MD16G1134700.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
10346482 .. 10353110
6629 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1134700.v1.1.491

Sequence Viewer

Length: 3885 bp
ATGGCTGAGGTAAATCCTGTGGAGGGCGATGTGGTCAAGGAGCAGGGCACGACAGCAACAAACGGGCACGCAGCAGTGGAGGATTCTGAAAACAGCCAGCAAGATACGATCAAGAACAAGCAGGATGGCACCAAAACAGTACCATATTACAAGCTTTTCTCCTTCGCTGATTCCTTGGATTGCATGCTAATGTCTGTTGGTGTAATCAGCGCCATTGGAAACGGGCTCTGTATGCCTCTAATGACTGTAATCATGGGAGATATCATTAATTCTTTTGGAGGAGCTGAGAATACCAAAGATGTTGTGGATGCAGTTTCGAAGGTAGCTCTAGAGTATGTTTACTTGGCTGTGGGAGCTGGTGCTGCTGCATTTCTGCAGATGTCTTGCTGGATGATCACCGGAGAGAGACAGGCTGCACGAATAAGAGGTTTATACTTGAAAACAATATTAAGGCAAGATGTTGGTTTTTTCGATAAAGAAGCGAACACTGGGGAAATTATTGGCAGGATGTCCGGTGATACTGTGTTCATTCAAGAGGCCATGGGCGAGAAGGTAGGAAGGTTCATCCAATTAATTGCCACATTCATTGGAGGCTTCATAATAGCATTTCTTAAGGGATGGCTTCTCACCCTTGTCATGCTATCGTCTCTTCCCCTTCTTGTCCTCTCAGGTGCTGTCATGGGCATCAATTTATCGAAGATGGCATCCCGTGGGCAAACTGCTTATTCACTGGCATCAACTGTGGTAGAGCAGACAGTTGGTTCAATCAGAACTGTTGTATCATTTACAGGAGAGAAACAGGCGATAGCTAATTACAACAATTCCTTAATAAAAGCTTACAAGTCGGGTGTGCACGAGGGTTTGGCTTCTGGTTTTGGGATTGGTGTTGTTCTGTTTATTATAATGTCTAGTTATGGTTTCGCTGTATGGTTTGGCGGAAAGATGATAATTGAAAAAGGATATACTGGAGGAGAAGTAATTAATGTAATTTTCGCTGCGTTGACTGCCTCCATGTCTCTTGGGCAGGCTTCTCCATGCCTGAGTGCATTTGCTGCTGGAAAAGCTGCAGCTTATAAAATGTTTGAGACGATTAACAGAAAGCCGGAGATAGATTCTTATGACACTAATGGGCAGCAGTTACAAGACATCCATGGAGACATAGAACTGAGGGATGTTTATTTCAGTTATCCTGCAAGACCAGATGAACAAATATTCCATGGATTTTCTCTCTCAATACCTAGTGGTGCAACTGCTGCTTTGGTTGGGCAGAGCGGAAGTGGTAAATCAACTGTGATCAGTTTGATTGAGAGGTTTTATGATCCCTTAGCTGGGGAAGTTCTTATTGATGGTATTAATCTGAAAGAGTTCCAGCTCAAATGGATCCGACAGAAAATAGGTCTTGTCAGCCAGGAACCCGTGTTGTTTACTTCTAGCATCAAAGATAACATTGCTTATGGGAAGGACGGTGCAACTAACGATGAAATAAGGGCTGCTATAGAGCTTGCTAATGCTGCTAAATTCATAGACAAACTGCCACAGGGACTAGACACAATGGTTGGGGAACATGGGACTCAGCTGTCTGGGGGCCAAAAGCAGAGAGTTGCTATAGCTAGAGCAATCCTGAAAGACCCGAGAATTCTACTTTTAGACGAAGCAACAAGTGCCCTTGATGCTGAATCTGAGAGAGTTGTGCAGGAGGCATTGGACAGAATTATGATTAATCGCACCACTGTCATTGTAGCCCATCGTTTGAGTACAGTAAGGAATGCTGACACCATTGCTGTTATACATAGAGGGGCAATCGTCGAAAAAGGTCGACATTCGGAGCTAATTAAGGACCCTGAAGGAGCATATAGCCAGCTTATAAGGTTGCAAGAAATGAGCAGTGTATCAGAGCAGACGACCGTGAATGATCATGATAGGCCAGAAATTAGTAGTGTGGATTCTCGGAGACATTCAAGTAAAAGATTTTCACTCTTACGATCCATAAGCCGGGGATCATCTGGAAGAGGAAACAGTAGTCGTCATTCCTTCTCAATCTCATTTGGTATGCCCAGTGCAATAGGTGTCCTTGACGCAGCACCTGCAGAATCTGATATTCTTGCTTCAAAATCATCAAGAGTACCTCCAGAAGTCTCGCTTCGCCGCCTAGCTTACCTGAACAAGCCAGAGATCCCAGTGTTGTTCCTAGGTACAATAGCTGCAGCAGCCAATGGGGTAGTCTTACCTATTTTTGGGTTATTGTTATCCAGTGTAATAAAGACCTTCTTTGAGCCACATCACGAACTCCGGAAGCATTCAAAGTTTTGGGCATTAATCTTTATTGTTCTTGGAGTGGGATCTTTAATAGCACTTCCAGCTAGACAATACTTTTTTTCTGTGGCTGGATTTAAATTAATAAAACGAGTCCGATCTATGTGCTTTGAGAAGGTAGTTTACATGGAAGTAAGCTGGTTTGACGATCCTGAGCACTCAAGTGGTGCAATTGGCGCAAGGCTTTCTGCAGATGCAGCTTCTCTGAGGGGGCTGCTTGGAGATGCTCTTGGTTTGCTTGTTCAGAATTTAGCAACTGCAATTGCTGGTTTGTTGATTGCTTTTGTGGCAAATTGGCGACTTGCTCTTATAATTCTTGTTTTGCTGCCTCTGTTAGGAGTAAATGGTTATTTTCACGTCAAGTTCATGAAAGGATTCAGTGCAGATGCAAAGAAAATGTACGAGGAGGCAAGTCAAGTAGCAAATGATGCTGTAGGGAGTATTAGAACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATTGAATTGTACCAGAAAAAATGTGAAGGACCTATTAAGACAGGGATTAGGCAAGGGTTAATCAGTGGAATAGGATTTGGTCTATCCTTCTTTTTTCTGTTTTCTGTGTACGCCACTAGTTTTTACGCGGGAGCCCGACTTGTTTCAGCTGGAAAGACAACATTCGCTGATGTTTTCCGGGTTTTCTTTGCTCTTACTATGACAGCTGTTGGAGTGTCTCAGTCGGGTTCCCTAACTACTGATGTAAGTAAAGCAAAGAGCTCTGCTGCTTCTATATTTGCAATTATCGATCGAAAATCAAAAATAGACTCCAGTGATGATTCTGGAACAACGATAGAAAATATGAAAGGCGAAATTGAATTCCACCATGTCAGCTTCAAGTATCCAACTCGACCTGACGTGCCAATCTTCCAGGACCTTTGCTTGACCATTCGTCGTGGCAAGACAGTTGCTCTGGTTGGAGAAAGCGGAAGTGGGAAATCGACAGTCGTCTCATTGTTGCAGAGATTTTATGACCCTGATTCAGGTCACATTACACTTGATGGAATCGAAATCCAAAAGCTACAGTTGAAGTGGTTGAGGCAGCAAATGGGGCTGGTGAGCCAGGAGCCTGTGTTGTTTAATGAAACTATCCGAGCCAACATTGCATATGGAAAGGAAGGGGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAATTGGCAAACGCTCACAAGTTCATCAGTAGTTTACAACAGGGTTACGATACAATCGTAGGAGAGCGGGGGGTTCAGCTGTCCGGCGGACAGAAACAAAGGGTGGCAATTGCAAGAGCTATAATGAAGGCACCAAAGATTTTACTACTAGATGAAGCCACGAGTGCGCTCGACGCTGAATCCGAACGAGTTGTCCAAGACGCACTGGATCGCGTCATGGTGGATCGAACCACGGTGGTGGTTGCTCATCGGTTATCAACGATTAAGAGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTGATCGCAGAGAAAGGAACGCATGAAACTTTGATCAATGTCGAGGATGGCATTTATGCTTCTTTGGTTGCTTTGCATGCAAGTGCCTCATCTTAG

Protein Analysis

1295

Amino Acids

139.62

Weight (kDa)

6.79

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 66 - 338 1.1e-58 ABC transporter transmembrane region
ABC_tran PF00005 406 - 554 8.5e-33 ABC transporter
ABC_membrane PF00664 728 - 1001 4.2e-60 ABC transporter transmembrane region
