FvH4_6g49431

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000472
Physical Location & Seq
Forward (+)
37033361 .. 37040964
7604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49431.t1

Sequence Viewer

Length: 4311 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACCTCTTTTCATCAGCATGCATCAAGTTTCAGGAGCACTTCAGATGTCAGATCCATGAAAGAGAATGATGACGATGAAGTTGAGTTGCAGTGGGCTGCCATTGAAAGATTGCCCACTTTTGAACGTATTCGAACTTCACTCTTCAGCTGTAACAAAGAGAACGATGATTATGAAGGTAAGAGTAAGAGGGCAGTTGATGTTACCAAGCTAGCAGCCATGGAACGTCGTGTATTCATTGATAAACTTCTCAAGGAAGTAGAAGGAGATAATCAACGTCTCTTACAGAAACTCAAAGAAAGAATAGTCAGGGTGGGACTGCAACTGCCTACTGTAGAAGTACGATATCAGAATTTGTTTGTCGAAGCAGAATGTGAAGTAGTTCAAGGAAAACCACTACCAACATTATGGAACACACTCAAAAGCTTTCTCTCTGTCATGACACAGATAATTGGATTCAAATCTGAAACATACAGACTAGAAATTCTCAAGGATGTCAGTGGCATTATCAAGCCTTCAAGGATGACTCTATTACTTGGTCCTCCAGGCTGTGGGAAAACAACCTTATTACAGGCACTTGCAGGAAAACAAAATCACTCTCTCAAGGTTCAAGGAGAAATAACCTACAATGGTTATAAACTCAACGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAGATGACTGTGAGGGAAGTATTGGATTTCTCATCTCGTTGCCAGGGCATTGGAACCAGAGCTGATATTATGAAAGAAGTTGCTAGAAGAGAGAAGCAAGCTGGTATTGTCCCAGAACCAGACATTGACACTTATATGAAGGCTATTTCAATTGAAGGGCTGAAAAAATCTCTAATGACAGACTATATAATAAAGATCCTTGGTCTCGACATTTGCGCTGATACAATTGTAGGGGATGCAATGCAAAGAGGAATTTCAGGTGGACAAAAGAAAAGACTAACAACAGGTGAGATGATGATTGGGCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGGCTAGACAGCTCCACGACATTTCAGATTGTAACTTGTTTACAGCAATTGACTCGTGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACCTTTCATCTGTTTGACGACATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGGCCTAGTGACAATGTTTTGGAGTTCTTTCAGAGTTGTGGTTTCCGTAGTCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATGACCGACCCTACAGTTATGTTAGTGTTGATAAGTTCGTAGCTATGTTTAAGGAGTTCCATGTCGGAAAAAAGCTTGAAGAGGAACTTTTCAAGCCTTTCGATCAATCTGAGAGCCATAGACATGCTTTGACATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGTCTTTCTAGAGAATGGCTTCTGATGAAGAGGAACTCATTTGTTCATGTATTCAAGTCAGTACAGCTTGTGGTTGTTGCACTAGTAACGATGACAATGTTTCTACGTACATGGATGAAAGTTGACGAGATCCATTCAAAGTACTACATGAGTTCTCTGTTTTATGCTCTACTTAGACTGCTCGTCATTGGAATTACAGAGATATCAATGACTGCCTCTAGACTTGCAGTCTTCTATAAGCAAAGAGATTTTCACTTCTATCCTGCATGGGCTTATTCTATTCCGGCTGCCATTCTAAAAATTCCATTTTCATTGCTAGATGCATTTCTTTGGACAGCCCTTACTTATTATGTGATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAAGCAATTGATTATATTGTTCCTGGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGAACTGTTGGTCTTTTCACTTTAATAGTAATGTTTCTATTTGGAGGCTTCATAATTCCAAAATCTTCACTACCTGCTTGGTTGGAATGGGGATTTTGGGTTTCTCCATTGGCCTTTGCAGAAATAGGTGCATCGATAAATGAATTTCAGGCTCCAAGGTGGCAAAAGCTTTTATCTTCCAATGTTACTATAGGGCAGCAAGCTTTAATTAATCGTGGTCTAAACTTCAATGACTACTTCTATTGGATATCCATAGGAGCTTTACTCGGATTTTGGATGGTTTTCAACCTTGGATTCACATGTGTACTCAGTTATTCAAAGTGTCCAGGTAGTTCTCGGACTATCATCTCTCATGAAAGATTCTCCCGTCTCAAGAAAAAAGAAATGTTAGATAGTTCCTGTCAAGAAAAAGAAGTAACTTGTGTAAATACTGACATAAATACTTCAGAATCTACAAACGTAGGCATGGTGTTGCCTTTTGAGCCCGTAACTATATCATTTGAGAAACTGCAATACATTATTGATACACCCCAGAAACTTAAAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGTGCATTTAGACCTGGAATTCTCACAGCTCTGATGGGAGTTAGTGGAGCGGGAAAAACAACACTGATGGATGTTCTTTCAGGAAGAAAAACTGGCGGAATTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTCCAAGAAACATATGCCAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCTCCACAGCTCACAGTAGAAGAGTCAGTAGCATACTCAGCTTGGCTACGCTTGCCATCCGATATTGATAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTGATGAAATTAAGGACGAGTTAGTTGGCATACCAGGTGGTAGTGGCATATCAATTGAACAGCGTAAACGGCTAACAATTGCAGTAGAGCTTGTTTCAAATCCATCTGTTATATTCATGGACGAACCCACGTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTTATGCGAGCTGTGAAAAATATTGTCAGTACAGGAAGGACTGTTGTATGCACTATTCATCAGCCGAGTATTGACATATTTGAAGCATTCGATGAGCTTCTATTGATGAAAAGAGGAGGACAAGTGATATACTGTGGAGAGCTGGGTGAAGATTCAAGTAAGCTTATACAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAACTACAACCCAGCAACATGGATGTTAGAAGTTACAAGTCCTTCCGCAGAAGCCAAACTTGCCTTAGATTTTGCTCAGCTCTATAGAGAATCACATCTATGCCAAAAAAACAATGACCTAGTTAGAGAATTCAGCTTTCCAGCACAAGGCACAAAGGCATTGGATTTTCCTACTCGCTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTATCCTATTGGAGAAATCCAAGATATAACCTGGGGCGATTAGCAATTACTGCTGCATCTTCTTTGATATTCGGAGCACTTTTTTGGCAAAAAGGACTGAGAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATTGGTAACTCTACCTCTGTTTTACCATTTGTCGCTTCTGAGCGCAATGTTGTATACCGGGAAAGGTTTGCTGGAATGTACTCCTCATGGGCATATTCTTTATCACAGGTGATCATTGAACTGCCCTATATATTCCTTCAAGCAGTTTTGTTTTCCACCATTACTTATCCAACCATTGGTTTCCACTGGTCACTTTACAAAGTATTCTGGTTTGTGTATGCTATGTTTTGTACACTGCTCTACTTCACTTACTTCGGTATATTGGTTGCTTCTGTGACCCCAACTTTCCAAGTAGCTTCAGTATTAGCAAGTTTCTGCTACACCATGTTCAATCTGTTCTCGGGATTCCTAATACCACAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCATGGTCCGTAAAAGGTATTCTCACTTCACAGTACGGAGATCTAAACAAGGAAATAGTACTCCGCGGGGAAGAAAAGCCTATCAGTGCCTTCTTAGAAAGCATCTACGGATACAACTATGATGATCTAGGAATCATAGGAATTGTTCTTCTAGCATATCCACTAGTTTTTGCATTTGCTTTTGCACTTGCTACAGAAAAACTTAACTTCCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1437

Amino Acids

163.15

Weight (kDa)

8.13

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 355 1.3e-15 ABC transporter
ABC2_membrane_7 PF19055 389 - 457 6.7e-06 ABC-2 type transporter
ABC2_membrane PF01061 509 - 720 2.7e-44 ABC-2 type transporter
PDR_assoc PF08370 725 - 787 7.9e-19 Plant PDR ABC transporter associated
ABC_tran PF00005 864 - 1016 8.3e-19 ABC transporter
ABC2_membrane PF01061 1161 - 1375 4.7e-57 ABC-2 type transporter
