Prupe.3G273300_v2.0.a1

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000472
Physical Location & Seq
Forward (+)
25295804 .. 25303394
7591 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G273300.1

Sequence Viewer

Length: 4161 bp
ATGGATTTGGCAGCAGAGATAGGAAGAAGCGTGAGGACCTCTTTTCATCAACATGCATCGAGTTTCAGGAGCACTTCAGACGTCAGATCCATCAACGACAACAACGACGACGAAACTGAGTTGCAGTGGGCTGCAATCCAACGGTTGCCCACATTTGAACGACTTACTGATGAGCAAGATAACAATGGAGGAGGTACTATTACTAAGAGGGTGGTTGATGTCACAAAGCTAGGAGCTCTCGAACGCCACGTGTTCATTGAGAAACTTGTCAAGGATATTGAGGGATATAACCGCCGTCTGTTGCAGAAACTCAAACAAAGAATAGACAGGGTGGGATTGCAATTACCGACTGTGGAAGTTGGATACCAAAATTTGGTTGTAGAGGCAGAATGCGAAGTGGTTCAAGGAAAACCCATCCCAACGCTATGGACCGCCCTCAAAAGCATACTCTGTGGTATAACACAGATAATTGGTTGCAAGCCTCAAGCATACAAATTAGAGATTCTCAAAGGTGTCAGTGGCATCATCAAGCCATCAAGGATGACTCTATTGCTTGGCCCTCCAGGCTGTGGGAAGACCACTTTCTTACAGGCACTTGCTGGGAAACTTAACCACTCTCTCAAGGTCCGAGGAGAAATTACCTACAATGGTTACAAGTTCAATGAGTTTGTTCCTCAGAAGACATCAGCTTATATAAGTCAATATGACTTGCACATTCCTGAGCTGACTGTGAGGGAAGCACTCGACTTCTCAGCACGTTGCCAGGGTATTGGAAACAGAGCAGATATAATGAAAGAAGTCAGCAGAAGGGAGAAGCAATCAGGAATTGTCCCAGAACCAGACATTGACACTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAACTCCCTCCAGACTGACTATATAATGAAGATTCTTGGGCTAGACATTTGTGCTGATACAATCGTAGGCGACGCAATGCAAAGAGGAATTTCGGGTGGTCAGAAGAAAAGACTGACAACAGGGGAAATGATGATTGGTCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGCTTAGATAGTTCCACTACCCTTCAGATTGTTACTTGTTTGCAGCAACTGACACACGTAACAGACTCCACCATTTTGGTATCACTTCTTCAGCCAACACCGGAGACCTTCGCTCTCTTTGATGACATTATCTTGATAGGAAAAGTTGTGTATCATGGGCCTTGCAATAATGTTGCAGAGTTCTTTGAGCAGTGTGGTTTTCGCAGCCCACCGAGAAAAGGCATTTCTGACTTCCTGCAAGAGGTGGTTTCTCGAAAGGATCAGGCAAAGTACTGGTACCATGAAGACCAACCCTACAGTTATGTTACAGTTGACAAGTTTGTAAATATGTTCAAGGATTTTCATGTCGGAAAGAAGCTAGATGAGGAACTTCGCAAGCCTTTTGACAAATCTGAGTGCCACAAAGATGCTTTATCATTCAACATCTACTCATTAAGAAAATGGGAACTATTAAAAGCATGTACTGCTAGAGAATGGCTTCTTATGAAGCGCAACTCGTTTGTTCATGTGTTCAAGTCGGCACAGCTTGTCGTCGTTGCGCTAGTAACAATGACAGTTTTTTCACGTACATGGATGAATATTGACGATGTCCATGCAAAGTACTACATGGCTTCTTTGTTCTATGCTCTCATTAGACTGATGAGCAATGGGATTGCAGAGTTATCAATGACTGTCTCCAGACTTGCAGTCTTCTACAAGCAAAGAGATTTCTACTTTAATCCTGCATGGGCTTATTCCATTCCAGCTACCATTCTAAAGATTCCATTTTCATTGCTAGATGCTTTTCTTTGGACATCCCTTACTTATTATGTCATTGGTTACAGTCCTGAGCCCGAAAGGTTCTTCAAGCAAATCATTATTCTATTCCTTGTGCATCAAGTATCAATATCATTTTTTCGTCTGATCGCATCCTTGGTTCGAACTCCCTCTGTAGCAGCAACCATTGGTCTTTTCTCCTTAATAGTAATGTTTCTATTTGGTGGCTTCATAATTCCAAAATGTAAGGAATCTTCCTTGCCTACTTGGTTGGAGTGGGGCTTTTGGCTTTCTCCACTAACATATGGAGAAATAAGTGCTTCAGTAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCAAATGTCACTATAGGCCAGCGAGTTCTGGGAAACCGTGGTCTCAATTTCAGTGACAGCTTTTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGGTTTTCAACATTGGGTTCACCTGTGCACTCAGTTATTTAAAATGCATGGTCTTACCCTTTGAGCCCATAAGTATATCATTTCAGAATGTGCAATACTTTGTTGATACACCCAAGAAAATGAGAGAGCAAGGTTTTCCTCCACAACGACTACAGCTTCTTCAAGACATAACTGGTGCATTTAGACCTGGAATTCTTACAGCTTTGATGGGAGTTAGTGGAGCTGGAAAAACAACACTGATGGATGTCCTTTCTGGAAGAAAAACTGGTGGAAGTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTACAAGAAACATATGCCAGAATATCTGGGTATTGTGAACAAAGTGACATACATTCTCCACAGATTACAGTAGGAGAATCTGTACAATACTCGGCTTGGTTACGCTTGCCAGCGCAGATTGATAGACATACAAGATCTCAATTTGTGAAAGAAGTTCTTCAAATGATAGAGCTTGATGAAATCAAAGACGAATTAGTTGGCATATCTGGTGGTAGTGGTATATCTGCAGAGCAACGCAAAAGGCTGACAATAGCAGTAGAGCTTGTTTCAAATCCATCCATAATATTCATGGACGAACCGACCTCTGGTTTAGATGCCAGAGCAGCTGCTATAGTTATGAGAGCTGTGAAAAATATTGTCAGTACAAGGAGGACTGTTGTATGCACAATTCACCAGCCAAGTATTGACATATTTGAAGCATTCGATGAGCTTATTTTGATGAAAAGAGGAGGACAAATAATATACTACGGAGAGCTAGGCCAAAATTCAAGTAAGCTTATTGAATACTTTGAGGGTATTCCCGGGGTTCCGAAAATTAAAGAGAATTACAACCCAGCAACATGGATGTTAGAGGTCACCGGTCTTTCTGCAGAAGCTCAAATTGCCATAGATTTTGCTCATATCTATAGAGGATCACATCTATGCCAGAAGAACAACGAACTAGTTAGAGAACTCAGCTTTCCAGAACAAGGCTCAAAGGAATTACATTTTTCTACTCGCTTTCCACAAAATGGATGGGAGCAATTCAAAGCATGCCTATGGAAGCGGCATCTCTCCTACTGGAGAAGTCCGAGATATAACCTGGGGAGATTGATATTTACTGCTGCATGTTCTTTGTTATTTGGAGCACTTCTTTGGCAGAAAGGACAGAAAATAGATGGCGAACAGGAATTTTTCAACATTCTAGGATCAATGTTTGTTTTACTTCAATGCATGGGAATTGGCAATTGTTCCTCTGTTTTACCATTCATAGCTACTGAGCGCAATGTTGTATACCGAGAAAGATTTGCTGGAATGTACTCGTCGTGGGCATATTCGTTTTCACAGGTGATCATAGAAATTCCATATATATTGATACAAGCAGCTTTGTTTTCGACAATTACGTATCCAGCCATAGATTTCCAATGGTCACTCTACAAAGTATTTTGGTATTTCTATGCTATGTTTTCTACATTCCTCTACTTCAATTACTTCGGTATGTTGCTTGTTTCTCTGACCCCAACTTATCAAGTGGCTTCAGTATTGGCAAGTTTCTGCTACACTATGTTCAATTTGTTCTCGGGTTTCCTCTTACCTGGACCAAAAATTCCTGTATGGTGGGTTTGGGGATACTGGATTTGCCCTCTTGCCTGGTCCTTAAAAGGTGCTCTCACTTCACAGTATGGAGATGTAGAGAAGGAAATAGTAGTGCATGGAGAGCAAAGGACAATCAGTGCCTTCTTGGGAAGTATTTATGGGTACAACTATGATGATCTAGGAGTTGTAGCAATTGTTCTTCTTGCATATCCACTAGTTTTTGCACTTGTTTTTGCATGTGCTACAGAAAAAATAAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1387

Amino Acids

157.05

Weight (kDa)

8.41

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
Acc65I GGTACC 2 cut(s) 1335, 2583
AccB1I GGYRCC 2 cut(s) 1335, 2583
AccB7I CCANNNNNTGG 3 cut(s) 373, 569, 3323
AccI GTMKAC 1 cut(s) 3585
AciI CCGC 3 cut(s) 292, 432, 3358
AclWI GGATC 4 cut(s) 81, 1326, 3232, 3508