ABC_tran PF00005 1069 - 1218 3e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 902, 1074, 1865, 2624
AarI CACCTGC 1 cut(s) 2092
AasI GACNNNNNNGTC 1 cut(s) 1576
Acc36I ACCTGC 1 cut(s) 2092
AccB1I GGYRCC 2 cut(s) 128, 3619
AccBSI CCGCTC 2 cut(s) 1272, 3556
AccI GTMKAC 1 cut(s) 1816
AccII CGCG 2 cut(s) 2921, 3702
AccIII TCCGGA 1 cut(s) 2289
AciI CCGC 7 cut(s) 936, 1272, 2146, 2921, 3261, 3556, 3576
AcsI RAATTY 4 cut(s) 1517, 1635, 2560, 3152
AcuI CTGAAG 2 cut(s) 1863, 2802
AfaI GTAC 7 cut(s) 141, 1756, 2124, 2194, 2714, 2804, 2903
AfiI CCNNNNNNNGG 7 cut(s) 23, 1328, 1329, 1992, 2234, 2648, 3317
AflII CTTAAG 1 cut(s) 611
AhdI GACNNNNNGTC 1 cut(s) 3225
AhlI ACTAGT 1 cut(s) 2909
AjiI CACGTC 2 cut(s) 2671, 3193
AjnI CCWGG 3 cut(s) 1407, 3204, 3396
AleI CACNNNNGTG 2 cut(s) 2475, 3725
AloI GAACNNNNNNTCC 4 cut(s) 1197, 1229, 3666, 3698
Alw21I GWGCWC 3 cut(s) 855, 2472, 3056
Alw26I GTCTC 9 cut(s) 400, 651, 1020, 1079, 1149, 1945, 2140, 3015, 3289
Alw44I GTGCAC 1 cut(s) 851
AlwNI CAGNNNCTG 4 cut(s) 674, 2084, 2093, 3470
Ama87I CYCGRG 1 cut(s) 1630
Aor13HI TCCGGA 1 cut(s) 2289
AoxI GGCC 3 cut(s) 537, 1585, 1922
ApaLI GTGCAC 1 cut(s) 851
ApoI RAATTY 4 cut(s) 1517, 1635, 2560, 3152
ArsI GACNNNNNNTTYG 2 cut(s) 3666, 3698
AseI ATTAAT 7 cut(s) 267, 572, 981, 1353, 1719, 2315, 2396
Asp700I GAANNNNTTC 2 cut(s) 1364, 2687
AspA2I CCTAGG 1 cut(s) 2188
AspLEI GCGC 3 cut(s) 212, 2492, 3658
AspS9I GGNCC 4 cut(s) 1585, 1837, 2822, 3208
AsuC2I CCSGG 2 cut(s) 1994, 2972
AsuHPI GGTGA 6 cut(s) 388, 527, 619, 2803, 3403, 3790
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 1630
AvaII GGWCC 3 cut(s) 1837, 2822, 3208
AvrII CCTAGG 1 cut(s) 2188
BaeGI GKGCMC 4 cut(s) 50, 69, 855, 1666
BaeI ACNNNNGTAYC 4 cut(s) 762, 795, 3531, 3564
BamHI GGATCC 1 cut(s) 1380
BanI GGYRCC 2 cut(s) 128, 3619
BanII GRGCYC 3 cut(s) 228, 2929, 3056
BarI GAAGNNNNNNTAC 2 cut(s) 2420, 2452
BauI CACGAG 2 cut(s) 854, 3649
Bbv12I GWGCWC 3 cut(s) 855, 2472, 3056
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 7 cut(s) 119, 612, 694, 1340, 1752, 3329, 3830
BcgI CGANNNNNNTGC 2 cut(s) 2400, 2434
BciT130I CCWGG 3 cut(s) 1409, 3206, 3398
BciVI GTATCC 1 cut(s) 3186
BclI TGATCA 4 cut(s) 393, 1293, 1912, 3822
