Rmu_sc0036078.1_g000001

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036078.1
Physical Location & Seq
Reverse (-)
2 .. 608
607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036078.1_g000001.1.cds

Sequence Viewer

Length: 505 bp
atggttggtgagcatggaactcagctatctgggggccaaaagcagagagttgctatagccagagcaattttaaagaacccaaaaattcttcttttagatgaagcaacaagtgctcttgatgcagaatctgagagagttgtgcaagaggcattggacagaattatggttagtcggactactgtcattgtagcgcaccgcttgagcacagtaaggaatgctgataccattgcagtgatacatcgcggaacaattgttgagcaaggaccacatactgagctagttaaggatcctgatggtgcatatagccagcttataaggttgcaagaaattagcagtgtgtcagaacagaatgctcaaaatgatcatgaaaggccagaactttcttcaagttttcaaaaacttccttcctttcgctccataagtctgggatcatctggaagaggaaatagtcgccgccgcagccactcattctcaatctcacatggtgcacccactgtgaccggtg

Protein Analysis

168

Amino Acids

18.26

Weight (kDa)

9.29

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccII CGCG 1 cut(s) 243
AciI CCGC 4 cut(s) 196, 243, 454, 457
AclWI GGATC 3 cut(s) 281, 294, 436
AcsI RAATTY 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 485
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 2 cut(s) 387, 395
AluBI AGCT 3 cut(s) 25, 277, 310
AluI AGCT 3 cut(s) 25, 277, 310
Alw21I GWGCWC 3 cut(s) 115, 206, 490
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 3 cut(s) 281, 294, 436
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 2 cut(s) 34, 371
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 500
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 2 cut(s) 34, 263
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 490
BamHI GGATCC 1 cut(s) 286
Bbv12I GWGCWC 3 cut(s) 115, 206, 490
BbvI GCAGC 1 cut(s) 471
BccI CCATC 1 cut(s) 287
BclI TGATCA 1 cut(s) 361
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 3 cut(s) 454, 457, 460
BlsI GCNGC 3 cut(s) 455, 458, 461
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 34, 263
BmiI GGNNCC 2 cut(s) 35, 288
BmsI GCATC 1 cut(s) 109
BoxI GACNNNNGTC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 500
Bse118I RCCGGY 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 35, 120, 264
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 36, 373
BshTI ACCGGT 1 cut(s) 500
BsiHKAI GWGCWC 3 cut(s) 115, 206, 490
BsiSI CCGG 1 cut(s) 501
BsmI GAATGC 2 cut(s) 220, 355
BsnI GGCC 2 cut(s) 36, 373
Bsp1286I GDGCHC 3 cut(s) 115, 206, 490
Bsp143I GATC 3 cut(s) 286, 361, 428
BspACI CCGC 4 cut(s) 196, 243, 454, 457
BspANI GGCC 2 cut(s) 36, 373
BspCNI CTCAG 3 cut(s) 34, 121, 265
BspFNI CGCG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 35, 288
BspPI GGATC 3 cut(s) 281, 294, 436
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 500
BssAI RCCGGY 1 cut(s) 500
BssMI GATC 3 cut(s) 286, 361, 428
Bst4CI ACNGT 3 cut(s) 181, 208, 496
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 21, 129, 273
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 289, 364, 431
BstMBI GATC 3 cut(s) 286, 361, 428
BstMWI GCNNNNNNNGC 3 cut(s) 110, 119, 459
BstPAI GACNNNNGTC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 2 cut(s) 36, 373
BtgZI GCGATG 1 cut(s) 224
BtsI GCAGTG 2 cut(s) 237, 340
BtsIMutI CAGTG 3 cut(s) 237, 340, 492
Cac8I GCNNGC 1 cut(s) 308
CaiI CAGNNNCTG 1 cut(s) 128
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 2 cut(s) 34, 263
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 3 cut(s) 14, 365, 482
CviJI RGCY 8 cut(s) 25, 36, 59, 277, 306, 310, 373, 462
CviKI_1 RGCY 8 cut(s) 25, 36, 59, 277, 306, 310, 373, 462
DdeI CTNAG 3 cut(s) 21, 129, 273
DpnI GATC 3 cut(s) 288, 363, 430
DpnII GATC 3 cut(s) 286, 361, 428
DraI TTTAAA 1 cut(s) 72
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 263
FaeI CATG 3 cut(s) 17, 368, 485
FatI CATG 3 cut(s) 13, 364, 481
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 454, 457, 460
Fsp4HI GCNGC 3 cut(s) 454, 457, 460
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 192
GluI GCNGC 3 cut(s) 454, 457, 460
HaeIII GGCC 2 cut(s) 36, 373
HapII CCGG 1 cut(s) 501
HhaI GCGC 1 cut(s) 193
Hin1II CATG 3 cut(s) 17, 368, 485
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 501
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 3 cut(s) 130, 174, 343
Hpy188III TCNNGA 4 cut(s) 116, 290, 365, 435
Hpy8I GTNNAC 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 3 cut(s) 181, 208, 496
HpyCH4V TGCA 6 cut(s) 122, 142, 230, 299, 322, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 119, 459
HpyF3I CTNAG 3 cut(s) 21, 129, 273
Hsp92II CATG 3 cut(s) 17, 368, 485
HspAI GCGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 286, 361, 428
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 7 cut(s) 15, 73, 303, 320, 387, 410, 420
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 496
MalI GATC 3 cut(s) 288, 363, 430
MboI GATC 3 cut(s) 286, 361, 428
MboII GAAGA 3 cut(s) 80, 375, 450
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 3 cut(s) 115, 206, 490
MluCI AATT 5 cut(s) 66, 84, 159, 249, 327
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 2 cut(s) 139, 434
MseI TTAA 2 cut(s) 71, 282
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 501
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 2 cut(s) 220, 355
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 110, 119, 459
NdeII GATC 3 cut(s) 286, 361, 428
NlaIII CATG 3 cut(s) 17, 368, 485
NlaIV GGNNCC 2 cut(s) 35, 288
NmuCI GTSAC 1 cut(s) 496
PagI TCATGA 1 cut(s) 364
PctI GAATGC 2 cut(s) 220, 355
PfeI GAWTC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 3 cut(s) 455, 458, 461
PshAI GACNNNNGTC 1 cut(s) 179
PsiI TTATAA 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 35, 288
PspPI GGNCC 2 cut(s) 34, 263
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 71, 282
SatI GCNGC 3 cut(s) 454, 457, 460
Sau3AI GATC 3 cut(s) 286, 361, 428
Sau96I GGNCC 2 cut(s) 34, 263
SduI GDGCHC 3 cut(s) 115, 206, 490
SetI ASST 4 cut(s) 27, 279, 312, 320
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 5 cut(s) 66, 84, 159, 249, 327
SsiI CCGC 4 cut(s) 196, 243, 454, 457
SspMI CTAG 1 cut(s) 278
TaaI ACNGT 3 cut(s) 181, 208, 496
TasI AATT 5 cut(s) 66, 84, 159, 249, 327
TauI GCSGC 2 cut(s) 456, 459
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 71, 282
Tru9I TTAA 2 cut(s) 71, 282
TscAI CASTG 3 cut(s) 237, 340, 499
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 2 cut(s) 114, 381
TspRI CASTG 3 cut(s) 237, 340, 499
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 84
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.