ABC2_membrane_3 PF12698 1209 - 1409 1.8e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 2095
Acc65I GGTACC 2 cut(s) 1356, 2733
AccB1I GGYRCC 2 cut(s) 1356, 2733
AccB7I CCANNNNNTGG 4 cut(s) 584, 1324, 3473, 3857
AccBSI CCGCTC 1 cut(s) 2654
AccI GTMKAC 2 cut(s) 1230, 3735
AccII CGCG 1 cut(s) 4155
AciI CCGC 5 cut(s) 2654, 2700, 3330, 4153, 4155
AclWI GGATC 5 cut(s) 81, 925, 1347, 1660, 3658
AcsI RAATTY 7 cut(s) 385, 516, 987, 1836, 2156, 2622, 3413
AcuI CTGAAG 7 cut(s) 60, 163, 1148, 1236, 2442, 3622, 3963
AfiI CCNNNNNNNGG 8 cut(s) 584, 1298, 1321, 1324, 3047, 3431, 3473, 3857
AflIII ACRYGT 1 cut(s) 2312
AhdI GACNNNNNGTC 2 cut(s) 1718, 1763
AhlI ACTAGT 2 cut(s) 1618, 4252
AjiI CACGTC 1 cut(s) 3045
AjnI CCWGG 7 cut(s) 577, 777, 1944, 2338, 2617, 2947, 3543
Alw21I GWGCWC 2 cut(s) 74, 3592
Alw26I GTCTC 6 cut(s) 317, 944, 1172, 2387, 2709, 3503
AlwI GGATC 5 cut(s) 81, 925, 1347, 1660, 3658
AlwNI CAGNNNCTG 1 cut(s) 2018
Ama87I CYCGRG 1 cut(s) 4021
AoxI GGCC 3 cut(s) 1037, 1238, 2124
ApeKI GCWGC 8 cut(s) 11, 131, 248, 1823, 2209, 3065, 3068, 3566
ApoI RAATTY 7 cut(s) 385, 516, 987, 1836, 2156, 2622, 3413
AseI ATTAAT 1 cut(s) 2223
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1554, 2002, 2898
Asp718I GGTACC 2 cut(s) 1356, 2733
AspLEI GCGC 2 cut(s) 953, 3726
AspS9I GGNCC 6 cut(s) 36, 572, 1037, 1238, 1993, 4095
AsuC2I CCSGG 1 cut(s) 3740
AsuHPI GGTGA 4 cut(s) 1034, 3233, 3635, 3802
AsuII TTCGAA 1 cut(s) 166
AsuNHI GCTAGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 4021
AvaII GGWCC 4 cut(s) 36, 572, 1993, 4095
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanI GGYRCC 2 cut(s) 1356, 2733
BanII GRGCYC 1 cut(s) 2499
BarI GAAGNNNNNNTAC 4 cut(s) 154, 186, 4099, 4131
BauI CACGAG 1 cut(s) 1128
BbsI GAAGAC 2 cut(s) 701, 1759
Bbv12I GWGCWC 2 cut(s) 74, 3592
BbvI GCAGC 7 cut(s) 118, 260, 1810, 2221, 3055, 3077, 3553
BccI CCATC 7 cut(s) 1204, 2284, 2632, 2665, 2860, 3025, 3471
BceAI ACGGC 1 cut(s) 2999
BcgI CGANNNNNNTGC 2 cut(s) 1109, 1143
BciT130I CCWGG 7 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545
BciVI GTATCC 1 cut(s) 4193
BclI TGATCA 1 cut(s) 3792
BcnI CCSGG 1 cut(s) 3740
BcoDI GTCTC 6 cut(s) 317, 944, 1172, 2387, 2709, 3503
BcuI ACTAGT 2 cut(s) 1618, 4252
BfmI CTRYAG 7 cut(s) 12, 366, 1372, 2202, 2582, 3367, 4281
BfuAI ACCTGC 1 cut(s) 2095
BfuI GTATCC 1 cut(s) 4193
BglII AGATCT 1 cut(s) 4129
BisI GCNGC 8 cut(s) 12, 132, 249, 1824, 2210, 3066, 3069, 3567
BlpI GCTNAGC 1 cut(s) 3360
BlsI GCNGC 8 cut(s) 13, 133, 250, 1825, 2211, 3067, 3070, 3568
BmcAI AGTACT 4 cut(s) 1352, 1679, 2898, 4149
Bme1390I CCNGG 8 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545, 3740