AcsI RAATTY 8 cut(s) 370, 972, 2147, 2472, 3076, 3482, 3651, 3897
AcuI CTGAAG 5 cut(s) 60, 1067, 1133, 2121, 3813
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 7 cut(s) 373, 569, 1277, 1300, 2897, 3281, 3323
AflIII ACRYGT 2 cut(s) 249, 1114
AgeI ACCGGT 1 cut(s) 3170
AhdI GACNNNNNGTC 1 cut(s) 1745
AhlI ACTAGT 2 cut(s) 3253, 4102
AjnI CCWGG 6 cut(s) 562, 762, 2467, 3393, 3886, 3941
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
Alw21I GWGCWC 5 cut(s) 74, 238, 2311, 3442, 3961
Alw26I GTCTC 4 cut(s) 1157, 1738, 2228, 2559
Alw44I GTGCAC 1 cut(s) 2307
AlwI GGATC 4 cut(s) 81, 1326, 3232, 3508
AlwNI CAGNNNCTG 1 cut(s) 1108
Ama87I CYCGRG 2 cut(s) 3113, 3871
AoxI GGCC 5 cut(s) 556, 861, 1217, 2197, 3070
ApaLI GTGCAC 1 cut(s) 2307
ApeKI GCWGC 9 cut(s) 11, 131, 1102, 1263, 1994, 2915, 2918, 3416, 3674
ApoI RAATTY 8 cut(s) 370, 972, 2147, 2472, 3076, 3482, 3651, 3897
AsiGI ACCGGT 1 cut(s) 3170
Asp700I GAANNNNTTC 3 cut(s) 399, 1536, 2748
Asp718I GGTACC 2 cut(s) 1335, 2583
AspLEI GCGC 4 cut(s) 1551, 1600, 2707, 3576
AspS9I GGNCC 8 cut(s) 36, 429, 557, 625, 1022, 1217, 3890, 3945
AsuC2I CCSGG 2 cut(s) 3114, 3115
AsuHPI GGTGA 4 cut(s) 2293, 2975, 3160, 3652
AsuII TTCGAA 1 cut(s) 1978
AvaI CYCGRG 2 cut(s) 3113, 3871
AvaII GGWCC 6 cut(s) 36, 429, 625, 1022, 3890, 3945
BaeGI GKGCMC 1 cut(s) 2311
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BanI GGYRCC 2 cut(s) 1335, 2583
BanII GRGCYC 3 cut(s) 238, 1893, 2349
BarI GAAGNNNNNNTAC 4 cut(s) 1131, 1163, 2053, 2085
BbrPI CACGTG 1 cut(s) 250
BbsI GAAGAC 4 cut(s) 581, 686, 1350, 1741
Bbv12I GWGCWC 5 cut(s) 74, 238, 2311, 3442, 3961
BbvI GCAGC 9 cut(s) 23, 118, 1114, 1275, 2006, 2905, 2927, 3403, 3686
BccI CCATC 9 cut(s) 98, 422, 541, 2275, 2482, 2515, 2875, 3321, 3464
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 1634, 1668
BciT130I CCWGG 6 cut(s) 564, 764, 2469, 3395, 3888, 3943
BciVI GTATCC 3 cut(s) 356, 3708, 3914
BclI TGATCA 1 cut(s) 3642
BcnI CCSGG 2 cut(s) 3114, 3115
BcoDI GTCTC 4 cut(s) 1157, 1738, 2228, 2559
BcuI ACTAGT 2 cut(s) 3253, 4102
BfmI CTRYAG 9 cut(s) 1354, 1989, 2193, 2432, 2817, 2922, 3180, 3217, 4131
BfuI GTATCC 3 cut(s) 356, 3708, 3914
BglI GCCNNNNNGGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 2726
BmcAI AGTACT 2 cut(s) 1331, 1661
Bme1390I CCNGG 8 cut(s) 564, 764, 2469, 3114, 3115, 3395, 3888, 3943
Bme18I GGWCC 6 cut(s) 36, 429, 625, 1022, 3890, 3945
BmeRI GACNNNNNGTC 1 cut(s) 1745
