Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Reverse (-)

24410157 .. 24413771

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGGCTGATCAGAAAGATCAGTCAGATGGAGATGTATTAAAAGAGCAAGCCATGGCATCAACAAAGGCAGCAGATTCCGCAAATAACAAGCACGGCGGCACAGACAAGAGCAAGGAGGATGCAACCAATAACAGTATACCATATTACAAGCTTTTCTCGTTTGCTGATACCATGGATTACCTGTATATGTCTGTTGGTACCATCAGCGCCATTGGAAATGGGCTATGCATGCCTCTAATGACGGTGATCATGGGCGAGGTGATCAATTCTTTGGGAGAAACTACGAGTATCGATAAAGTGGTCGGTATAGTTTCTAAGGTGTCTCTCAAGTTCGTTTTCTTGGCTTTGGGGGCTTCTGCTGCTGCATTTTTACGTGTACTATGTACATTAGAAATGTCATGCTGGATGATCGCTGGAGAGAGACAGGCAGCAAGAATAAGAAGTATATACTTGAAAACAATACTAAGGCAGGACGTTGGCTTTTTTGATACAGAGGTCAACACTGGGGAAATTGTTGGCAGGATGTCGGGCGACACTGCGCTCATTCAGGAAGCGATGGGCGAGAAAGTAGGAAGTTTTATCCAGTTAGTTGCTACATTCATAGCAGGCTTTGTTATAGCATTTGCCACGGGATGGAGTCTCACTCTTGTCATGCTAACCTCTATTCCCCCTCTTATCATCTCTGGTGCTGCCTTGAGCTTCACTATAAGGAAATTATCATCCCGTGGACAAGAGGCTTATTCAATGGGAGCAACAGTTGTTGAGCAAACAATTGATTCTATCAAAACTGTTGCATCATTTACGGGGGAGAAGCAAGCTATAACCAAGTACAACAACTCCTTAAGTAAAGCTTATAAGTCTGGTGTGCACGAGGGTTTGGCATCAGGGTCGGGTATGGGTACGGCTGTGTTTATTTTTTTCAGCAGTTATGCTCTGGCTGTATGGTATGGTGGAAAAATGATACTTGAACAAATATATAAAGCAGGAGATGTAATGAATGTGATTTTCGCTGTATTGACTGGCGCTTTCTCTCTCGGGCAAGCCTCTCCATGCATAAGTGCATTTTCTGCTGGACAAGCTGCAGCTTATAAGATGTTTGAGACAATTAACAGAAAGCCGGAGATAGATGTTTCTGATACTAATGGGAAACAACTAGAAGACATCCGAGGAGACATAGAATTTAAGGATGTTTGTTTTAGTTATCCTGCAAGACCAGATGAACAAATATTCCAACGATTCTCACTCTCAATATCTAGTGGTGCAACTGTTGCTTTGGTAGGACAGAGCGGAAGTGGTAAATCGACTATAATCAGTTTAATTGAGAGATTTTATGACCCACAAGCTGGTGAAGTTCTTATTGATGGCATTAATCGCAAAGAGTTTCAGCTGAAATGGATCAGAGAGAAAATAGGACTTGTCAGCCAAGAACCTGTTTTGTTTACTTGCAGCATTATAGATAATATTACCTATGGGAAGGACGGAGCATCTTTTGAAGAAATAAAGGCTGCTGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAATTACCACAGGGACTAGATACAATGGTTGGTGAGCATGGTACTCAGCTATCTGGGGGACAAAAGCAGAGAGTTGCCATAGCTAGAGCAATTCTTAAGAACCCAAGAATTCTGCTTTTAGATGAAGCCACAAGTGCTCTTGCTGCAGAATCTGAGATGGTTGTGCAAGAGGCATTGGACAGAATTAGGAATGCTGTCATTGTAGCCCACCGCTCGAGTACAATTAGGAATGCTGATACGATTGCAGTGTTAAGTCGCGGGAAGGTTGTTGAACAAGGAACACATTCTGAACTAGTTAAGGTTTCCGATGGAGCATATAGCCAGCTTATAGGGTTGCAACAAATTAGTAGTGTGTCAGAACAAAATTCTCAATACGTTCCGGAAATTAGGCCAGTATCAGACTTTCGAAGAGACACAATAAGTCCAAGACTTTCTCCATTACAATCCATAACTCGGGGACAATCCGGAAATAATAGTCCCCTCTCACCAGGTGCGCCTAATTTATTTGGTGTTCTTGAAATAGAACCAACTGAACCCCACATTCCAGCTGCATCATCAGAAATGCATCCAGAAGTCTCACTTAGCCGCCTGGCTTACCTAAACAAGACAGAAATTCCAGTGCTACTACTAGGTACTATAGCTGTAGCAGGGGTCCTAATATCCAGCGTGATCAAGACCTTCTTTGATCCACCTCATCAGTTGCGGAAGGACTCAAAGTTTTGGGCATTAATCTTTGTTGTGGATAATCGTTCCTTATATACAGTTCCTATCCAAGTTTCATTGAATTTGATGATCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

