCTGCATCAAGCATCAACATCCATGTGTCGTTTGATTGCAGTAATTTTCCGGTCCATGGTTGTTGCAACAACTTTTGGCACTTTAATCTTAGTACTAATGTTTATATTTGGAGGCTTCATTCTGCCACCACCCTCATTACCTGTTTGGTTGAAGTGGGGATTCTGGTGTTCTCCTATGACTTATGGGGAAATAGCTACTAGTCTGAATGAGTTCCTTGCTCCTCGATGGCAAAAGGTTTCAATGGGAAACACAACCTTGGGAAATGAAATTCTAACCAGTCATGGTTTGAACTTTGATAGCTACTTCTATTGGATATCTGTAGGGGCTTTATTCGGGTTCACAGCAATCTTTGATCTTGGATTTGTTATAGCCTTAACTTACTTAAAACCTCCAAAGATGTCTCGTGCTATTATTTCGAAAAAGAGATTATCTCAACTCAAAGGACAAGATTCTGGGAACAAGACTGGTGGAAAGTTGGAAAATGTGTCAACTCCAGCTGATTTTTACAAAACCATTGAAGAAACAGGGAAGATGGTTCTGCCATTTGAGCCACTGACAATCTCATTTAAGGATGTGCAGTACAGTGTTGATATCCCACCGGAAATGAAAAGGTACGGTTTCGATCAGAAAAACCTTCAGCTGCTAAAAGATATAACAGGAGCATTTAGGCCAGGAGTTCTTACAGCATTGATGGGAGTCAGTGGGGCTGGGAAAACAACTCTAATGGATGTTCTTTCGGGAAGGAAAACCGGAGGTACTATTGAAGGAGATATAAGAATAGGAGGCTATCCCAAAGTCCAGAAGACATTTGCTAGAATATCAGGTTACTGTGAACAATTTGATATACATTCTCCACACATCACAGTAGGAGAGTCAGTTATGTTTTCAGCTTGGTTGAGGTTGCCACCTGAAATTGATCCAGACACAAAAGCTAAATTTGTTGAAGAAGTTATTGAAACAATTGAATTGGAGGATATAAGAGATTCTTTAGTTGGCATTCCTGGCCAAAGTGGCTTGTCAACCGAACAACGCAAAAGGCTAACAATTGCAGTTGAGCTTGTTTCCAATCCATCAATAATATTTATGGATGAACCTACATCAGGATTAGATGCCAGAGCAGCTGCGATTGTCATGCGTGCTGTGAAGAATGTTGTTGCCACAGGAAGAACAACTATTTGCACAATTCACCAACCTGGCATTGATATATTTGAGGCCTTTGATGAGTTAATTCTGATGAAAACTGGAGGGCAAATCATCTATTCTGGAAGTCTGGGACATAATTCGAGTAAACTCATTGAATATTTTGAGGGTATTCCTGGTGTCGCAAAGATCAAAGATAACTATAATCCAGCAACATGGATGTTAGAAGTTACTTCGGCTTCAGTAGAAGCAGAACTTGGCTTTGATTTTGCGAACATTTATAAAGAATCTACTCTGTATAGAGACACAGTTGAGTTGGTCAGACAGATAAGTGAACCAAAGCCAGGTTCAAGAGCTTTGCACTTTTCCACCCAATTTCCACAAAGTAGCTGGGTGCAGTTTAAGGCATGCTTATGGAAACAACACTTATCCTATTGGAGATGTCCTGAATACAATCTAGCACGTTTCATGTTCATGATTGTTGCCTCAGCGTTGTTTGGTGCAATCTTCTGGCAGAAAGGGAAGGAAATTAATAATGAGCAGGATCTGTTGACCATACTTGGGTCCATGTACATTGCTGTAATATTCCTGGGAATAAACAATTGTTCAACAGTTCTTCCCTATGTGGCTACTGAGCGCACTGTTTTGTACCGCGAAAGATTTGCTGGGATGTACTCATCAAAGGCTTATTCCTTTGCTCAGGTGGCCATGGAAATACCTTATACTATGTTGCAGGCAATTCTATATGTGGCCATTACATATCCTACCATAGGCTACTATTGGACTGCTTCCAAGGTTTTTTGGTACTTCTATGCAACCTTCTGTACATTTCTGTACTTTGTATACCTTGGGATGTTGTTGGTTTCTTTGAGCTCAAACATGGAAGTAGCTTCAATATTGGCCACTGCAATCTACACCCTATTAAATCTCTTCTCTGGCTTCCTCATGCCTGGACCGAAAATTCCGAAGTGGTGGGTTTGGTGCTACTGGATCTGTCCCACATCATGGTCACTAAATGGCCTCCTGACTTCACAATATGGAGACATGGACAAAGAGATTTTGATTTTTGGAGAGCATAAAACAGTTGCTTCTTTCCTAAAAGATTATTATGGTTTTCATCATAATCTTTTACCCCTTGTAGCTATTGCTCTGATTACCTTCCCAATTGCTTTTGCTTTTCTATTTGCCTATTTCATAGGAAGATTAAATTTCCAAAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1431

Amino Acids

160.98

Weight (kDa)

8.01

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 143 - 216 1e-05 ABC-2 type transporter
ABC2_membrane PF01061 264 - 475 3.6e-44 ABC-2 type transporter
PDR_assoc PF08370 480 - 542 5e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 619 - 771 2.4e-20 ABC transporter
ABC2_membrane PF01061 917 - 1130 7.5e-58 ABC-2 type transporter
ABC2_membrane_3 PF12698 968 - 1175 2e-09 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1859, 3351
AatII GACGTC 1 cut(s) 30
AccB7I CCANNNNNTGG 2 cut(s) 563, 4074
AccBSI CCGCTC 2 cut(s) 33, 409
AccI GTMKAC 1 cut(s) 3912
AccII CGCG 1 cut(s) 3723
AciI CCGC 5 cut(s) 31, 407, 751, 1841, 3721
AclWI GGATC 5 cut(s) 824, 1326, 2840, 3621, 4067
AcoI YGGCCR 5 cut(s) 976, 2932, 3774, 3819, 3969
AcsI RAATTY 8 cut(s) 364, 1376, 1552, 1818, 2196, 2864, 4029, 4276
AcuI CTGAAG 5 cut(s) 663, 888, 1220, 2549, 3294
AcyI GRCGYC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 1835
AfiI CCNNNNNNNGG 8 cut(s) 563, 1465, 1984, 3029, 3413, 3630, 3839, 4074
AflII CTTAAG 1 cut(s) 614
AhlI ACTAGT 1 cut(s) 2126
AjnI CCWGG 9 cut(s) 556, 1458, 2599, 2929, 3121, 3244, 3412, 3657, 4018
AjuI GAANNNNNNNTTGG 6 cut(s) 687, 719, 3309, 3341, 3400, 3432
Alw21I GWGCWC 3 cut(s) 1110, 1431, 3944
Alw26I GTCTC 7 cut(s) 18, 1151, 1687, 1728, 2334, 3366, 4104
Alw44I GTGCAC 1 cut(s) 1106
AlwI GGATC 5 cut(s) 824, 1326, 2840, 3621, 4067
AlwNI CAGNNNCTG 2 cut(s) 1154, 3616
ApaLI GTGCAC 1 cut(s) 1106
ApoI RAATTY 8 cut(s) 364, 1376, 1552, 1818, 2196, 2864, 4029, 4276
AseI ATTAAT 1 cut(s) 3600
Asp700I GAANNNNTTC 1 cut(s) 2138
AspLEI GCGC 3 cut(s) 1234, 1930, 3708
AspS9I GGNCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
AsuHPI GGTGA 5 cut(s) 167, 364, 959, 1726, 3107
AsuII TTCGAA 2 cut(s) 1245, 2345
AvaII GGWCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
BaeGI GKGCMC 2 cut(s) 1110, 1268
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BalI TGGCCA 5 cut(s) 978, 2934, 3776, 3821, 3971
BanII GRGCYC 2 cut(s) 1431, 3944
BarI GAAGNNNNNNTAC 2 cut(s) 1193, 1225
BauI CACGAG 1 cut(s) 2331
BbsI GAAGAC 1 cut(s) 2738
Bbv12I GWGCWC 3 cut(s) 1110, 1431, 3944
BbvCI CCTCAGC 2 cut(s) 131, 3556
BccI CCATC 7 cut(s) 866, 1399, 1627, 2148, 2455, 2614, 3007
BcgI CGANNNNNNTGC 4 cut(s) 3043, 3077, 3713, 3747
BciT130I CCWGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
BcoDI GTCTC 7 cut(s) 18, 1151, 1687, 1728, 2334, 3366, 4104
BcuI ACTAGT 1 cut(s) 2126
BfaI CTAG 6 cut(s) 914, 920, 1763, 2127, 2742, 3527
BfmI CTRYAG 7 cut(s) 89, 192, 296, 928, 1094, 1295, 2247
BfrI CTTAAG 1 cut(s) 614
BglI GCCNNNNNGGC 1 cut(s) 2940
BlpI GCTNAGC 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 2022