BcnI CCSGG 2 cut(s) 1994, 2972
BcoDI GTCTC 9 cut(s) 400, 651, 1020, 1079, 1149, 1945, 2140, 3015, 3289
BcuI ACTAGT 1 cut(s) 2909
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 611
BfuAI ACCTGC 1 cut(s) 2092
BfuI GTATCC 1 cut(s) 3186
BlnI CCTAGG 1 cut(s) 2188
Bme1390I CCNGG 5 cut(s) 1409, 1994, 2972, 3206, 3398
Bme18I GGWCC 3 cut(s) 1837, 2822, 3208
BmeRI GACNNNNNGTC 1 cut(s) 3225
BmeT110I CYCGRG 1 cut(s) 1630
BmgBI CACGTC 2 cut(s) 2671, 3193
BmgT120I GGNCC 4 cut(s) 1585, 1837, 2822, 3208
BmiI GGNNCC 9 cut(s) 130, 1382, 1413, 1586, 1839, 2926, 3022, 3402, 3621
BmrFI CCNGG 5 cut(s) 1409, 1994, 2972, 3206, 3398
BmrI ACTGGG 3 cut(s) 498, 2049, 2171
BmuI ACTGGG 3 cut(s) 498, 2049, 2171
BoxI GACNNNNGTC 1 cut(s) 3281
BpmI CTGGAG 3 cut(s) 987, 2112, 3088
Bpu10I CCTNAGC 3 cut(s) 6, 1324, 2466
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 2458
BpuMI CCSGG 2 cut(s) 1994, 2972
Bsa29I ATCGAT 1 cut(s) 3081
BsaJI CCNNGG 8 cut(s) 174, 540, 709, 1150, 1216, 1993, 2188, 3720
BsaWI WCCGGW 3 cut(s) 398, 512, 2289
BsaXI ACNNNNNCTCC 4 cut(s) 960, 990, 3392, 3422
Bsc4I CCNNNNNNNGG 7 cut(s) 23, 1328, 1329, 1992, 2234, 2648, 3317
Bse1I ACTGG 8 cut(s) 493, 735, 970, 2055, 2177, 2250, 3105, 3699
Bse3DI GCAATG 3 cut(s) 1446, 1776, 3435
BseAI TCCGGA 1 cut(s) 2289
BseBI CCWGG 3 cut(s) 1409, 3206, 3398
BseCI ATCGAT 1 cut(s) 3081
BseDI CCNNGG 8 cut(s) 174, 540, 709, 1150, 1216, 1993, 2188, 3720
BseLI CCNNNNNNNGG 7 cut(s) 23, 1328, 1329, 1992, 2234, 2648, 3317
BseMI GCAATG 3 cut(s) 1446, 1776, 3435
BseMII CTCAG 9 cut(s) 276, 681, 1031, 1157, 1586, 1671, 2457, 2510, 3026
BseNI ACTGG 8 cut(s) 493, 735, 970, 2055, 2177, 2250, 3105, 3699
BseRI GAGGAG 3 cut(s) 294, 984, 2732
BseSI GKGCMC 4 cut(s) 50, 69, 855, 1666
BseYI CCCAGC 1 cut(s) 1328
BsgI GTGCAG 4 cut(s) 399, 1712, 2715, 3780
Bsh1236I CGCG 2 cut(s) 2921, 3702
Bsh1285I CGRYCG 2 cut(s) 1905, 3085
BshFI GGCC 3 cut(s) 539, 1587, 1924
BshNI GGYRCC 2 cut(s) 128, 3619
BshVI ATCGAT 1 cut(s) 3081
BsiEI CGRYCG 2 cut(s) 1905, 3085
BsiHKAI GWGCWC 3 cut(s) 855, 2472, 3056
BsiHKCI CYCGRG 1 cut(s) 1630
BsiSI CCGG 7 cut(s) 399, 513, 1103, 1993, 2290, 2971, 3573
BslFI GGGAC 2 cut(s) 1554, 1582
BslI CCNNNNNNNGG 7 cut(s) 23, 1328, 1329, 1992, 2234, 2648, 3317