Bme18I GGWCC 4 cut(s) 36, 572, 1993, 4095
BmeRI GACNNNNNGTC 2 cut(s) 1718, 1763
BmeT110I CYCGRG 1 cut(s) 4021
BmgBI CACGTC 1 cut(s) 3045
BmgT120I GGNCC 6 cut(s) 36, 572, 1037, 1238, 1993, 4095
BmiI GGNNCC 5 cut(s) 790, 1358, 2166, 2735, 3270
BmrFI CCNGG 8 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545, 3740
BmsI GCATC 9 cut(s) 65, 961, 1846, 1960, 1994, 2153, 3046, 3578, 4200
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 701, 1759
BplI GAGNNNNNCTC 2 cut(s) 2262, 2294
BpmI CTGGAG 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 3360
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 4 cut(s) 269, 506, 620, 2369
BpuMI CCSGG 1 cut(s) 3740
Bsa29I ATCGAT 1 cut(s) 2147
BsaAI YACGTR 1 cut(s) 1643
BsaBI GATNNNNATC 1 cut(s) 493
BsaI GGTCTC 2 cut(s) 944, 1172
BsaJI CCNNGG 9 cut(s) 252, 778, 934, 1234, 1989, 2168, 2302, 3544, 4153
BsaXI ACNNNNNCTCC 2 cut(s) 3183, 3213
Bsc4I CCNNNNNNNGG 8 cut(s) 584, 1298, 1321, 1324, 3047, 3431, 3473, 3857
Bse1I ACTGG 5 cut(s) 1358, 2608, 2701, 3872, 4079
Bse3DI GCAATG 3 cut(s) 981, 1847, 3733
Bse8I GATNNNNATC 1 cut(s) 493
BseBI CCWGG 7 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545
BseCI ATCGAT 1 cut(s) 2147
BseDI CCNNGG 9 cut(s) 252, 778, 934, 1234, 1989, 2168, 2302, 3544, 4153
BseJI GATNNNNATC 1 cut(s) 493
BseLI CCNNNNNNNGG 8 cut(s) 584, 1298, 1321, 1324, 3047, 3431, 3473, 3857
BseMI GCAATG 3 cut(s) 981, 1847, 3733
BseNI ACTGG 5 cut(s) 1358, 2608, 2701, 3872, 4079
BseRI GAGGAG 2 cut(s) 3204, 3754
BseXI GCAGC 7 cut(s) 118, 260, 1810, 2221, 3055, 3077, 3553
BseYI CCCAGC 2 cut(s) 3217, 3295
Bsh1236I CGCG 1 cut(s) 4155
BshFI GGCC 3 cut(s) 1039, 1240, 2126
BshNI GGYRCC 2 cut(s) 1356, 2733
BshVI ATCGAT 1 cut(s) 2147
BsiHKAI GWGCWC 2 cut(s) 74, 3592
BsiHKCI CYCGRG 1 cut(s) 4021
BsiSI CCGG 2 cut(s) 1820, 3739
BslFI GGGAC 2 cut(s) 363, 830
BslI CCNNNNNNNGG 8 cut(s) 584, 1298, 1321, 1324, 3047, 3431, 3473, 3857
BsmAI GTCTC 6 cut(s) 317, 944, 1172, 2387, 2709, 3503
BsmBI CGTCTC 2 cut(s) 317, 2387
BsmFI GGGAC 2 cut(s) 363, 830
BsmI GAATGC 2 cut(s) 3161, 3642
BsnI GGCC 3 cut(s) 1039, 1240, 2126
Bso31I GGTCTC 2 cut(s) 944, 1172
BsoBI CYCGRG 1 cut(s) 4021
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 3 cut(s) 74, 2499, 3592
Bsp1407I TGTACA 1 cut(s) 3911
Bsp143I GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
Bsp1720I GCTNAGC 1 cut(s) 3360
Bsp19I CCATGG 2 cut(s) 252, 1234
BspACI CCGC 5 cut(s) 2654, 2700, 3330, 4153, 4155
BspANI GGCC 3 cut(s) 1039, 1240, 2126
BspDI ATCGAT 1 cut(s) 2147
BspFNI CGCG 1 cut(s) 4155
BspHI TCATGA 2 cut(s) 471, 2365
BspLI GGNNCC 5 cut(s) 790, 1358, 2166, 2735, 3270