781

Amino Acids

84.22

Weight (kDa)

5.73

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	65 - 343	4.1e-55	ABC transporter transmembrane region
ABC_tran	PF00005	411 - 559	5.4e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	855, 1089
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	2 cut(s)	633, 1343
AccBSI	CCGCTC	2 cut(s)	1287, 1755
AccI	GTMKAC	1 cut(s)	136
AccII	CGCG	1 cut(s)	1800
AccIII	TCCGGA	2 cut(s)	1921, 2006
AciI	CCGC	7 cut(s)	78, 96, 1287, 1753, 1800, 2128, 2245
AclWI	GGATC	2 cut(s)	1403, 2222
AcsI	RAATTY	6 cut(s)	1178, 1532, 1650, 1906, 2154, 2326
AdeI	CACNNNGTG	1 cut(s)	2033
AfaI	GTAC	8 cut(s)	199, 378, 385, 830, 901, 1585, 1762, 2176
AfiI	CCNNNNNNNGG	3 cut(s)	633, 1343, 1995
AflII	CTTAAG	2 cut(s)	841, 1637
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	7 cut(s)	454, 744, 968, 1493, 1814, 2060, 2326
AhlI	ACTAGT	1 cut(s)	1834
AjnI	CCWGG	2 cut(s)	2029, 2130
AloI	GAACNNNNNNTCC	2 cut(s)	1212, 1244
Alw21I	GWGCWC	2 cut(s)	870, 1681
Alw26I	GTCTC	7 cut(s)	327, 415, 644, 1094, 1164, 1947, 2122
Alw44I	GTGCAC	1 cut(s)	866
AlwI	GGATC	2 cut(s)	1403, 2222
AlwNI	CAGNNNCTG	1 cut(s)	1694
Ama87I	CYCGRG	3 cut(s)	1034, 1756, 1995
Aor13HI	TCCGGA	2 cut(s)	1921, 2006
AoxI	GGCC	1 cut(s)	1931
ApaLI	GTGCAC	1 cut(s)	866
ApoI	RAATTY	6 cut(s)	1178, 1532, 1650, 1906, 2154, 2326
AseI	ATTAAT	2 cut(s)	1368, 2270
Asp700I	GAANNNNTTC	1 cut(s)	1825
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	4 cut(s)	209, 541, 1025, 2038
AspS9I	GGNCC	1 cut(s)	2194
AsuHPI	GGTGA	5 cut(s)	256, 271, 1358, 1586, 2019
AsuII	TTCGAA	1 cut(s)	1948
AvaI	CYCGRG	3 cut(s)	1034, 1756, 1995
AvaII	GGWCC	1 cut(s)	2194
BaeGI	GKGCMC	1 cut(s)	870
BaeI	ACNNNNGTAYC	6 cut(s)	480, 513, 891, 924, 1554, 1587
BanI	GGYRCC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	1164
Bbv12I	GWGCWC	2 cut(s)	870, 1681
BccI	CCATC	7 cut(s)	20, 209, 550, 627, 1355, 1693, 1844
BceAI	ACGGC	2 cut(s)	109, 918
BcgI	CGANNNNNNTGC	2 cut(s)	870, 904
BciT130I	CCWGG	2 cut(s)	2031, 2132
BclI	TGATCA	4 cut(s)	7, 246, 261, 2211
BcoDI	GTCTC	7 cut(s)	327, 415, 644, 1094, 1164, 1947, 2122
BcuI	ACTAGT	1 cut(s)	1834
BfaI	CTAG	6 cut(s)	1154, 1254, 1559, 1626, 1835, 2171
BfmI	CTRYAG	4 cut(s)	1080, 1686, 2178, 2184
BfoI	RGCGCY	2 cut(s)	210, 1026
BfrI	CTTAAG	2 cut(s)	841, 1637
BlpI	GCTNAGC	1 cut(s)	1512
Bme1390I	CCNGG	2 cut(s)	2031, 2132
Bme18I	GGWCC	1 cut(s)	2194
BmeT110I	CYCGRG	3 cut(s)	1034, 1756, 1995
BmgT120I	GGNCC	1 cut(s)	2194
BmiI	GGNNCC	2 cut(s)	199, 2195
BmrFI	CCNGG	2 cut(s)	2031, 2132