BsmAI GTCTC 9 cut(s) 400, 651, 1020, 1079, 1149, 1945, 2140, 3015, 3289
BsmBI CGTCTC 3 cut(s) 651, 1079, 3289
BsmFI GGGAC 2 cut(s) 1554, 1582
BsmI GAATGC 2 cut(s) 1771, 2296
BsnI GGCC 3 cut(s) 539, 1587, 1924
BsoBI CYCGRG 1 cut(s) 1630
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 8 cut(s) 50, 69, 228, 855, 1666, 2472, 2929, 3056
Bsp13I TCCGGA 1 cut(s) 2289
Bsp19I CCATGG 3 cut(s) 540, 1150, 1216
BspACI CCGC 7 cut(s) 936, 1272, 2146, 2921, 3261, 3556, 3576
BspANI GGCC 3 cut(s) 539, 1587, 1924
BspCNI CTCAG 9 cut(s) 277, 680, 1032, 1158, 1585, 1672, 2458, 2511, 3025
BspDI ATCGAT 1 cut(s) 3081
BspEI TCCGGA 1 cut(s) 2289
BspFNI CGCG 2 cut(s) 2921, 3702
BspHI TCATGA 2 cut(s) 1915, 2679
BspLI GGNNCC 9 cut(s) 130, 1382, 1413, 1586, 1839, 2926, 3022, 3402, 3621
BspMAI CTGCAG 6 cut(s) 378, 1069, 2089, 2206, 2506, 3487
BspMI ACCTGC 1 cut(s) 2092
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 2 cut(s) 128, 3619
BspTI CTTAAG 1 cut(s) 611
BsrBI CCGCTC 2 cut(s) 1272, 3556
BsrDI GCAATG 3 cut(s) 1446, 1776, 3435
BsrI ACTGG 8 cut(s) 493, 735, 970, 2055, 2177, 2250, 3105, 3699
BssECI CCNNGG 8 cut(s) 174, 540, 709, 1150, 1216, 1993, 2188, 3720
BssSI CACGAG 2 cut(s) 854, 3649
BssT1I CCWWGG 5 cut(s) 174, 540, 1150, 1216, 2188
Bst2BI CACGAG 2 cut(s) 854, 3649
Bst2UI CCWGG 3 cut(s) 1409, 3206, 3398
Bst6I CTCTTC 3 cut(s) 654, 2002, 2778
BstAFI CTTAAG 1 cut(s) 611
BstAPI GCANNNNNTGC 5 cut(s) 1052, 1253, 1661, 2084, 2741
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 7 cut(s) 69, 98, 185, 1026, 1503, 1859, 3867
BstDSI CCRYGG 5 cut(s) 540, 709, 1150, 1216, 3720
BstENI CCTNNNNNAGG 2 cut(s) 2646, 3315
BstFNI CGCG 2 cut(s) 2921, 3702
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 212, 2492, 3658
BstMAI GTCTC 9 cut(s) 400, 651, 1020, 1079, 1149, 1945, 2140, 3015, 3289
BstMCI CGRYCG 2 cut(s) 1905, 3085
BstNI CCWGG 3 cut(s) 1409, 3206, 3398
BstNSI RCATGY 2 cut(s) 187, 3869
BstPAI GACNNNNGTC 1 cut(s) 3281
BstSCI CCNGG 5 cut(s) 1407, 1992, 2970, 3204, 3396
BstSLI GKGCMC 4 cut(s) 50, 69, 855, 1666
BstUI CGCG 2 cut(s) 2921, 3702
BstX2I RGATCY 3 cut(s) 1380, 2172, 2339
BstXI CCANNNNNNTGG 1 cut(s) 3727
BstYI RGATCY 3 cut(s) 1380, 2172, 2339
Bsu15I ATCGAT 1 cut(s) 3081
BsuI GTATCC 1 cut(s) 3186