Bme1390I CCNGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
Bme18I GGWCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
BmgT120I GGNCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
BmiI GGNNCC 3 cut(s) 553, 1018, 3634
BmrFI CCNGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
BpiI GAAGAC 1 cut(s) 2738
BplI GAGNNNNNCTC 4 cut(s) 1292, 1324, 2344, 2376
BpmI CTGGAG 3 cut(s) 809, 2406, 3192
Bpu10I CCTNAGC 3 cut(s) 131, 3556, 3768
Bpu1102I GCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 2 cut(s) 1245, 2345
BsaAI YACGTR 1 cut(s) 1625
BsaHI GRCGYC 1 cut(s) 27
BsaWI WCCGGW 3 cut(s) 1977, 2527, 2678
BsaXI ACNNNNNCTCC 4 cut(s) 341, 371, 2790, 2820
Bsc4I CCNNNNNNNGG 8 cut(s) 563, 1465, 1984, 3029, 3413, 3630, 3839, 4074
Bse1I ACTGG 8 cut(s) 606, 1057, 1337, 1745, 2205, 2398, 3175, 4061
Bse3DI GCAATG 1 cut(s) 3642
BseBI CCWGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
BseLI CCNNNNNNNGG 8 cut(s) 563, 1465, 1984, 3029, 3413, 3630, 3839, 4074
BseMI GCAATG 1 cut(s) 3642
BseNI ACTGG 8 cut(s) 606, 1057, 1337, 1745, 2205, 2398, 3175, 4061
BseRI GAGGAG 1 cut(s) 2139
BseSI GKGCMC 2 cut(s) 1110, 1268
BseYI CCCAGC 3 cut(s) 2636, 3459, 3734
BsgI GTGCAG 4 cut(s) 1581, 1601, 2525, 3485
Bsh1236I CGCG 1 cut(s) 3723
BsiHKAI GWGCWC 3 cut(s) 1110, 1431, 3944
BsiSI CCGG 3 cut(s) 1978, 2528, 2679
BslFI GGGAC 5 cut(s) 537, 641, 1002, 3216, 4050
BslI CCNNNNNNNGG 8 cut(s) 563, 1465, 1984, 3029, 3413, 3630, 3839, 4074
BsmAI GTCTC 7 cut(s) 18, 1151, 1687, 1728, 2334, 3366, 4104
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 5 cut(s) 537, 641, 1002, 3216, 4050
BsmI GAATGC 3 cut(s) 495, 1766, 2925
Bsp119I TTCGAA 2 cut(s) 1245, 2345
Bsp1286I GDGCHC 4 cut(s) 1110, 1268, 1431, 3944
Bsp1407I TGTACA 2 cut(s) 3639, 3893
Bsp1720I GCTNAGC 1 cut(s) 84
Bsp19I CCATGG 3 cut(s) 1213, 1983, 3777
BspACI CCGC 5 cut(s) 31, 407, 751, 1841, 3721
BspFNI CGCG 1 cut(s) 3723
BspHI TCATGA 1 cut(s) 3543
BspLI GGNNCC 3 cut(s) 553, 1018, 3634
BspMAI CTGCAG 3 cut(s) 93, 196, 932
BspPI GGATC 5 cut(s) 824, 1326, 2840, 3621, 4067
BspQI GCTCTTC 1 cut(s) 40
BspT104I TTCGAA 2 cut(s) 1245, 2345
BspTI CTTAAG 1 cut(s) 614
BsrBI CCGCTC 2 cut(s) 33, 409
BsrDI GCAATG 1 cut(s) 3642
BsrGI TGTACA 2 cut(s) 3639, 3893
BsrI ACTGG 8 cut(s) 606, 1057, 1337, 1745, 2205, 2398, 3175, 4061
BssNAI GTATAC 1 cut(s) 3913
BssNI GRCGYC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 2331
BssT1I CCWWGG 7 cut(s) 151, 1213, 1983, 2184, 3777, 3861, 3916
Bst1107I GTATAC 1 cut(s) 3913
Bst2BI CACGAG 1 cut(s) 2331