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	7 cut(s)	65, 109, 803, 890, 1493, 2102, 2116
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	1164
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpmI	CTGGAG	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	1512
Bpu14I	TTCGAA	1 cut(s)	1948
BpuEI	CTTGAG	2 cut(s)	311, 715
Bsa29I	ATCGAT	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	5 cut(s)	51, 171, 627, 724, 1165
BsaWI	WCCGGW	2 cut(s)	1921, 2006
BsaXI	ACNNNNNCTCC	4 cut(s)	741, 771, 821, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	633, 1343, 1995
Bse1I	ACTGG	5 cut(s)	508, 583, 1024, 1934, 2159
BseAI	TCCGGA	2 cut(s)	1921, 2006
BseBI	CCWGG	2 cut(s)	2031, 2132
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	5 cut(s)	51, 171, 627, 724, 1165
BseGI	GGATG	8 cut(s)	124, 411, 528, 638, 719, 1161, 1192, 2107
BseLI	CCNNNNNNNGG	3 cut(s)	633, 1343, 1995
BseMII	CTCAG	3 cut(s)	1503, 1601, 1686
BseNI	ACTGG	5 cut(s)	508, 583, 1024, 1934, 2159
BseRI	GAGGAG	1 cut(s)	1182
BseSI	GKGCMC	1 cut(s)	870
Bsh1236I	CGCG	1 cut(s)	1800
BshFI	GGCC	1 cut(s)	1933
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	870, 1681
BsiHKCI	CYCGRG	3 cut(s)	1034, 1756, 1995
BsiSI	CCGG	3 cut(s)	1118, 1922, 2007
BslFI	GGGAC	4 cut(s)	1569, 1614, 2004, 2013
BslI	CCNNNNNNNGG	3 cut(s)	633, 1343, 1995
BsmAI	GTCTC	7 cut(s)	327, 415, 644, 1094, 1164, 1947, 2122
BsmFI	GGGAC	4 cut(s)	1569, 1614, 2004, 2013
BsmI	GAATGC	2 cut(s)	1738, 1777
BsnI	GGCC	1 cut(s)	1933
BsoBI	CYCGRG	3 cut(s)	1034, 1756, 1995
Bsp119I	TTCGAA	1 cut(s)	1948
Bsp1286I	GDGCHC	2 cut(s)	870, 1681
Bsp13I	TCCGGA	2 cut(s)	1921, 2006
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
Bsp1720I	GCTNAGC	1 cut(s)	1512
Bsp19I	CCATGG	2 cut(s)	51, 171
BspACI	CCGC	7 cut(s)	78, 96, 1287, 1753, 1800, 2128, 2245
BspANI	GGCC	1 cut(s)	1933
BspCNI	CTCAG	3 cut(s)	1504, 1600, 1687
BspDI	ATCGAT	1 cut(s)	291
BspEI	TCCGGA	2 cut(s)	1921, 2006
BspFNI	CGCG	1 cut(s)	1800
BspLI	GGNNCC	2 cut(s)	199, 2195
BspMAI	CTGCAG	2 cut(s)	1084, 1690
BspPI	GGATC	2 cut(s)	1403, 2222
BspT104I	TTCGAA	1 cut(s)	1948
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	2 cut(s)	841, 1637
BsrBI	CCGCTC	2 cut(s)	1287, 1755
BsrGI	TGTACA	1 cut(s)	383
BsrI	ACTGG	5 cut(s)	508, 583, 1024, 1934, 2159
BssECI	CCNNGG	5 cut(s)	51, 171, 627, 724, 1165
BssMI	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
BssNAI	GTATAC	1 cut(s)	137
BssSI	CACGAG	1 cut(s)	869
BssT1I	CCWWGG	2 cut(s)	51, 171
Bst1107I	GTATAC	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	2 cut(s)	2031, 2132
