Rorug04G0216400
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
37436947 .. 37438054
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0216400.1

Sequence Viewer

Length: 393 bp
ATGCTATCAGCCCTGAGATCATCGAGTCTGTCAAATAGCTGTTGGAAGAGTAATTGGTTCACACAAGAGATGAGCTATATGATACTTGCTTTAATAGTGAGTACCAGGCCAAAACTCGAAGGAACTGTTGCAGATGGAGAAGCCTCAAATTCAGAGAGTAGACTGATTTGGTGGTTTCGTGATAGATTGAAGAAGGCCTCGGGAGTTTTCTGGGAAAGAAAGAGGAAGGGTGATCTCTTCATTGTGAGAGTTGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGATTATTCTGAGTATTGTGTTGTAGCTCTAGACATTGAAATATTTCCAATAGGGTTTACTAAAGTGGCTACAGATAAGAATTCTAAAGCTGGATCAAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

130

Amino Acids

14.81

Weight (kDa)

9.2

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 2 cut(s) 148, 367
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 3 cut(s) 190, 274, 326
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 4 cut(s) 39, 75, 314, 377
AluI AGCT 4 cut(s) 39, 75, 314, 377
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 388
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 2 cut(s) 107, 195
ApoI RAATTY 2 cut(s) 148, 367
Asp700I GAANNNNTTC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 199
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 2 cut(s) 317, 391
BfmI CTRYAG 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 5, 288
BseRI GAGGAG 1 cut(s) 274
BshFI GGCC 2 cut(s) 109, 197
BsiHKCI CYCGRG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 2 cut(s) 109, 197
BsoBI CYCGRG 1 cut(s) 199
Bsp143I GATC 3 cut(s) 17, 232, 380
BspANI GGCC 2 cut(s) 109, 197
BspCNI CTCAG 2 cut(s) 6, 289
BspPI GGATC 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 17, 232, 380
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 2 cut(s) 41, 242
BstDEI CTNAG 2 cut(s) 14, 297
BstKTI GATC 3 cut(s) 20, 235, 383
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 3 cut(s) 17, 232, 380
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 357
BsuRI GGCC 2 cut(s) 109, 197
Csp6I GTAC 1 cut(s) 102
CviJI RGCY 9 cut(s) 11, 39, 75, 109, 143, 197, 314, 356, 377
CviKI_1 RGCY 9 cut(s) 11, 39, 75, 109, 143, 197, 314, 356, 377
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 14, 297
DpnI GATC 3 cut(s) 19, 234, 382
DpnII GATC 3 cut(s) 17, 232, 380
Eam1104I CTCTTC 2 cut(s) 41, 242
EarI CTCTTC 2 cut(s) 41, 242
Eco147I AGGCCT 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 104
FaiI YATR 2 cut(s) 78, 80
FblI GTMKAC 1 cut(s) 160
FspBI CTAG 2 cut(s) 317, 391
HaeIII GGCC 2 cut(s) 109, 197
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 60, 161, 345
Hpy188I TCNGA 2 cut(s) 154, 298
Hpy188III TCNNGA 3 cut(s) 179, 201, 317
Hpy8I GTNNAC 3 cut(s) 60, 161, 345
HpyAV CCTTC 3 cut(s) 113, 187, 220
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 14, 297
Kzo9I GATC 3 cut(s) 17, 232, 380
LpnPI CCDG 5 cut(s) 26, 91, 118, 196, 363
MaeI CTAG 2 cut(s) 317, 391
MalI GATC 3 cut(s) 19, 234, 382
MboI GATC 3 cut(s) 17, 232, 380
MboII GAAGA 3 cut(s) 58, 202, 229
MluCI AATT 3 cut(s) 52, 148, 367
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 23, 232
MnlI CCTC 4 cut(s) 154, 208, 216, 252
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
NdeII GATC 3 cut(s) 17, 232, 380
PceI AGGCCT 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 330
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 3 cut(s) 17, 232, 380
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 106
SetI ASST 5 cut(s) 41, 77, 279, 316, 379
SfcI CTRYAG 1 cut(s) 357
Sse9I AATT 3 cut(s) 52, 148, 367
SseBI AGGCCT 1 cut(s) 197
SspI AATATT 1 cut(s) 330
SspMI CTAG 2 cut(s) 317, 391
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 3 cut(s) 23, 117, 267
TasI AATT 3 cut(s) 52, 148, 367
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 229
XapI RAATTY 2 cut(s) 148, 367
XbaI TCTAGA 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 317, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.