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 2095
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 5 cut(s) 81, 925, 1347, 1660, 3658
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 2 cut(s) 1356, 2733
BspTNI GGTCTC 2 cut(s) 944, 1172
BsrBI CCGCTC 1 cut(s) 2654
BsrDI GCAATG 3 cut(s) 981, 1847, 3733
BsrGI TGTACA 1 cut(s) 3911
BsrI ACTGG 5 cut(s) 1358, 2608, 2701, 3872, 4079
BssECI CCNNGG 9 cut(s) 252, 778, 934, 1234, 1989, 2168, 2302, 3544, 4153
BssMI GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
BssNAI GTATAC 2 cut(s) 1231, 3736
BssSI CACGAG 1 cut(s) 1128
BssT1I CCWWGG 6 cut(s) 252, 934, 1234, 1989, 2168, 2302
Bst1107I GTATAC 2 cut(s) 1231, 3736
Bst2BI CACGAG 1 cut(s) 1128
Bst2UI CCWGG 7 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545
Bst4CI ACNGT 9 cut(s) 367, 745, 1376, 1901, 2020, 2812, 3118, 3209, 4122
Bst6I CTCTTC 5 cut(s) 182, 817, 1434, 1559, 2811
BstAPI GCANNNNNTGC 1 cut(s) 3563
BstAUI TGTACA 1 cut(s) 3911
BstBAI YACGTR 1 cut(s) 1643
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 8 cut(s) 54, 246, 834, 1041, 2214, 2780, 2849, 3084
BstDSI CCRYGG 3 cut(s) 252, 1234, 4153
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstFNI CGCG 1 cut(s) 4155
BstHHI GCGC 2 cut(s) 953, 3726
BstKTI GATC 9 cut(s) 89, 933, 1342, 1465, 1668, 3653, 3795, 4132, 4216
BstMAI GTCTC 6 cut(s) 317, 944, 1172, 2387, 2709, 3503
BstMBI GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
BstMWI GCNNNNNNNGC 7 cut(s) 2494, 2834, 2848, 2983, 3065, 3344, 3563
BstNI CCWGG 7 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545
BstNSI RCATGY 5 cut(s) 56, 1487, 1539, 2316, 3498
BstSCI CCNGG 8 cut(s) 577, 777, 1944, 2338, 2617, 2947, 3543, 3738
BstSFI CTRYAG 7 cut(s) 12, 366, 1372, 2202, 2582, 3367, 4281
BstSNI TACGTA 1 cut(s) 1643
BstUI CGCG 1 cut(s) 4155
BstV1I GCAGC 7 cut(s) 118, 260, 1810, 2221, 3055, 3077, 3553
BstV2I GAAGAC 2 cut(s) 701, 1759
BstX2I RGATCY 4 cut(s) 86, 930, 1665, 4129
BstXI CCANNNNNNTGG 4 cut(s) 441, 785, 1150, 3303
BstYI RGATCY 4 cut(s) 86, 930, 1665, 4129
BstZ17I GTATAC 2 cut(s) 1231, 3736
Bsu15I ATCGAT 1 cut(s) 2147
BsuI GTATCC 1 cut(s) 4193
BsuRI GGCC 3 cut(s) 1039, 1240, 2126
BsuTUI ATCGAT 1 cut(s) 2147
BtgI CCRYGG 3 cut(s) 252, 1234, 4153
BtrI CACGTC 1 cut(s) 3045
BtsI GCAGTG 2 cut(s) 131, 3914
BtsIMutI CAGTG 7 cut(s) 131, 538, 1508, 2666, 3865, 3914, 4180
BveI ACCTGC 1 cut(s) 2095
Cac8I GCNNGC 8 cut(s) 54, 246, 834, 1041, 2214, 2780, 2849, 3084
CaiI CAGNNNCTG 1 cut(s) 2018
CciI TCATGA 2 cut(s) 471, 2365
CfoI GCGC 2 cut(s) 953, 3726
Cfr13I GGNCC 6 cut(s) 36, 572, 1037, 1238, 1993, 4095