Bst4CI	ACNGT	6 cut(s)	134, 244, 757, 790, 1267, 2305
Bst6I	CTCTTC	1 cut(s)	1945
BstAFI	CTTAAG	2 cut(s)	841, 1637
BstAPI	GCANNNNNTGC	2 cut(s)	1067, 1268
BstAUI	TGTACA	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	1948
BstC8I	GCNNGC	7 cut(s)	48, 230, 607, 816, 1041, 1518, 1865
BstDEI	CTNAG	6 cut(s)	315, 464, 1512, 1587, 1695, 2123
BstDSI	CCRYGG	4 cut(s)	51, 171, 627, 724
BstF5I	GGATG	8 cut(s)	124, 411, 528, 638, 719, 1161, 1192, 2107
BstFNI	CGCG	1 cut(s)	1800
BstH2I	RGCGCY	2 cut(s)	210, 1026
BstHHI	GCGC	4 cut(s)	209, 541, 1025, 2038
BstKTI	GATC	9 cut(s)	10, 19, 249, 264, 411, 1398, 2214, 2230, 2337
BstMAI	GTCTC	7 cut(s)	327, 415, 644, 1094, 1164, 1947, 2122
BstMBI	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
BstNI	CCWGG	2 cut(s)	2031, 2132
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	2029, 2130
BstSFI	CTRYAG	4 cut(s)	1080, 1686, 2178, 2184
BstSLI	GKGCMC	1 cut(s)	870
BstUI	CGCG	1 cut(s)	1800
BstV2I	GAAGAC	1 cut(s)	1164
BstZ17I	GTATAC	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	1933
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	4 cut(s)	51, 171, 627, 724
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	8 cut(s)	124, 411, 528, 638, 719, 1161, 1192, 2107
BtsI	GCAGTG	2 cut(s)	534, 1794
BtsIMutI	CAGTG	4 cut(s)	501, 534, 1794, 2166
Cac8I	GCNNGC	7 cut(s)	48, 230, 607, 816, 1041, 1518, 1865
CaiI	CAGNNNCTG	1 cut(s)	1694
CfoI	GCGC	4 cut(s)	209, 541, 1025, 2038
Cfr13I	GGNCC	1 cut(s)	2194
ClaI	ATCGAT	1 cut(s)	291
CsiI	ACCWGGT	1 cut(s)	2029
Csp6I	GTAC	8 cut(s)	198, 377, 384, 829, 900, 1584, 1761, 2175
CviAII	CATG	8 cut(s)	52, 172, 229, 250, 399, 652, 1050, 1580
CviQI	GTAC	8 cut(s)	198, 377, 384, 829, 900, 1584, 1761, 2175
DdeI	CTNAG	6 cut(s)	315, 464, 1512, 1587, 1695, 2123
DpnI	GATC	9 cut(s)	9, 18, 248, 263, 410, 1397, 2213, 2229, 2336
DpnII	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
DraIII	CACNNNGTG	1 cut(s)	2033
Eam1104I	CTCTTC	1 cut(s)	1945
EarI	CTCTTC	1 cut(s)	1945
Eco130I	CCWWGG	2 cut(s)	51, 171
Eco47I	GGWCC	1 cut(s)	2194
Eco88I	CYCGRG	3 cut(s)	1034, 1756, 1995
EcoO109I	RGGNCCY	1 cut(s)	2194
EcoRI	GAATTC	1 cut(s)	1650
EcoRII	CCWGG	2 cut(s)	2029, 2130
EcoT14I	CCWWGG	2 cut(s)	51, 171
EcoT22I	ATGCAT	3 cut(s)	230, 1055, 2109
ErhI	CCWWGG	2 cut(s)	51, 171
FaeI	CATG	8 cut(s)	55, 175, 232, 253, 402, 655, 1053, 1583
FalI	AAGNNNNNCTT	6 cut(s)	835, 867, 2106, 2138, 2207, 2239
FaqI	GGGAC	4 cut(s)	1569, 1614, 2004, 2013
FatI	CATG	8 cut(s)	51, 171, 228, 249, 398, 651, 1049, 1579
FauI	CCCGC	1 cut(s)	1793
FbaI	TGATCA	4 cut(s)	7, 246, 261, 2211