BsuRI GGCC 3 cut(s) 539, 1587, 1924
BsuTUI ATCGAT 1 cut(s) 3081
BtgI CCRYGG 5 cut(s) 540, 709, 1150, 1216, 3720
BtgZI GCGATG 1 cut(s) 42
BtrI CACGTC 2 cut(s) 2671, 3193
BtsI GCAGTG 3 cut(s) 81, 1891, 3780
BveI ACCTGC 1 cut(s) 2092
Cac8I GCNNGC 7 cut(s) 69, 98, 185, 1026, 1503, 1859, 3867
CaiI CAGNNNCTG 4 cut(s) 674, 2084, 2093, 3470
CciI TCATGA 2 cut(s) 1915, 2679
CfoI GCGC 3 cut(s) 212, 2492, 3658
Cfr13I GGNCC 4 cut(s) 1585, 1837, 2822, 3208
ClaI ATCGAT 1 cut(s) 3081
CseI GACGC 4 cut(s) 2084, 3671, 3691, 3698
Csp6I GTAC 7 cut(s) 140, 1755, 2123, 2193, 2713, 2803, 2902
CspCI CAANNNNNGTGG 4 cut(s) 568, 603, 1717, 1752
CviQI GTAC 7 cut(s) 140, 1755, 2123, 2193, 2713, 2803, 2902
DraI TTTAAA 1 cut(s) 2392
DrdI GACNNNNNNGTC 1 cut(s) 1576
DriI GACNNNNNGTC 1 cut(s) 3225
DseDI GACNNNNNNGTC 1 cut(s) 1576
Eam1104I CTCTTC 3 cut(s) 654, 2002, 2778
Eam1105I GACNNNNNGTC 1 cut(s) 3225
EarI CTCTTC 3 cut(s) 654, 2002, 2778
EciI GGCGGA 2 cut(s) 951, 3591
Ecl136II GAGCTC 1 cut(s) 3054
Eco130I CCWWGG 5 cut(s) 174, 540, 1150, 1216, 2188
Eco24I GRGCYC 3 cut(s) 228, 2929, 3056
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 1837, 2822, 3208
Eco53kI GAGCTC 1 cut(s) 3054
Eco57I CTGAAG 2 cut(s) 1863, 2802
Eco88I CYCGRG 1 cut(s) 1630
EcoICRI GAGCTC 1 cut(s) 3054
EcoNI CCTNNNNNAGG 2 cut(s) 2646, 3315
EcoO109I RGGNCCY 3 cut(s) 1837, 2822, 3208
EcoRI GAATTC 2 cut(s) 1635, 3152
EcoRII CCWGG 3 cut(s) 1407, 3204, 3396
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 5 cut(s) 174, 540, 1150, 1216, 2188
EcoT38I GRGCYC 3 cut(s) 228, 2929, 3056
ErhI CCWWGG 5 cut(s) 174, 540, 1150, 1216, 2188
Esp3I CGTCTC 3 cut(s) 651, 1079, 3289
FalI AAGNNNNNCTT 4 cut(s) 2124, 2156, 2252, 2284
FaqI GGGAC 2 cut(s) 1554, 1582
FauI CCCGC 2 cut(s) 2914, 3549
FauNDI CATATG 1 cut(s) 3442
FbaI TGATCA 4 cut(s) 393, 1293, 1912, 3822
FblI GTMKAC 1 cut(s) 1816
FriOI GRGCYC 3 cut(s) 228, 2929, 3056
GlaI GCGC 3 cut(s) 211, 2491, 3657
GsaI CCCAGC 1 cut(s) 1332
GsuI CTGGAG 3 cut(s) 987, 2112, 3088
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 3 cut(s) 539, 1587, 1924
HapII CCGG 7 cut(s) 399, 513, 1103, 1993, 2290, 2971, 3573
HgaI GACGC 4 cut(s) 2084, 3671, 3691, 3698
HhaI GCGC 3 cut(s) 212, 2492, 3658