BmeT110I CYCGRG 2 cut(s) 3113, 3871
BmgT120I GGNCC 8 cut(s) 36, 429, 557, 625, 1022, 1217, 3890, 3945
BmiI GGNNCC 3 cut(s) 1337, 2585, 3120
BmrFI CCNGG 8 cut(s) 564, 764, 2469, 3114, 3115, 3395, 3888, 3943
BmsI GCATC 8 cut(s) 65, 531, 1456, 1828, 1942, 1976, 2896, 3370
BpiI GAAGAC 4 cut(s) 581, 686, 1350, 1741
BpmI CTGGAG 4 cut(s) 546, 878, 1720, 3394
Bpu10I CCTNAGC 2 cut(s) 720, 1887
Bpu14I TTCGAA 1 cut(s) 1978
BpuEI CTTGAG 2 cut(s) 468, 605
BpuMI CCSGG 2 cut(s) 3114, 3115
BsaAI YACGTR 4 cut(s) 250, 1117, 1625, 3696
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 2 cut(s) 1157, 2228
BsaJI CCNNGG 8 cut(s) 628, 763, 1971, 2159, 2218, 3113, 3114, 3394
BsaWI WCCGGW 2 cut(s) 1159, 3170
BsaXI ACNNNNNCTCC 2 cut(s) 2658, 2688
Bsc4I CCNNNNNNNGG 7 cut(s) 373, 569, 1277, 1300, 2897, 3281, 3323
Bse118I RCCGGY 1 cut(s) 3170
Bse1I ACTGG 5 cut(s) 1337, 2458, 2551, 3377, 3929
Bse3DI GCAATG 4 cut(s) 966, 1711, 1829, 3583
BseBI CCWGG 6 cut(s) 564, 764, 2469, 3395, 3888, 3943
BseDI CCNNGG 8 cut(s) 628, 763, 1971, 2159, 2218, 3113, 3114, 3394
BseLI CCNNNNNNNGG 7 cut(s) 373, 569, 1277, 1300, 2897, 3281, 3323
BseMI GCAATG 4 cut(s) 966, 1711, 1829, 3583
BseMII CTCAG 9 cut(s) 108, 689, 711, 765, 1443, 1878, 2326, 3280, 3561
BseNI ACTGG 5 cut(s) 1337, 2458, 2551, 3377, 3929
BseRI GAGGAG 3 cut(s) 204, 645, 3054
BseSI GKGCMC 1 cut(s) 2311
BseXI GCAGC 9 cut(s) 23, 118, 1114, 1275, 2006, 2905, 2927, 3403, 3686
BseYI CCCAGC 2 cut(s) 599, 3145
BshFI GGCC 5 cut(s) 558, 863, 1219, 2199, 3072
BshNI GGYRCC 2 cut(s) 1335, 2583
BshTI ACCGGT 1 cut(s) 3170
BsiHKAI GWGCWC 5 cut(s) 74, 238, 2311, 3442, 3961
BsiHKCI CYCGRG 2 cut(s) 3113, 3871
BsiSI CCGG 3 cut(s) 1160, 3114, 3171
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 7 cut(s) 373, 569, 1277, 1300, 2897, 3281, 3323
BsmAI GTCTC 4 cut(s) 1157, 1738, 2228, 2559
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 2 cut(s) 395, 3011
BsnI GGCC 5 cut(s) 558, 863, 1219, 2199, 3072
Bso31I GGTCTC 2 cut(s) 1157, 2228
BsoBI CYCGRG 2 cut(s) 3113, 3871
Bsp119I TTCGAA 1 cut(s) 1978
Bsp1286I GDGCHC 7 cut(s) 74, 238, 1893, 2311, 2349, 3442, 3961
Bsp1407I TGTACA 1 cut(s) 2674
Bsp143I GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
BspACI CCGC 3 cut(s) 292, 432, 3358
BspANI GGCC 5 cut(s) 558, 863, 1219, 2199, 3072
BspCNI CTCAG 9 cut(s) 109, 688, 712, 764, 1444, 1879, 2325, 3279, 3562
BspLI GGNNCC 3 cut(s) 1337, 2585, 3120
BspMAI CTGCAG 2 cut(s) 2821, 3184
