MD16G1135000.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
10359062 .. 10359235
174 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1135000.v1.1.491

Sequence Viewer

Length: 174 bp
ATGGTGGATCGAACCACGGTGGTGGTTGCTCATCGGTTAGCCACGATTAGGGGTGCAGATTTAATAGCAGTGGTGAAAGATGGAGTGATTGCAGAGAAAGGAGAGCATGAAACTTTGTTCAATATCCAGGATGGCATTTATGCTGCTTTGGTTGCACTGCATGCAAGTGCCTGA

Protein Analysis

58

Amino Acids

6.04

Weight (kDa)

5.78

Isoelectric Point (pI)

9.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 20
AlwI GGATC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 130
BccI CCATC 2 cut(s) 74, 125
BciT130I CCWGG 1 cut(s) 128
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 48
Bsp143I GATC 1 cut(s) 7
BspPI GGATC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 152, 161
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 2 cut(s) 75, 155
BtsIMutI CAGTG 2 cut(s) 75, 155
Cac8I GCNNGC 1 cut(s) 162
CviAII CATG 2 cut(s) 107, 161
CviJI RGCY 1 cut(s) 41
CviKI_1 RGCY 1 cut(s) 41
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 110, 164
FaiI YATR 3 cut(s) 108, 141, 162
FatI CATG 2 cut(s) 106, 160
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
Hin1II CATG 2 cut(s) 110, 164
HphI GGTGA 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 5 cut(s) 56, 92, 155, 160, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 161
Hsp92II CATG 2 cut(s) 110, 164
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 2 cut(s) 113, 140
Lsp1109I GCAGC 1 cut(s) 130
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 2 cut(s) 20, 165
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 152, 161
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 110, 164
NspI RCATGY 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 20
PaeI GCATGC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
RseI CAYNNNNRTG 2 cut(s) 20, 165
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 128
SgeI CNNG 5 cut(s) 28, 55, 119, 139, 140
SmiMI CAYNNNNRTG 2 cut(s) 20, 165
SphI GCATGC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 10
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 2 cut(s) 75, 162
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 2 cut(s) 75, 162
XceI RCATGY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.