Bst2UI CCWGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
Bst6I CTCTTC 5 cut(s) 40, 435, 796, 1815, 4004
BstACI GRCGYC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 1105
BstAUI TGTACA 2 cut(s) 3639, 3893
BstBAI YACGTR 1 cut(s) 1625
BstBI TTCGAA 2 cut(s) 1245, 2345
BstC8I GCNNGC 7 cut(s) 473, 751, 1519, 1910, 3066, 3478, 3804
BstDSI CCRYGG 3 cut(s) 1213, 1983, 3777
BstENI CCTNNNNNAGG 2 cut(s) 3027, 3837
BstFNI CGCG 1 cut(s) 3723
BstHHI GCGC 3 cut(s) 1234, 1930, 3708
BstMAI GTCTC 7 cut(s) 18, 1151, 1687, 1728, 2334, 3366, 4104
BstNI CCWGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
BstNSI RCATGY 1 cut(s) 3480
BstSCI CCNGG 9 cut(s) 556, 1458, 2599, 2929, 3121, 3244, 3412, 3657, 4018
BstSFI CTRYAG 7 cut(s) 89, 192, 296, 928, 1094, 1295, 2247
BstSLI GKGCMC 2 cut(s) 1110, 1268
BstSNI TACGTA 1 cut(s) 1625
BstUI CGCG 1 cut(s) 3723
BstV2I GAAGAC 1 cut(s) 2738
BstX2I RGATCY 2 cut(s) 3613, 4059
BstXI CCANNNNNNTGG 2 cut(s) 420, 3285
BstYI RGATCY 2 cut(s) 3613, 4059
BstZ17I GTATAC 1 cut(s) 3913
BtgI CCRYGG 3 cut(s) 1213, 1983, 3777
BtsI GCAGTG 5 cut(s) 98, 184, 937, 1593, 3972
Cac8I GCNNGC 7 cut(s) 473, 751, 1519, 1910, 3066, 3478, 3804
CaiI CAGNNNCTG 2 cut(s) 1154, 3616
CciI TCATGA 1 cut(s) 3543
CfoI GCGC 3 cut(s) 1234, 1930, 3708
Cfr13I GGNCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
CspCI CAANNNNNGTGG 2 cut(s) 2377, 2412
DraIII CACNNNGTG 1 cut(s) 1835
EaeI YGGCCR 5 cut(s) 976, 2932, 3774, 3819, 3969
Eam1104I CTCTTC 5 cut(s) 40, 435, 796, 1815, 4004
EarI CTCTTC 5 cut(s) 40, 435, 796, 1815, 4004
Ecl136II GAGCTC 2 cut(s) 1429, 3942
Eco105I TACGTA 1 cut(s) 1625
Eco130I CCWWGG 7 cut(s) 151, 1213, 1983, 2184, 3777, 3861, 3916
Eco147I AGGCCT 1 cut(s) 3143
Eco24I GRGCYC 2 cut(s) 1431, 3944
Eco32I GATATC 3 cut(s) 925, 2244, 2521
Eco47I GGWCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
Eco53kI GAGCTC 2 cut(s) 1429, 3942
Eco57I CTGAAG 5 cut(s) 663, 888, 1220, 2549, 3294
EcoICRI GAGCTC 2 cut(s) 1429, 3942
EcoNI CCTNNNNNAGG 2 cut(s) 3027, 3837
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 1376
EcoRII CCWGG 9 cut(s) 556, 1458, 2599, 2929, 3121, 3244, 3412, 3657, 4018
EcoRV GATATC 3 cut(s) 925, 2244, 2521
EcoT14I CCWWGG 7 cut(s) 151, 1213, 1983, 2184, 3777, 3861, 3916
EcoT38I GRGCYC 2 cut(s) 1431, 3944
ErhI CCWWGG 7 cut(s) 151, 1213, 1983, 2184, 3777, 3861, 3916
Esp3I CGTCTC 1 cut(s) 18
FalI AAGNNNNNCTT 6 cut(s) 2899, 2931, 3309, 3341, 3464, 3496
FaqI GGGAC 5 cut(s) 537, 641, 1002, 3216, 4050
FauI CCCGC 1 cut(s) 758
FauNDI CATATG 1 cut(s) 1441