BspPI GGATC 4 cut(s) 81, 1326, 3232, 3508
BspT104I TTCGAA 1 cut(s) 1978
BspT107I GGYRCC 2 cut(s) 1335, 2583
BspTNI GGTCTC 2 cut(s) 1157, 2228
BsrDI GCAATG 4 cut(s) 966, 1711, 1829, 3583
BsrFI RCCGGY 1 cut(s) 3170
BsrGI TGTACA 1 cut(s) 2674
BsrI ACTGG 5 cut(s) 1337, 2458, 2551, 3377, 3929
BssAI RCCGGY 1 cut(s) 3170
BssECI CCNNGG 8 cut(s) 628, 763, 1971, 2159, 2218, 3113, 3114, 3394
BssMI GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
BssNAI GTATAC 1 cut(s) 3586
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 1971, 2159
Bst1107I GTATAC 1 cut(s) 3586
Bst2UI CCWGG 6 cut(s) 564, 764, 2469, 3395, 3888, 3943
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 1523
BstAUI TGTACA 1 cut(s) 2674
BstBAI YACGTR 4 cut(s) 250, 1117, 1625, 3696
BstBI TTCGAA 1 cut(s) 1978
BstC8I GCNNGC 6 cut(s) 479, 1436, 2201, 2699, 2703, 3346
BstDSI CCRYGG 1 cut(s) 2218
BstEII GGTNACC 1 cut(s) 3166
BstENI CCTNNNNNAGG 1 cut(s) 1298
BstHHI GCGC 4 cut(s) 1551, 1600, 2707, 3576
BstKTI GATC 8 cut(s) 89, 1321, 1965, 2729, 3227, 3503, 3645, 4066
BstMAI GTCTC 4 cut(s) 1157, 1738, 2228, 2559
BstMBI GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
BstMWI GCNNNNNNNGC 5 cut(s) 564, 1523, 2915, 3194, 4009
BstNI CCWGG 6 cut(s) 564, 764, 2469, 3395, 3888, 3943
BstNSI RCATGY 5 cut(s) 56, 1521, 3348, 3423, 4128
BstPI GGTNACC 1 cut(s) 3166
BstSCI CCNGG 8 cut(s) 562, 762, 2467, 3112, 3113, 3393, 3886, 3941
BstSFI CTRYAG 9 cut(s) 1354, 1989, 2193, 2432, 2817, 2922, 3180, 3217, 4131
BstSLI GKGCMC 1 cut(s) 2311
BstSNI TACGTA 1 cut(s) 3696
BstV1I GCAGC 9 cut(s) 23, 118, 1114, 1275, 2006, 2905, 2927, 3403, 3686
BstV2I GAAGAC 4 cut(s) 581, 686, 1350, 1741
BstX2I RGATCY 2 cut(s) 86, 2726
BstXI CCANNNNNNTGG 4 cut(s) 426, 770, 1135, 3153
BstYI RGATCY 2 cut(s) 86, 2726
BstZ17I GTATAC 1 cut(s) 3586
BsuI GTATCC 3 cut(s) 356, 3708, 3914
BsuRI GGCC 5 cut(s) 558, 863, 1219, 2199, 3072
BtgI CCRYGG 1 cut(s) 2218
BtsI GCAGTG 2 cut(s) 131, 1256
BtsIMutI CAGTG 6 cut(s) 131, 523, 1256, 2239, 2516, 4030
Cac8I GCNNGC 6 cut(s) 479, 1436, 2201, 2699, 2703, 3346
CaiI CAGNNNCTG 1 cut(s) 1108
CfoI GCGC 4 cut(s) 1551, 1600, 2707, 3576
Cfr10I RCCGGY 1 cut(s) 3170
Cfr13I GGNCC 8 cut(s) 36, 429, 557, 625, 1022, 1217, 3890, 3945
Cfr9I CCCGGG 1 cut(s) 3113
CseI GACGC 1 cut(s) 965
CspAI ACCGGT 1 cut(s) 3170
DpnI GATC 8 cut(s) 88, 1320, 1964, 2728, 3226, 3502, 3644, 4065
DpnII GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