FblI	GTMKAC	1 cut(s)	136
FokI	GGATG	8 cut(s)	131, 418, 535, 645, 706, 1148, 1199, 2094
FspBI	CTAG	6 cut(s)	1154, 1254, 1559, 1626, 1835, 2171
GlaI	GCGC	4 cut(s)	208, 540, 1024, 2037
GsuI	CTGGAG	1 cut(s)	435
HaeII	RGCGCY	2 cut(s)	210, 1026
HaeIII	GGCC	1 cut(s)	1933
HapII	CCGG	3 cut(s)	1118, 1922, 2007
HhaI	GCGC	4 cut(s)	209, 541, 1025, 2038
Hin1II	CATG	8 cut(s)	55, 175, 232, 253, 402, 655, 1053, 1583
Hin6I	GCGC	4 cut(s)	207, 539, 1023, 2036
HinP1I	GCGC	4 cut(s)	207, 539, 1023, 2036
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	149, 849
HinfI	GANTC	6 cut(s)	74, 637, 776, 1236, 1691, 2252
HpaII	CCGG	3 cut(s)	1118, 1922, 2007
HphI	GGTGA	5 cut(s)	256, 271, 1358, 1586, 2019
Hpy166II	GTNNAC	6 cut(s)	137, 377, 499, 728, 868, 1440
Hpy188III	TCNNGA	6 cut(s)	548, 1922, 2007, 2057, 2111, 2215
Hpy8I	GTNNAC	6 cut(s)	137, 377, 499, 728, 868, 1440
HpyAV	CCTTC	4 cut(s)	1468, 1798, 2230, 2242
HpyCH4III	ACNGT	6 cut(s)	134, 244, 757, 790, 1267, 2305
HpyCH4IV	ACGT	3 cut(s)	373, 474, 1917
HpyF3I	CTNAG	6 cut(s)	315, 464, 1512, 1587, 1695, 2123
HpySE526I	ACGT	3 cut(s)	373, 474, 1917
Hsp92II	CATG	8 cut(s)	55, 175, 232, 253, 402, 655, 1053, 1583
HspAI	GCGC	4 cut(s)	207, 539, 1023, 2036
Kpn2I	TCCGGA	2 cut(s)	1921, 2006
KpnI	GGTACC	1 cut(s)	201
Ksp22I	TGATCA	4 cut(s)	7, 246, 261, 2211
Kzo9I	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
LmnI	GCTCC	3 cut(s)	749, 1481, 1853
LweI	GCATC	7 cut(s)	65, 109, 803, 890, 1493, 2102, 2116
MabI	ACCWGGT	1 cut(s)	2029
MaeI	CTAG	6 cut(s)	1154, 1254, 1559, 1626, 1835, 2171
MaeII	ACGT	3 cut(s)	373, 474, 1917
MalI	GATC	9 cut(s)	9, 18, 248, 263, 410, 1397, 2213, 2229, 2336
MbiI	CCGCTC	2 cut(s)	1287, 1755
MboI	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
MboII	GAAGA	3 cut(s)	1169, 1505, 1962
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	2 cut(s)	870, 1681
MlyI	GAGTC	2 cut(s)	646, 2246
MmeI	TCCRAC	1 cut(s)	1255
Mph1103I	ATGCAT	3 cut(s)	230, 1055, 2109
MroI	TCCGGA	2 cut(s)	1921, 2006
MroXI	GAANNNNTTC	1 cut(s)	1825
MspA1I	CMGCKG	2 cut(s)	1387, 2090
MspCI	CTTAAG	2 cut(s)	841, 1637
MspI	CCGG	3 cut(s)	1118, 1922, 2007
MspR9I	CCNGG	2 cut(s)	2031, 2132
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	1738, 1777
MvaI	CCWGG	2 cut(s)	2031, 2132
MvnI	CGCG	1 cut(s)	1800
NcoI	CCATGG	2 cut(s)	51, 171
NdeII	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
NlaIII	CATG	8 cut(s)	55, 175, 232, 253, 402, 655, 1053, 1583
NlaIV	GGNNCC	2 cut(s)	199, 2195
NsiI	ATGCAT	3 cut(s)	230, 1055, 2109
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	1948
