Rh5BG011400

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000116
Physical Location & Seq
Forward (+)
818466 .. 822067
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG011400.1

Sequence Viewer

Length: 237 bp
ATGGTTACCACTCGATCAGTGTTGTATTCTCTAAACTCTAAAGCGAAGGGATCATGCATATGGGATCCTGAGGAAAACAGATATCTCGACTTTTTTGTAGCTTACTCTGCTGTTAACCAGGATGTTGCTGTTAAGGTATTCTTCAAGCAAGAATATCCAGATGATGTGCTTCTTTCTTTTAGACAAGAAGTGAGCTACTTGCGCATTATTTGTACTATGTACTTGAAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

78

Amino Acids

9.22

Weight (kDa)

6.15

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 203
AclWI GGATC 3 cut(s) 58, 59, 72
AfaI GTAC 2 cut(s) 214, 221
AgsI TTSAA 2 cut(s) 145, 226
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 101, 195
AluI AGCT 2 cut(s) 101, 195
AlwI GGATC 3 cut(s) 58, 59, 72
AspLEI GCGC 1 cut(s) 204
AxyI CCTNAGG 1 cut(s) 69
BamHI GGATCC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 119
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 60
Bsp143I GATC 3 cut(s) 14, 50, 64
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 3 cut(s) 58, 59, 72
BssMI GATC 3 cut(s) 14, 50, 64
Bst2UI CCWGG 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 3 cut(s) 17, 53, 67
BstMBI GATC 3 cut(s) 14, 50, 64
BstMWI GCNNNNNNNGC 2 cut(s) 107, 201
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 24
CfoI GCGC 1 cut(s) 204
Csp6I GTAC 2 cut(s) 213, 220
CviAII CATG 1 cut(s) 54
CviJI RGCY 2 cut(s) 101, 195
CviKI_1 RGCY 2 cut(s) 101, 195
CviQI GTAC 2 cut(s) 213, 220
DdeI CTNAG 1 cut(s) 69
DpnI GATC 3 cut(s) 16, 52, 66
DpnII GATC 3 cut(s) 14, 50, 64
Eco32I GATATC 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 59
FaeI CATG 1 cut(s) 57
FaiI YATR 4 cut(s) 55, 59, 61, 218
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 1 cut(s) 53
FauNDI CATATG 1 cut(s) 59
FokI GGATG 1 cut(s) 134
FspI TGCGCA 1 cut(s) 203
GlaI GCGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaI GTTAAC 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 68, 86, 158
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 201
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 14, 50, 64
LpnPI CCDG 4 cut(s) 81, 104, 131, 171
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 16, 52, 66
MboI GATC 3 cut(s) 14, 50, 64
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 64
MnlI CCTC 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 2 cut(s) 114, 132
MslI CAYNNNNRTG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 107, 201
NdeI CATATG 1 cut(s) 59
NdeII GATC 3 cut(s) 14, 50, 64
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 66
NsbI TGCGCA 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 2 cut(s) 214, 221
RsaNI GTAC 2 cut(s) 213, 220
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 2 cut(s) 114, 132
Sau3AI GATC 3 cut(s) 14, 50, 64
ScrFI CCNGG 1 cut(s) 119
SetI ASST 3 cut(s) 103, 138, 197
SmiMI CAYNNNNRTG 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 117
TaqI TCGA 2 cut(s) 13, 87
TatI WGTACW 2 cut(s) 212, 219
Tru1I TTAA 2 cut(s) 114, 132
Tru9I TTAA 2 cut(s) 114, 132
TscAI CASTG 1 cut(s) 24
TspRI CASTG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.