DraI TTTAAA 1 cut(s) 2322
DriI GACNNNNNGTC 1 cut(s) 1745
Eam1105I GACNNNNNGTC 1 cut(s) 1745
Ecl136II GAGCTC 1 cut(s) 236
Eco105I TACGTA 1 cut(s) 3696
Eco130I CCWWGG 2 cut(s) 1971, 2159
Eco24I GRGCYC 3 cut(s) 238, 1893, 2349
Eco31I GGTCTC 2 cut(s) 1157, 2228
Eco32I GATATC 2 cut(s) 1053, 2253
Eco47I GGWCC 6 cut(s) 36, 429, 625, 1022, 3890, 3945
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 5 cut(s) 60, 1067, 1133, 2121, 3813
Eco72I CACGTG 1 cut(s) 250
Eco88I CYCGRG 2 cut(s) 3113, 3871
Eco91I GGTNACC 1 cut(s) 3166
EcoICRI GAGCTC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 1298
EcoO109I RGGNCCY 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 3166
EcoRI GAATTC 1 cut(s) 2472
EcoRII CCWGG 6 cut(s) 562, 762, 2467, 3393, 3886, 3941
EcoRV GATATC 2 cut(s) 1053, 2253
EcoT14I CCWWGG 2 cut(s) 1971, 2159
EcoT22I ATGCAT 3 cut(s) 58, 2330, 3527
EcoT38I GRGCYC 3 cut(s) 238, 1893, 2349
ErhI CCWWGG 2 cut(s) 1971, 2159
FalI AAGNNNNNCTT 2 cut(s) 2733, 2765
FaqI GGGAC 1 cut(s) 815
FauNDI CATATG 2 cut(s) 2119, 2605
FbaI TGATCA 1 cut(s) 3642
FblI GTMKAC 1 cut(s) 3585
FriOI GRGCYC 3 cut(s) 238, 1893, 2349
GlaI GCGC 4 cut(s) 1550, 1599, 2706, 3575
GsaI CCCAGC 2 cut(s) 603, 3149
GsuI CTGGAG 4 cut(s) 546, 878, 1720, 3394
HaeIII GGCC 5 cut(s) 558, 863, 1219, 2199, 3072
HapII CCGG 3 cut(s) 1160, 3114, 3171
HgaI GACGC 1 cut(s) 965
HhaI GCGC 4 cut(s) 1551, 1600, 2707, 3576
Hin1I GRCGYC 1 cut(s) 81
Hin6I GCGC 4 cut(s) 1549, 1598, 2705, 3574
HinP1I GCGC 4 cut(s) 1549, 1598, 2705, 3574
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HindIII AAGCTT 1 cut(s) 3086
HinfI GANTC 7 cut(s) 502, 544, 916, 1124, 1819, 2066, 2669
HpaII CCGG 3 cut(s) 1160, 3114, 3171
HphI GGTGA 4 cut(s) 2293, 2975, 3160, 3652
Hpy166II GTNNAC 5 cut(s) 1372, 2301, 2309, 2630, 3586
Hpy8I GTNNAC 5 cut(s) 1372, 2301, 2309, 2630, 3586
Hpy99I CGWCG 5 cut(s) 110, 113, 959, 1595, 3619
HpyAV CCTTC 8 cut(s) 801, 853, 869, 1091, 1177, 2555, 3982, 4039
HpyCH4IV ACGT 6 cut(s) 81, 249, 757, 1116, 1624, 3695
HpyF10VI GCNNNNNNNGC 5 cut(s) 564, 1523, 2915, 3194, 4009
HpySE526I ACGT 6 cut(s) 81, 249, 757, 1116, 1624, 3695
Hsp92I GRCGYC 1 cut(s) 81
HspAI GCGC 4 cut(s) 1549, 1598, 2705, 3574
KpnI GGTACC 2 cut(s) 1339, 2587
Ksp22I TGATCA 1 cut(s) 3642
Kzo9I GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
LmnI GCTCC 7 cut(s) 69, 233, 2161, 2261, 2501, 3331, 3437
Lsp1109I GCAGC 9 cut(s) 23, 118, 1114, 1275, 2006, 2905, 2927, 3403, 3686
