pycom09g19790

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
20620677 .. 20621266
590 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19790.2

Sequence Viewer

Length: 507 bp
ATGGGGCTTGTGGGGCAAGAACCTGTCTTATTTAACGACACAATCCGTGCCAACATTGCATATGGAAAGGATGGTGATGCAACTGAGGCAGAAATCATAGCTGCGTCGGAGTTGGCCAATGCACACAAATTCATTAGTAGCTTGAATCAGGGGTATGACACGGTAGTAGGAGAACGAGGAATACAATTATCTGGGGGGCAGAAGCAACGCGTAGCCATTGCACGTGCAATAATCAAGAGCCCCAAGATATTACTGTTGGACGAAGCTACAAGTGCACTTGATGCTGAATCTGAGAGAGTGTTTCAAGATGCATTAGACAGGGTGATGGTAAACCGGACAACAGTAGTGGTTGCTCATCGACTATCGACAATCAAGAATGCTGATGTGATCGCGGTGGTTAAAAACGGAGTGATCGTAGAAAAAGGAAAGCATGATAAGCTGATCAATATTACTGATGGATTTTATGCATCCTTGGTTGCTCTGCACATGAGCGCTTCAACTGAATGA

Protein Analysis

169

Amino Acids

18.01

Weight (kDa)

5.81

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 210, 392
AciI CCGC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 128
AcvI CACGTG 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 493
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 3 cut(s) 145, 305, 498
AluBI AGCT 4 cut(s) 101, 141, 266, 439
AluI AGCT 4 cut(s) 101, 141, 266, 439
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
Aor51HI AGCGCT 1 cut(s) 493
AoxI GGCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 86, 334
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 116
BanII GRGCYC 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 88
BccI CCATC 3 cut(s) 65, 319, 449
BclI TGATCA 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 495
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmsI GCATC 4 cut(s) 67, 271, 298, 476
BsaAI YACGTR 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bse3DI GCAATG 2 cut(s) 54, 216
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 76, 467
BseMI GCAATG 2 cut(s) 54, 216
BseMII CTCAG 2 cut(s) 75, 282
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 467
Bsh1236I CGCG 2 cut(s) 210, 392
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 334
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 242, 277
Bsp143I GATC 3 cut(s) 387, 411, 441
BspACI CCGC 1 cut(s) 392
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 76, 283
BspFNI CGCG 2 cut(s) 210, 392
BsrDI GCAATG 2 cut(s) 54, 216
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 3 cut(s) 387, 411, 441
BssT1I CCWWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 163, 255, 343
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 84, 291
BstF5I GGATG 2 cut(s) 76, 467
BstFNI CGCG 2 cut(s) 210, 392
BstH2I RGCGCY 1 cut(s) 495
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 3 cut(s) 390, 414, 444
BstMBI GATC 3 cut(s) 387, 411, 441
BstMWI GCNNNNNNNGC 6 cut(s) 13, 56, 86, 272, 281, 436
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 2 cut(s) 210, 392
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 76, 467
CfoI GCGC 1 cut(s) 494
CseI GACGC 1 cut(s) 93
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 431, 487
CviJI RGCY 8 cut(s) 7, 101, 116, 141, 215, 240, 266, 439
CviKI_1 RGCY 8 cut(s) 7, 101, 116, 141, 215, 240, 266, 439
DdeI CTNAG 2 cut(s) 84, 291
DpnI GATC 3 cut(s) 389, 413, 443
DpnII GATC 3 cut(s) 387, 411, 441
EaeI YGGCCR 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 242
Eco47III AGCGCT 1 cut(s) 493
Eco72I CACGTG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 471
EcoT22I ATGCAT 2 cut(s) 313, 469
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 2 cut(s) 434, 490
FaiI YATR 7 cut(s) 61, 63, 98, 156, 432, 465, 488
FatI CATG 2 cut(s) 430, 486
FauNDI CATATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 83, 454
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 102
GlaI GCGC 1 cut(s) 493
GluI GCNGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 495
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 494
Hin1II CATG 2 cut(s) 434, 490
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HinfI GANTC 2 cut(s) 145, 287
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 86, 334
Hpy166II GTNNAC 2 cut(s) 275, 331
Hpy188I TCNGA 2 cut(s) 109, 292
Hpy188III TCNNGA 3 cut(s) 235, 305, 373
Hpy8I GTNNAC 2 cut(s) 275, 331
Hpy99I CGWCG 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 163, 255, 343
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 9 cut(s) 59, 80, 122, 221, 227, 275, 311, 467, 484
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 56, 86, 272, 281, 436
HpyF3I CTNAG 2 cut(s) 84, 291
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 434, 490
HspAI GCGC 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 387, 411, 441
LpnPI CCDG 5 cut(s) 36, 134, 177, 304, 347
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 4 cut(s) 67, 271, 298, 476
MaeII ACGT 1 cut(s) 223
MalI GATC 3 cut(s) 389, 413, 443
MboI GATC 3 cut(s) 387, 411, 441
MhlI GDGCHC 2 cut(s) 242, 277
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 2 cut(s) 128, 185
MluI ACGCGT 1 cut(s) 208
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 87, 237
MnlI CCTC 2 cut(s) 79, 170
Mox20I TGGCCA 1 cut(s) 116
Mph1103I ATGCAT 2 cut(s) 313, 469
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 33, 399
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 382
MvnI CGCG 2 cut(s) 210, 392
MwoI GCNNNNNNNGC 6 cut(s) 13, 56, 86, 272, 281, 436
NdeI CATATG 1 cut(s) 61
NdeII GATC 3 cut(s) 387, 411, 441
NlaIII CATG 2 cut(s) 434, 490
NsiI ATGCAT 2 cut(s) 313, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 145, 287
PkrI GCNGC 1 cut(s) 103
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PspCI CACGTG 1 cut(s) 224
PsrI GAACNNNNNNTAC 2 cut(s) 165, 197
SaqAI TTAA 2 cut(s) 33, 399
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 387, 411, 441
SduI GDGCHC 2 cut(s) 242, 277
SetI ASST 6 cut(s) 25, 103, 143, 226, 268, 441
SfaNI GCATC 4 cut(s) 67, 271, 298, 476
Sse9I AATT 2 cut(s) 128, 185
SsiI CCGC 1 cut(s) 392
SspI AATATT 1 cut(s) 448
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 3 cut(s) 163, 255, 343
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 358, 365
TasI AATT 2 cut(s) 128, 185
TfiI GAWTC 2 cut(s) 145, 287
Tru1I TTAA 2 cut(s) 33, 399
Tru9I TTAA 2 cut(s) 33, 399
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 121
TspGWI ACGGA 2 cut(s) 35, 420
VneI GTGCAC 1 cut(s) 273
XapI RAATTY 1 cut(s) 128
Zsp2I ATGCAT 2 cut(s) 313, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.