FblI GTMKAC 1 cut(s) 3912
FriOI GRGCYC 2 cut(s) 1431, 3944
FspBI CTAG 6 cut(s) 914, 920, 1763, 2127, 2742, 3527
GlaI GCGC 3 cut(s) 1233, 1929, 3707
GsaI CCCAGC 3 cut(s) 2640, 3463, 3738
GsuI CTGGAG 3 cut(s) 809, 2406, 3192
HapII CCGG 3 cut(s) 1978, 2528, 2679
HhaI GCGC 3 cut(s) 1234, 1930, 3708
Hin1I GRCGYC 1 cut(s) 27
Hin6I GCGC 3 cut(s) 1232, 1928, 3706
HinP1I GCGC 3 cut(s) 1232, 1928, 3706
HincII GTYRAC 3 cut(s) 2418, 2949, 3621
HindII GTYRAC 3 cut(s) 2418, 2949, 3621
HindIII AAGCTT 1 cut(s) 1515
HinfI GANTC 8 cut(s) 56, 188, 2088, 2378, 2625, 2801, 2912, 3356
HpaII CCGG 3 cut(s) 1978, 2528, 2679
HphI GGTGA 5 cut(s) 167, 364, 959, 1726, 3107
HpyCH4IV ACGT 3 cut(s) 27, 1624, 3532
HpySE526I ACGT 3 cut(s) 27, 1624, 3532
Hsp92I GRCGYC 1 cut(s) 27
HspAI GCGC 3 cut(s) 1232, 1928, 3706
LguI GCTCTTC 1 cut(s) 40
LmnI GCTCC 6 cut(s) 4, 227, 414, 1917, 2152, 2588
MaeI CTAG 6 cut(s) 914, 920, 1763, 2127, 2742, 3527
MaeII ACGT 3 cut(s) 27, 1624, 3532
MaeIII GTNAC 7 cut(s) 214, 954, 1084, 1134, 2753, 3298, 4077
MbiI CCGCTC 2 cut(s) 33, 409
MfeI CAATTG 4 cut(s) 2889, 2973, 3670, 4233
MflI RGATCY 2 cut(s) 3613, 4059
MhlI GDGCHC 4 cut(s) 1110, 1268, 1431, 3944
MlsI TGGCCA 5 cut(s) 978, 2934, 3776, 3821, 3971
MluNI TGGCCA 5 cut(s) 978, 2934, 3776, 3821, 3971
MlyI GAGTC 4 cut(s) 50, 197, 2634, 2810
MmeI TCCRAC 3 cut(s) 745, 1382, 2385
Mox20I TGGCCA 5 cut(s) 978, 2934, 3776, 3821, 3971
MroXI GAANNNNTTC 1 cut(s) 2138
MscI TGGCCA 5 cut(s) 978, 2934, 3776, 3821, 3971
MslI CAYNNNNRTG 4 cut(s) 848, 1951, 3481, 3542
Msp20I TGGCCA 5 cut(s) 978, 2934, 3776, 3821, 3971
MspA1I CMGCKG 6 cut(s) 88, 753, 866, 2426, 2569, 3050
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 3 cut(s) 1978, 2528, 2679
MspR9I CCNGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
MunI CAATTG 4 cut(s) 2889, 2973, 3670, 4233
Mva1269I GAATGC 3 cut(s) 495, 1766, 2925
MvaI CCWGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
MvnI CGCG 1 cut(s) 3723
NcoI CCATGG 3 cut(s) 1213, 1983, 3777
NdeI CATATG 1 cut(s) 1441
NlaIV GGNNCC 3 cut(s) 553, 1018, 3634
NmuCI GTSAC 3 cut(s) 1084, 1134, 4077
NspI RCATGY 1 cut(s) 3480
NspV TTCGAA 2 cut(s) 1245, 2345
PaeI GCATGC 1 cut(s) 3480
PagI TCATGA 1 cut(s) 3543
PasI CCCWGGG 1 cut(s) 557
PceI AGGCCT 1 cut(s) 3143
PciSI GCTCTTC 1 cut(s) 40
PctI GAATGC 3 cut(s) 495, 1766, 2925
PdmI GAANNNNTTC 1 cut(s) 2138
PfeI GAWTC 4 cut(s) 2088, 2378, 2912, 3356
PflMI CCANNNNNTGG 2 cut(s) 563, 4074
PleI GAGTC 4 cut(s) 50, 196, 2633, 2809
PpsI GAGTC 4 cut(s) 50, 196, 2633, 2809
Ppu21I YACGTR 1 cut(s) 1625