Hin6I GCGC 3 cut(s) 210, 2490, 3656
HinP1I GCGC 3 cut(s) 210, 2490, 3656
HincII GTYRAC 2 cut(s) 1002, 1817
HindII GTYRAC 2 cut(s) 1002, 1817
HindIII AAGCTT 2 cut(s) 152, 834
HpaII CCGG 7 cut(s) 399, 513, 1103, 1993, 2290, 2971, 3573
HphI GGTGA 6 cut(s) 388, 527, 619, 2803, 3403, 3790
Hpy166II GTNNAC 8 cut(s) 340, 853, 1002, 1425, 1817, 2437, 2902, 3524
Hpy8I GTNNAC 8 cut(s) 340, 853, 1002, 1425, 1817, 2437, 2902, 3524
Hpy99I CGWCG 3 cut(s) 1808, 3231, 3665
HpyCH4IV ACGT 2 cut(s) 2670, 3192
HpySE526I ACGT 2 cut(s) 2670, 3192
HspAI GCGC 3 cut(s) 210, 2490, 3656
Kpn2I TCCGGA 1 cut(s) 2289
Ksp22I TGATCA 4 cut(s) 393, 1293, 1912, 3822
LmnI GCTCC 7 cut(s) 40, 281, 353, 1825, 1847, 2924, 3400
MaeII ACGT 2 cut(s) 2670, 3192
MaeIII GTNAC 3 cut(s) 1137, 3320, 3533
MbiI CCGCTC 2 cut(s) 1272, 3556
MboII GAAGA 5 cut(s) 641, 709, 2019, 2795, 3193
MfeI CAATTG 4 cut(s) 2484, 2574, 2763, 3597
MflI RGATCY 3 cut(s) 1380, 2172, 2339
MhlI GDGCHC 8 cut(s) 50, 69, 228, 855, 1666, 2472, 2929, 3056
MlyI GAGTC 3 cut(s) 1564, 2415, 3095
MmeI TCCRAC 4 cut(s) 1408, 2983, 3203, 3232
MroI TCCGGA 1 cut(s) 2289
MroXI GAANNNNTTC 2 cut(s) 1364, 2687
MslI CAYNNNNRTG 4 cut(s) 188, 2475, 3725, 3870
MspA1I CMGCKG 4 cut(s) 1576, 2942, 2999, 3568
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 7 cut(s) 399, 513, 1103, 1993, 2290, 2971, 3573
MspR9I CCNGG 5 cut(s) 1409, 1994, 2972, 3206, 3398
MunI CAATTG 4 cut(s) 2484, 2574, 2763, 3597
Mva1269I GAATGC 2 cut(s) 1771, 2296
MvaI CCWGG 3 cut(s) 1409, 3206, 3398
MvnI CGCG 2 cut(s) 2921, 3702
NciI CCSGG 2 cut(s) 1994, 2972
NcoI CCATGG 3 cut(s) 540, 1150, 1216
NdeI CATATG 1 cut(s) 3442
NlaIV GGNNCC 9 cut(s) 130, 1382, 1413, 1586, 1839, 2926, 3022, 3402, 3621
NmuCI GTSAC 1 cut(s) 3320
NspI RCATGY 2 cut(s) 187, 3869
NspV TTCGAA 1 cut(s) 317
OliI CACNNNNGTG 2 cut(s) 2475, 3725
PaeI GCATGC 2 cut(s) 187, 3869
PagI TCATGA 2 cut(s) 1915, 2679
PaqCI CACCTGC 1 cut(s) 2092
PcsI WCGNNNNNNNCGW 2 cut(s) 3543, 3669
PctI GAATGC 2 cut(s) 1771, 2296
PdmI GAANNNNTTC 2 cut(s) 1364, 2687
PfoI TCCNGGA 1 cut(s) 3204
Ple19I CGATCG 1 cut(s) 3085
PleI GAGTC 3 cut(s) 1564, 2414, 3095
PpsI GAGTC 3 cut(s) 1564, 2414, 3095
PpuMI RGGWCCY 3 cut(s) 1837, 2822, 3208
PshAI GACNNNNGTC 1 cut(s) 3281