LweI GCATC 8 cut(s) 65, 531, 1456, 1828, 1942, 1976, 2896, 3370
MaeII ACGT 6 cut(s) 81, 249, 757, 1116, 1624, 3695
MalI GATC 8 cut(s) 88, 1320, 1964, 2728, 3226, 3502, 3644, 4065
MboI GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
MfeI CAATTG 3 cut(s) 870, 3538, 4080
MflI RGATCY 2 cut(s) 86, 2726
MhlI GDGCHC 7 cut(s) 74, 238, 1893, 2311, 2349, 3442, 3961
MlyI GAGTC 2 cut(s) 538, 1118
MmeI TCCRAC 4 cut(s) 163, 340, 1387, 2067
Mph1103I ATGCAT 3 cut(s) 58, 2330, 3527
MroXI GAANNNNTTC 3 cut(s) 399, 1536, 2748
MseI TTAA 8 cut(s) 609, 1493, 1511, 1776, 2018, 2321, 3129, 3950
MslI CAYNNNNRTG 6 cut(s) 51, 854, 1464, 1627, 3232, 3349
MspA1I CMGCKG 1 cut(s) 2918
MspI CCGG 3 cut(s) 1160, 3114, 3171
MspR9I CCNGG 8 cut(s) 564, 764, 2469, 3114, 3115, 3395, 3888, 3943
MunI CAATTG 3 cut(s) 870, 3538, 4080
Mva1269I GAATGC 2 cut(s) 395, 3011
MvaI CCWGG 6 cut(s) 564, 764, 2469, 3395, 3888, 3943
MwoI GCNNNNNNNGC 5 cut(s) 564, 1523, 2915, 3194, 4009
NciI CCSGG 2 cut(s) 3114, 3115
NdeI CATATG 2 cut(s) 2119, 2605
NdeII GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
NlaIV GGNNCC 3 cut(s) 1337, 2585, 3120
NmeAIII GCCGAG 1 cut(s) 2663
NmuCI GTSAC 6 cut(s) 220, 2188, 2234, 2636, 3166, 3720
NsiI ATGCAT 3 cut(s) 58, 2330, 3527
NspI RCATGY 5 cut(s) 56, 1521, 3348, 3423, 4128
NspV TTCGAA 1 cut(s) 1978
PaeI GCATGC 1 cut(s) 3348
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 246, 3692
PctI GAATGC 2 cut(s) 395, 3011
PdmI GAANNNNTTC 3 cut(s) 399, 1536, 2748
PfeI GAWTC 5 cut(s) 502, 916, 1819, 2066, 2669
PflFI GACNNNGTC 1 cut(s) 1646
PflMI CCANNNNNTGG 3 cut(s) 373, 569, 3323
PinAI ACCGGT 1 cut(s) 3170
PleI GAGTC 2 cut(s) 538, 1118
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
PpsI GAGTC 2 cut(s) 538, 1118
Ppu21I YACGTR 4 cut(s) 250, 1117, 1625, 3696
PpuMI RGGWCCY 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 6 cut(s) 562, 762, 2467, 3393, 3886, 3941
PspCI CACGTG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 3166
PspFI CCCAGC 2 cut(s) 599, 3145
PspGI CCWGG 6 cut(s) 562, 762, 2467, 3393, 3886, 3941
PspN4I GGNNCC 3 cut(s) 1337, 2585, 3120
PspPI GGNCC 8 cut(s) 36, 429, 557, 625, 1022, 1217, 3890, 3945
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 4068, 4100
PstI CTGCAG 2 cut(s) 2821, 3184
PstNI CAGNNNCTG 1 cut(s) 1108
PsuI RGATCY 2 cut(s) 86, 2726
PsyI GACNNNGTC 1 cut(s) 1646
PvuII CAGCTG 1 cut(s) 2918
RseI CAYNNNNRTG 6 cut(s) 51, 854, 1464, 1627, 3232, 3349