Cfr42I CCGCGG 1 cut(s) 4156
ClaI ATCGAT 1 cut(s) 2147
CsiI ACCWGGT 1 cut(s) 2947
DpnI GATC 9 cut(s) 88, 932, 1341, 1464, 1667, 3652, 3794, 4131, 4215
DpnII GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
DraI TTTAAA 1 cut(s) 3490
DriI GACNNNNNGTC 2 cut(s) 1718, 1763
Eam1104I CTCTTC 5 cut(s) 182, 817, 1434, 1559, 2811
Eam1105I GACNNNNNGTC 2 cut(s) 1718, 1763
EarI CTCTTC 5 cut(s) 182, 817, 1434, 1559, 2811
EciI GGCGGA 1 cut(s) 2715
Eco105I TACGTA 1 cut(s) 1643
Eco130I CCWWGG 6 cut(s) 252, 934, 1234, 1989, 2168, 2302
Eco24I GRGCYC 1 cut(s) 2499
Eco31I GGTCTC 2 cut(s) 944, 1172
Eco32I GATATC 4 cut(s) 380, 1068, 1740, 2262
Eco47I GGWCC 4 cut(s) 36, 572, 1993, 4095
Eco57I CTGAAG 7 cut(s) 60, 163, 1148, 1236, 2442, 3622, 3963
Eco88I CYCGRG 1 cut(s) 4021
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoO109I RGGNCCY 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 2622, 3413
EcoRII CCWGG 7 cut(s) 577, 777, 1944, 2338, 2617, 2947, 3543
EcoRV GATATC 4 cut(s) 380, 1068, 1740, 2262
EcoT14I CCWWGG 6 cut(s) 252, 934, 1234, 1989, 2168, 2302
EcoT22I ATGCAT 3 cut(s) 58, 1861, 3677
EcoT38I GRGCYC 1 cut(s) 2499
ErhI CCWWGG 6 cut(s) 252, 934, 1234, 1989, 2168, 2302
Esp3I CGTCTC 2 cut(s) 317, 2387
FalI AAGNNNNNCTT 8 cut(s) 1431, 1463, 1524, 1556, 2883, 2915, 3327, 3359
FaqI GGGAC 2 cut(s) 363, 830
FauI CCCGC 2 cut(s) 2647, 4148
FauNDI CATATG 1 cut(s) 2755
FbaI TGATCA 1 cut(s) 3792
FblI GTMKAC 2 cut(s) 1230, 3735
Fnu4HI GCNGC 8 cut(s) 12, 132, 249, 1824, 2210, 3066, 3069, 3567
FriOI GRGCYC 1 cut(s) 2499
Fsp4HI GCNGC 8 cut(s) 12, 132, 249, 1824, 2210, 3066, 3069, 3567
GlaI GCGC 2 cut(s) 952, 3725
GluI GCNGC 8 cut(s) 12, 132, 249, 1824, 2210, 3066, 3069, 3567
GsaI CCCAGC 2 cut(s) 3221, 3299
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 1039, 1240, 2126
HapII CCGG 2 cut(s) 1820, 3739
HhaI GCGC 2 cut(s) 953, 3726
Hin6I GCGC 2 cut(s) 951, 3724
HinP1I GCGC 2 cut(s) 951, 3724
HincII GTYRAC 1 cut(s) 1660
HindII GTYRAC 1 cut(s) 1660
HindIII AAGCTT 5 cut(s) 457, 1433, 2180, 2214, 3236
HpaII CCGG 2 cut(s) 1820, 3739
HphI GGTGA 4 cut(s) 1034, 3233, 3635, 3802
Hpy99I CGWCG 1 cut(s) 264
HpyCH4III ACNGT 9 cut(s) 367, 745, 1376, 1901, 2020, 2812, 3118, 3209, 4122
HpyCH4IV ACGT 6 cut(s) 160, 259, 310, 1642, 2472, 3044
HpyF10VI GCNNNNNNNGC 7 cut(s) 2494, 2834, 2848, 2983, 3065, 3344, 3563
HpySE526I ACGT 6 cut(s) 160, 259, 310, 1642, 2472, 3044
HspAI GCGC 2 cut(s) 951, 3724
KpnI GGTACC 2 cut(s) 1360, 2737
Ksp22I TGATCA 1 cut(s) 3792
KspI CCGCGG 1 cut(s) 4156
Kzo9I GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
LmnI GCTCC 7 cut(s) 69, 1091, 2170, 2270, 2651, 3481, 3587