PaeI	GCATGC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	1756
PctI	GAATGC	2 cut(s)	1738, 1777
PdmI	GAANNNNTTC	1 cut(s)	1825
PfeI	GAWTC	4 cut(s)	74, 776, 1236, 1691
PflMI	CCANNNNNTGG	2 cut(s)	633, 1343
PleI	GAGTC	2 cut(s)	645, 2246
PpsI	GAGTC	2 cut(s)	645, 2246
Ppu21I	YACGTR	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	2194
PshBI	ATTAAT	2 cut(s)	1368, 2270
PsiI	TTATAA	2 cut(s)	855, 1089
Psp5II	RGGWCCY	1 cut(s)	2194
Psp6I	CCWGG	2 cut(s)	2029, 2130
PspGI	CCWGG	2 cut(s)	2029, 2130
PspN4I	GGNNCC	2 cut(s)	199, 2195
PspPI	GGNCC	1 cut(s)	2194
PspPPI	RGGWCCY	1 cut(s)	2194
PspXI	VCTCGAGB	1 cut(s)	1756
PstI	CTGCAG	2 cut(s)	1084, 1690
PstNI	CAGNNNCTG	1 cut(s)	1694
PvuII	CAGCTG	2 cut(s)	1387, 2090
RsaI	GTAC	8 cut(s)	199, 378, 385, 830, 901, 1585, 1762, 2176
RsaNI	GTAC	8 cut(s)	198, 377, 384, 829, 900, 1584, 1761, 2175
Sau3AI	GATC	9 cut(s)	7, 16, 246, 261, 408, 1395, 2211, 2227, 2334
Sau96I	GGNCC	1 cut(s)	2194
SchI	GAGTC	2 cut(s)	646, 2246
ScrFI	CCNGG	2 cut(s)	2031, 2132
SduI	GDGCHC	2 cut(s)	870, 1681
SexAI	ACCWGGT	1 cut(s)	2029
SfaNI	GCATC	7 cut(s)	65, 109, 803, 890, 1493, 2102, 2116
SfcI	CTRYAG	4 cut(s)	1080, 1686, 2178, 2184
Sfr274I	CTCGAG	1 cut(s)	1756
SfuI	TTCGAA	1 cut(s)	1948
SinI	GGWCC	1 cut(s)	2194
SlaI	CTCGAG	1 cut(s)	1756
SmlI	CTYRAG	5 cut(s)	326, 694, 841, 1637, 1756
SmoI	CTYRAG	5 cut(s)	326, 694, 841, 1637, 1756
SpeI	ACTAGT	1 cut(s)	1834
SphI	GCATGC	1 cut(s)	232
SsiI	CCGC	7 cut(s)	78, 96, 1287, 1753, 1800, 2128, 2245
SspI	AATATT	2 cut(s)	1227, 1462
SspMI	CTAG	6 cut(s)	1154, 1254, 1559, 1626, 1835, 2171
StyD4I	CCNGG	2 cut(s)	2029, 2130
StyI	CCWWGG	2 cut(s)	51, 171
TaaI	ACNGT	6 cut(s)	134, 244, 757, 790, 1267, 2305
TaiI	ACGT	3 cut(s)	376, 477, 1920
TaqI	TCGA	4 cut(s)	291, 1301, 1757, 1948
TatI	WGTACW	4 cut(s)	376, 383, 828, 1760
TauI	GCSGC	2 cut(s)	99, 2130
TfiI	GAWTC	4 cut(s)	74, 776, 1236, 1691
TscAI	CASTG	4 cut(s)	508, 541, 1794, 2166
TspDTI	ATGAA	6 cut(s)	589, 1010, 1233, 1525, 1680, 2310
TspGWI	ACGGA	1 cut(s)	1494
TspRI	CASTG	4 cut(s)	508, 541, 1794, 2166
Van91I	CCANNNNNTGG	2 cut(s)	633, 1343
Vha464I	CTTAAG	2 cut(s)	841, 1637
VneI	GTGCAC	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	2194
VspI	ATTAAT	2 cut(s)	1368, 2270
XapI	RAATTY	6 cut(s)	1178, 1532, 1650, 1906, 2154, 2326
XceI	RCATGY	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	1756
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	1825
XspI	CTAG	6 cut(s)	1154, 1254, 1559, 1626, 1835, 2171
Zsp2I	ATGCAT	3 cut(s)	230, 1055, 2109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.