PshBI ATTAAT 7 cut(s) 267, 572, 981, 1353, 1719, 2315, 2396
PsiI TTATAA 4 cut(s) 902, 1074, 1865, 2624
Psp124BI GAGCTC 1 cut(s) 3056
Psp5II RGGWCCY 3 cut(s) 1837, 2822, 3208
Psp6I CCWGG 3 cut(s) 1407, 3204, 3396
PspFI CCCAGC 1 cut(s) 1328
PspGI CCWGG 3 cut(s) 1407, 3204, 3396
PspN4I GGNNCC 9 cut(s) 130, 1382, 1413, 1586, 1839, 2926, 3022, 3402, 3621
PspPI GGNCC 4 cut(s) 1585, 1837, 2822, 3208
PspPPI RGGWCCY 3 cut(s) 1837, 2822, 3208
PstI CTGCAG 6 cut(s) 378, 1069, 2089, 2206, 2506, 3487
PstNI CAGNNNCTG 4 cut(s) 674, 2084, 2093, 3470
PsuI RGATCY 3 cut(s) 1380, 2172, 2339
PvuI CGATCG 1 cut(s) 3085
PvuII CAGCTG 4 cut(s) 1576, 2942, 2999, 3568
RsaI GTAC 7 cut(s) 141, 1756, 2124, 2194, 2714, 2804, 2903
RsaNI GTAC 7 cut(s) 140, 1755, 2123, 2193, 2713, 2803, 2902
RseI CAYNNNNRTG 4 cut(s) 188, 2475, 3725, 3870
SacI GAGCTC 1 cut(s) 3056
SalI GTCGAC 1 cut(s) 1815
Sau96I GGNCC 4 cut(s) 1585, 1837, 2822, 3208
SchI GAGTC 3 cut(s) 1564, 2415, 3095
ScrFI CCNGG 5 cut(s) 1409, 1994, 2972, 3206, 3398
SduI GDGCHC 8 cut(s) 50, 69, 228, 855, 1666, 2472, 2929, 3056
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 3 cut(s) 1837, 2822, 3208
SmiI ATTTAAAT 1 cut(s) 2392
SmiMI CAYNNNNRTG 4 cut(s) 188, 2475, 3725, 3870
SmlI CTYRAG 2 cut(s) 611, 2473
SmoI CTYRAG 2 cut(s) 611, 2473
SpeI ACTAGT 1 cut(s) 2909
SphI GCATGC 2 cut(s) 187, 3869
SsiI CCGC 7 cut(s) 936, 1272, 2146, 2921, 3261, 3556, 3576
SspI AATATT 2 cut(s) 447, 1212
SstI GAGCTC 1 cut(s) 3056
StyD4I CCNGG 5 cut(s) 1407, 1992, 2970, 3204, 3396
StyI CCWWGG 5 cut(s) 174, 540, 1150, 1216, 2188
SwaI ATTTAAAT 1 cut(s) 2392
TaiI ACGT 2 cut(s) 2673, 3195
TatI WGTACW 1 cut(s) 1754
TauI GCSGC 1 cut(s) 2148
TseFI GTSAC 1 cut(s) 3320
Tsp45I GTSAC 1 cut(s) 3320
Vha464I CTTAAG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 851
VpaK11BI GGWCC 3 cut(s) 1837, 2822, 3208
VspI ATTAAT 7 cut(s) 267, 572, 981, 1353, 1719, 2315, 2396
XagI CCTNNNNNAGG 2 cut(s) 2646, 3315
XapI RAATTY 4 cut(s) 1517, 1635, 2560, 3152
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 2 cut(s) 187, 3869
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmaJI CCTAGG 1 cut(s) 2188
XmiI GTMKAC 1 cut(s) 1816
XmnI GAANNNNTTC 2 cut(s) 1364, 2687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.