Lsp1109I GCAGC 7 cut(s) 118, 260, 1810, 2221, 3055, 3077, 3553
LweI GCATC 9 cut(s) 65, 961, 1846, 1960, 1994, 2153, 3046, 3578, 4200
MabI ACCWGGT 1 cut(s) 2947
MaeII ACGT 6 cut(s) 160, 259, 310, 1642, 2472, 3044
MalI GATC 9 cut(s) 88, 932, 1341, 1464, 1667, 3652, 3794, 4131, 4215
MbiI CCGCTC 1 cut(s) 2654
MboI GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
MfeI CAATTG 6 cut(s) 885, 960, 1121, 1928, 2967, 2991
MflI RGATCY 4 cut(s) 86, 930, 1665, 4129
MhlI GDGCHC 3 cut(s) 74, 2499, 3592
MlyI GAGTC 3 cut(s) 553, 1120, 2828
MmeI TCCRAC 3 cut(s) 1405, 2076, 3875
Mph1103I ATGCAT 3 cut(s) 58, 1861, 3677
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1554, 2002, 2898
MseI TTAA 8 cut(s) 1410, 2036, 2219, 2223, 2553, 2925, 3489, 4293
MslI CAYNNNNRTG 4 cut(s) 51, 869, 1482, 3382
MspA1I CMGCKG 3 cut(s) 183, 3068, 4155
MspI CCGG 2 cut(s) 1820, 3739
MspR9I CCNGG 8 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545, 3740
MunI CAATTG 6 cut(s) 885, 960, 1121, 1928, 2967, 2991
Mva1269I GAATGC 2 cut(s) 3161, 3642
MvaI CCWGG 7 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545
MvnI CGCG 1 cut(s) 4155
MwoI GCNNNNNNNGC 7 cut(s) 2494, 2834, 2848, 2983, 3065, 3344, 3563
NciI CCSGG 1 cut(s) 3740
NcoI CCATGG 2 cut(s) 252, 1234
NdeI CATATG 1 cut(s) 2755
NdeII GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
NheI GCTAGC 1 cut(s) 244
NlaIV GGNNCC 5 cut(s) 790, 1358, 2166, 2735, 3270
NmeAIII GCCGAG 1 cut(s) 3165
NmuCI GTSAC 4 cut(s) 1244, 2786, 3870, 3955
NsiI ATGCAT 3 cut(s) 58, 1861, 3677
NspI RCATGY 5 cut(s) 56, 1487, 1539, 2316, 3498
NspV TTCGAA 1 cut(s) 166
PacI TTAATTAA 1 cut(s) 2223
PaeI GCATGC 1 cut(s) 56
PagI TCATGA 2 cut(s) 471, 2365
PciI ACATGT 1 cut(s) 2312
PctI GAATGC 2 cut(s) 3161, 3642
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1554, 2002, 2898
PfeI GAWTC 9 cut(s) 489, 1139, 2307, 2373, 2462, 3227, 3374, 4026, 4221
PflMI CCANNNNNTGG 4 cut(s) 584, 1324, 3473, 3857
PkrI GCNGC 8 cut(s) 13, 133, 250, 1825, 2211, 3067, 3070, 3568
PleI GAGTC 3 cut(s) 553, 1120, 2827
PpsI GAGTC 3 cut(s) 553, 1120, 2827
Ppu21I YACGTR 1 cut(s) 1643
PpuMI RGGWCCY 1 cut(s) 36
PscI ACATGT 1 cut(s) 2312
PshBI ATTAAT 1 cut(s) 2223
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 7 cut(s) 577, 777, 1944, 2338, 2617, 2947, 3543
PspFI CCCAGC 2 cut(s) 3217, 3295
PspGI CCWGG 7 cut(s) 577, 777, 1944, 2338, 2617, 2947, 3543
PspN4I GGNNCC 5 cut(s) 790, 1358, 2166, 2735, 3270
PspPI GGNCC 6 cut(s) 36, 572, 1037, 1238, 1993, 4095
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 2018
PsuI RGATCY 4 cut(s) 86, 930, 1665, 4129
PvuII CAGCTG 2 cut(s) 183, 3068