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 8 cut(s) 609, 1493, 1511, 1776, 2018, 2321, 3129, 3950
Sau3AI GATC 8 cut(s) 86, 1318, 1962, 2726, 3224, 3500, 3642, 4063
Sau96I GGNCC 8 cut(s) 36, 429, 557, 625, 1022, 1217, 3890, 3945
ScaI AGTACT 2 cut(s) 1331, 1661
SchI GAGTC 2 cut(s) 538, 1118
ScrFI CCNGG 8 cut(s) 564, 764, 2469, 3114, 3115, 3395, 3888, 3943
SduI GDGCHC 7 cut(s) 74, 238, 1893, 2311, 2349, 3442, 3961
SfaNI GCATC 8 cut(s) 65, 531, 1456, 1828, 1942, 1976, 2896, 3370
SfcI CTRYAG 9 cut(s) 1354, 1989, 2193, 2432, 2817, 2922, 3180, 3217, 4131
SfuI TTCGAA 1 cut(s) 1978
SinI GGWCC 6 cut(s) 36, 429, 625, 1022, 3890, 3945
SmaI CCCGGG 1 cut(s) 3115
SmiMI CAYNNNNRTG 6 cut(s) 51, 854, 1464, 1627, 3232, 3349
SmlI CTYRAG 2 cut(s) 483, 620
SmoI CTYRAG 2 cut(s) 483, 620
SnaBI TACGTA 1 cut(s) 3696
SpeI ACTAGT 2 cut(s) 3253, 4102
SphI GCATGC 1 cut(s) 3348
SsiI CCGC 3 cut(s) 292, 432, 3358
SspI AATATT 3 cut(s) 1639, 2877, 2947
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 8 cut(s) 562, 762, 2467, 3112, 3113, 3393, 3886, 3941
StyI CCWWGG 2 cut(s) 1971, 2159
TaiI ACGT 6 cut(s) 84, 252, 760, 1119, 1627, 3698
TaqI TCGA 7 cut(s) 59, 240, 744, 1312, 1978, 3015, 3686
TatI WGTACW 7 cut(s) 1329, 1520, 1659, 2593, 2674, 2954, 3609
TauI GCSGC 1 cut(s) 3361
TfiI GAWTC 5 cut(s) 502, 916, 1819, 2066, 2669
Tru1I TTAA 8 cut(s) 609, 1493, 1511, 1776, 2018, 2321, 3129, 3950
Tru9I TTAA 8 cut(s) 609, 1493, 1511, 1776, 2018, 2321, 3129, 3950
TscAI CASTG 6 cut(s) 131, 523, 1256, 2239, 2523, 4030
TseFI GTSAC 6 cut(s) 220, 2188, 2234, 2636, 3166, 3720
TseI GCWGC 9 cut(s) 11, 131, 1102, 1263, 1994, 2915, 2918, 3416, 3674
Tsp45I GTSAC 6 cut(s) 220, 2188, 2234, 2636, 3166, 3720
TspGWI ACGGA 1 cut(s) 3075
TspMI CCCGGG 1 cut(s) 3113
TspRI CASTG 6 cut(s) 131, 523, 1256, 2239, 2523, 4030
Tth111I GACNNNGTC 1 cut(s) 1646
Van91I CCANNNNNTGG 3 cut(s) 373, 569, 3323
VneI GTGCAC 1 cut(s) 2307
VpaK11BI GGWCC 6 cut(s) 36, 429, 625, 1022, 3890, 3945
XagI CCTNNNNNAGG 1 cut(s) 1298
XapI RAATTY 8 cut(s) 370, 972, 2147, 2472, 3076, 3482, 3651, 3897
XceI RCATGY 5 cut(s) 56, 1521, 3348, 3423, 4128
XcmI CCANNNNNNNNNTGG 2 cut(s) 2878, 3324
XmaI CCCGGG 1 cut(s) 3113
XmiI GTMKAC 1 cut(s) 3585
XmnI GAANNNNTTC 3 cut(s) 399, 1536, 2748
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 2 cut(s) 1331, 1661
Zsp2I ATGCAT 3 cut(s) 58, 2330, 3527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.