PpuMI RGGWCCY 1 cut(s) 135
PshBI ATTAAT 1 cut(s) 3600
PsiI TTATAA 2 cut(s) 1859, 3351
Psp124BI GAGCTC 2 cut(s) 1431, 3944
Psp5II RGGWCCY 1 cut(s) 135
Psp6I CCWGG 9 cut(s) 556, 1458, 2599, 2929, 3121, 3244, 3412, 3657, 4018
PspFI CCCAGC 3 cut(s) 2636, 3459, 3734
PspGI CCWGG 9 cut(s) 556, 1458, 2599, 2929, 3121, 3244, 3412, 3657, 4018
PspN4I GGNNCC 3 cut(s) 553, 1018, 3634
PspPI GGNCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
PspPPI RGGWCCY 1 cut(s) 135
PstI CTGCAG 3 cut(s) 93, 196, 932
PstNI CAGNNNCTG 2 cut(s) 1154, 3616
PsuI RGATCY 2 cut(s) 3613, 4059
PvuII CAGCTG 5 cut(s) 88, 866, 2426, 2569, 3050
RseI CAYNNNNRTG 4 cut(s) 848, 1951, 3481, 3542
SacI GAGCTC 2 cut(s) 1431, 3944
SapI GCTCTTC 1 cut(s) 40
Sau96I GGNCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
ScaI AGTACT 1 cut(s) 2022
SchI GAGTC 4 cut(s) 50, 197, 2634, 2810
ScrFI CCNGG 9 cut(s) 558, 1460, 2601, 2931, 3123, 3246, 3414, 3659, 4020
SduI GDGCHC 4 cut(s) 1110, 1268, 1431, 3944
SfcI CTRYAG 7 cut(s) 89, 192, 296, 928, 1094, 1295, 2247
SfuI TTCGAA 2 cut(s) 1245, 2345
SinI GGWCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
SmiMI CAYNNNNRTG 4 cut(s) 848, 1951, 3481, 3542
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SnaBI TACGTA 1 cut(s) 1625
SpeI ACTAGT 1 cut(s) 2126
SphI GCATGC 1 cut(s) 3480
SseBI AGGCCT 1 cut(s) 3143
SsiI CCGC 5 cut(s) 31, 407, 751, 1841, 3721
SspI AATATT 4 cut(s) 3009, 3230, 3654, 3966
SspMI CTAG 6 cut(s) 914, 920, 1763, 2127, 2742, 3527
SstI GAGCTC 2 cut(s) 1431, 3944
StuI AGGCCT 1 cut(s) 3143
StyD4I CCNGG 9 cut(s) 556, 1458, 2599, 2929, 3121, 3244, 3412, 3657, 4018
StyI CCWWGG 7 cut(s) 151, 1213, 1983, 2184, 3777, 3861, 3916
TaiI ACGT 3 cut(s) 30, 1627, 3535
TaqII GACCGA 2 cut(s) 1004, 4039
TatI WGTACW 6 cut(s) 2020, 2508, 3639, 3741, 3893, 3903
TauI GCSGC 2 cut(s) 409, 1844
TfiI GAWTC 4 cut(s) 2088, 2378, 2912, 3356
TseFI GTSAC 3 cut(s) 1084, 1134, 4077
Tsp45I GTSAC 3 cut(s) 1084, 1134, 4077
Van91I CCANNNNNTGG 2 cut(s) 563, 4074
Vha464I CTTAAG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 1106
VpaK11BI GGWCC 7 cut(s) 135, 551, 1016, 1217, 1980, 3633, 4022
VspI ATTAAT 1 cut(s) 3600
XagI CCTNNNNNAGG 2 cut(s) 3027, 3837
XapI RAATTY 8 cut(s) 364, 1376, 1552, 1818, 2196, 2864, 4029, 4276
XceI RCATGY 1 cut(s) 3480
XcmI CCANNNNNNNNNTGG 3 cut(s) 580, 1744, 3456
XmiI GTMKAC 1 cut(s) 3912
XmnI GAANNNNTTC 1 cut(s) 2138
XspI CTAG 6 cut(s) 914, 920, 1763, 2127, 2742, 3527
ZraI GACGTC 1 cut(s) 28
ZrmI AGTACT 1 cut(s) 2022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.