RseI CAYNNNNRTG 4 cut(s) 51, 869, 1482, 3382
SacII CCGCGG 1 cut(s) 4156
SaqAI TTAA 8 cut(s) 1410, 2036, 2219, 2223, 2553, 2925, 3489, 4293
SatI GCNGC 8 cut(s) 12, 132, 249, 1824, 2210, 3066, 3069, 3567
Sau3AI GATC 9 cut(s) 86, 930, 1339, 1462, 1665, 3650, 3792, 4129, 4213
Sau96I GGNCC 6 cut(s) 36, 572, 1037, 1238, 1993, 4095
ScaI AGTACT 4 cut(s) 1352, 1679, 2898, 4149
SchI GAGTC 3 cut(s) 553, 1120, 2828
ScrFI CCNGG 8 cut(s) 579, 779, 1946, 2340, 2619, 2949, 3545, 3740
SduI GDGCHC 3 cut(s) 74, 2499, 3592
SexAI ACCWGGT 1 cut(s) 2947
SfaNI GCATC 9 cut(s) 65, 961, 1846, 1960, 1994, 2153, 3046, 3578, 4200
SfcI CTRYAG 7 cut(s) 12, 366, 1372, 2202, 2582, 3367, 4281
Sfr303I CCGCGG 1 cut(s) 4156
SfuI TTCGAA 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 4156
SinI GGWCC 4 cut(s) 36, 572, 1993, 4095
SmiMI CAYNNNNRTG 4 cut(s) 51, 869, 1482, 3382
SmlI CTYRAG 4 cut(s) 284, 521, 635, 2384
SmoI CTYRAG 4 cut(s) 284, 521, 635, 2384
SnaBI TACGTA 1 cut(s) 1643
SpeI ACTAGT 2 cut(s) 1618, 4252
SphI GCATGC 1 cut(s) 56
SsiI CCGC 5 cut(s) 2654, 2700, 3330, 4153, 4155
SspI AATATT 2 cut(s) 3097, 3657
StyD4I CCNGG 8 cut(s) 577, 777, 1944, 2338, 2617, 2947, 3543, 3738
StyI CCWWGG 6 cut(s) 252, 934, 1234, 1989, 2168, 2302
TaaI ACNGT 9 cut(s) 367, 745, 1376, 1901, 2020, 2812, 3118, 3209, 4122
TaiI ACGT 6 cut(s) 163, 262, 313, 1645, 2475, 3047
TaqI TCGA 7 cut(s) 166, 396, 942, 1461, 2147, 2578, 3165
TaqII GACCGA 1 cut(s) 1380
TatI WGTACW 9 cut(s) 1350, 1597, 1677, 2317, 2896, 3104, 3759, 3911, 4147
TfiI GAWTC 9 cut(s) 489, 1139, 2307, 2373, 2462, 3227, 3374, 4026, 4221
Tru1I TTAA 8 cut(s) 1410, 2036, 2219, 2223, 2553, 2925, 3489, 4293
Tru9I TTAA 8 cut(s) 1410, 2036, 2219, 2223, 2553, 2925, 3489, 4293
TscAI CASTG 7 cut(s) 131, 538, 1515, 2673, 3872, 3921, 4180
TseFI GTSAC 4 cut(s) 1244, 2786, 3870, 3955
TseI GCWGC 8 cut(s) 11, 131, 248, 1823, 2209, 3065, 3068, 3566
Tsp45I GTSAC 4 cut(s) 1244, 2786, 3870, 3955
TspGWI ACGGA 4 cut(s) 1271, 4087, 4140, 4212
TspRI CASTG 7 cut(s) 131, 538, 1515, 2673, 3872, 3921, 4180
Van91I CCANNNNNTGG 4 cut(s) 584, 1324, 3473, 3857
VpaK11BI GGWCC 4 cut(s) 36, 572, 1993, 4095
VspI ATTAAT 1 cut(s) 2223
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 7 cut(s) 385, 516, 987, 1836, 2156, 2622, 3413
XbaI TCTAGA 2 cut(s) 1544, 1754
XceI RCATGY 5 cut(s) 56, 1487, 1539, 2316, 3498
XcmI CCANNNNNNNNNTGG 1 cut(s) 3474
XmiI GTMKAC 2 cut(s) 1230, 3735
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1554, 2002, 2898
ZrmI AGTACT 4 cut(s) 1352, 1679, 2898, 4149
Zsp2I ATGCAT 3 cut(s) 58, 1861, 3677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.